Skip to main content

Frequency Diffeomorphisms for Efficient Image Registration

  • Conference paper
  • First Online:
Information Processing in Medical Imaging (IPMI 2017)

Abstract

This paper presents an efficient algorithm for large deformation diffeomorphic metric mapping (LDDMM) with geodesic shooting for image registration. We introduce a novel finite dimensional Fourier representation of diffeomorphic deformations based on the key fact that the high frequency components of a diffeomorphism remain stationary throughout the integration process when computing the deformation associated with smooth velocity fields. We show that manipulating high dimensional diffeomorphisms can be carried out entirely in the bandlimited space by integrating the nonstationary low frequency components of the displacement field. This insight substantially reduces the computational cost of the registration problem. Experimental results show that our method is significantly faster than the state-of-the-art diffeomorphic image registration methods while producing equally accurate alignment. We demonstrate our algorithm in two different applications of image registration: neuroimaging and in-utero imaging.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Arnol’d, V.I.: Sur la géométrie différentielle des groupes de Lie de dimension infinie et ses applications à l’hydrodynamique des fluides parfaits. Ann. Inst. Fourier 16, 319–361 (1966)

    Article  MathSciNet  MATH  Google Scholar 

  2. Arsigny, V., Commowick, O., Pennec, X., Ayache, N.: A log-Euclidean framework for statistics on diffeomorphisms. In: Larsen, R., Nielsen, M., Sporring, J. (eds.) MICCAI 2006. LNCS, vol. 4190, pp. 924–931. Springer, Heidelberg (2006). doi:10.1007/11866565_113

    Chapter  Google Scholar 

  3. Ashburner, J.: A fast diffeomorphic image registration algorithm. Neuroimage 38(1), 95–113 (2007)

    Article  Google Scholar 

  4. Ashburner, J., Friston, K.J.: Unified segmentation. Neuroimage 26(3), 839–851 (2005)

    Article  Google Scholar 

  5. Avants, B.B., Epstein, C.L., Grossman, M., Gee, J.C.: Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med. Image Anal. 12(1), 26–41 (2008)

    Article  Google Scholar 

  6. Beg, M., Miller, M., Trouvé, A., Younes, L.: Computing large deformation metric mappings via geodesic flows of diffeomorphisms. Int. J. Comput. Vis. 61(2), 139–157 (2005)

    Article  Google Scholar 

  7. Christensen, G.E., Rabbitt, R.D., Miller, M.I.: Deformable templates using large deformation kinematics. IEEE Tran. Image Process. 5(10), 1435–1447 (1996)

    Article  Google Scholar 

  8. Francesco, B.: Invariant affine connections and controllability on lie groups. Technical report for Geometric Mechanics, California Institute of Technology (1995)

    Google Scholar 

  9. Johnson, K.A., Jones, K., Holman, B.L., Becker, J.A., Spiers, P.A., Satlin, A., Albert, M.S.: Preclinical prediction of Alzheimer’s disease using spect. Neurology 50(6), 1563–1571 (1998)

    Article  Google Scholar 

  10. Joshi, S., Davis, B., Jomier, M., Gerig, G.: Unbiased diffeomorphic atlas construction for computational anatomy. NeuroImage 23(Supplement 1), 151–160 (2004)

    Article  Google Scholar 

  11. Liao, R., Turk, E.A., Zhang, M., Luo, J., Grant, P.E., Adalsteinsson, E., Golland, P.: Temporal registration in in-utero volumetric MRI time series. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9902, pp. 54–62. Springer, Cham (2016). doi:10.1007/978-3-319-46726-9_7

    Chapter  Google Scholar 

  12. Miller, M.I., Trouvé, A., Younes, L.: Geodesic shooting for computational anatomy. J. Math. Imaging Vis. 24(2), 209–228 (2006)

    Article  MathSciNet  Google Scholar 

  13. Niethammer, M., Huang, Y., Vialard, F.-X.: Geodesic regression for image time-series. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011. LNCS, vol. 6892, pp. 655–662. Springer, Heidelberg (2011). doi:10.1007/978-3-642-23629-7_80

    Chapter  Google Scholar 

  14. Qiu, A., Younes, L., Miller, M.I.: Principal component based diffeomorphic surface mapping. Med. Imaging IEEE Trans. 31(2), 302–311 (2012)

    Article  Google Scholar 

  15. Schmah, T., Risser, L., Vialard, F.X.: Diffeomorphic image matching with left-invariant metrics. In: Chang, D.E., Holm, D.D., Patrick, G., Ratiu, T. (eds.) Geometry, Mechanics, and Dynamics, pp. 373–392. Springer, New york (2015)

    Google Scholar 

  16. Singh, N., Fletcher, P.T., Preston, J.S., Ha, L., King, R., Marron, J.S., Wiener, M., Joshi, S.: Multivariate statistical analysis of deformation momenta relating anatomical shape to neuropsychological measures. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010. LNCS, vol. 6363, pp. 529–537. Springer, Heidelberg (2010). doi:10.1007/978-3-642-15711-0_66

    Chapter  Google Scholar 

  17. Singh, N., Vialard, F.X., Niethammer, M.: Splines for diffeomorphisms. Med. Image Anal. 25(1), 56–71 (2015)

    Article  Google Scholar 

  18. Van Loan, C.: Computational Frameworks for the Fast Fourier Transform, vol. 10. SIAM, Philadelphia (1992)

    Book  MATH  Google Scholar 

  19. Vercauteren, T., Pennec, X., Perchant, A., Ayache, N.: Diffeomorphic demons: efficient non-parametric image registration. NeuroImage 45(1), S61–S72 (2009)

    Article  Google Scholar 

  20. Vialard, F.X., Risser, L., Rueckert, D., Cotter, C.J.: Diffeomorphic 3D image registration via geodesic shooting using an efficient adjoint calculation. Int. J. Comput. Vis. 97, 229–241 (2012)

    Article  MathSciNet  MATH  Google Scholar 

  21. Younes, L., Arrate, F., Miller, M.: Evolutions equations in computational anatomy. NeuroImage 45(1S1), 40–50 (2009)

    Article  Google Scholar 

  22. Zhang, M., Fletcher, P.T.: Bayesian principal geodesic analysis in diffeomorphic image registration. In: Golland, P., Hata, N., Barillot, C., Hornegger, J., Howe, R. (eds.) MICCAI 2014. LNCS, vol. 8675, pp. 121–128. Springer, Cham (2014). doi:10.1007/978-3-319-10443-0_16

    Google Scholar 

  23. Zhang, M., Fletcher, P.T.: Finite-dimensional lie algebras for fast diffeomorphic image registration. In: Ourselin, S., Alexander, D.C., Westin, C.-F., Cardoso, M.J. (eds.) IPMI 2015. LNCS, vol. 9123, pp. 249–260. Springer, Cham (2015). doi:10.1007/978-3-319-19992-4_19

    Chapter  Google Scholar 

Download references

Acknowledgments

This work was supported by NIH NIBIB NAC P41EB015902, NIH NINDS R01NS086905, NIH NICHD U01HD087211, and Wistron Corporation.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Miaomiao Zhang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing AG

About this paper

Cite this paper

Zhang, M. et al. (2017). Frequency Diffeomorphisms for Efficient Image Registration. In: Niethammer, M., et al. Information Processing in Medical Imaging. IPMI 2017. Lecture Notes in Computer Science(), vol 10265. Springer, Cham. https://doi.org/10.1007/978-3-319-59050-9_44

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-59050-9_44

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-59049-3

  • Online ISBN: 978-3-319-59050-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics