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Microbial Life in the Deep Sea: Psychropiezophiles

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Psychrophiles: From Biodiversity to Biotechnology

Abstract

Psychropiezophiles are microorganisms specialized for living in the deep-sea environment. Piezophiles display maximum growth at high pressure. Some can also grow at atmospheric pressure; those that cannot are referred to as obligatory piezophiles. A temperature change affects deep-sea psychropiezophiles more than a pressure change. Therefore, sample collection and cultivation temperature should be kept low. The preferred method for the long-term preservation and storage of psychropiezophiles is freezing in the vapor phase of liquid nitrogen. Initially, cultures of deep-sea psychropiezophilic bacteria were only species affiliated with one of five genera within the Gammaproteobacteria subgroup: Shewanella, Photobacterium, Colwellia, Moritella, and Psychromonas. However, more recently, species classified as Alphaproteobacteria and Firmicutes have also been found. The genome of several of these bacteria has been analyzed, which revealed characteristic features of these microorganisms. Psychropiezophiles contain unsaturated fatty acids in their cell membrane layers, but the presence of polyunsaturated fatty acids, like eicosapentaenoic acid and docosahexaenoic acid, is not obligatory for growth under high pressure. In the future, along with the development of culture methods and isolation techniques, a variety of other psychropiezophilic species will be discovered and the relationship between pressure and growth of psychropiezophiles will be clarified.

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References

  • Allen EE, Facciotti D, Bartlett DH (1999) Monounsaturated but not polyunsaturated fatty acids are required for growth of the deep-sea bacterium Photobacterium profundum SS9 at high pressure and low temperature. Appl Environ Microbiol 65:1710–1720

    CAS  PubMed  PubMed Central  Google Scholar 

  • Aono E, Baba T, Ara T, Nishi T, Nakamichi T, Inamoto E, Toyonaga H, Hasegawa M, Takai Y, Okumura Y, Baba M, Tomita M, Kato C, Oshima T, Nakasone K, Mori H (2010) Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments. Mol Biosyst 6:1216–1226

    Article  CAS  PubMed  Google Scholar 

  • Bartlett DH, Welch TJ (1995) OmpH gene expression is regulated by multiple environmental cues in addition to high pressure in the deep-sea bacterium Photobacterium species strain SS9. J Bacteriol 177:1008–1016

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Beijerinck MW (1889) Le Photobacterium luminosum, bactérie luminosum de la Mer Nord. Arch Néerl Sci 23:401–427 (in French)

    Google Scholar 

  • Bowman JP, Gosink JJ, McCammon SA, Lewis TE, Nichols DS, Nichols PD, Skerratt JH, Staley JT, McMeekin TA (1998) Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22:6w3). Int J Syst Bacteriol 48:1171–1180

    Article  CAS  Google Scholar 

  • Cao Y, Chastain RA, Eloe EA, Nogi Y, Kato C, Bartlett DH (2014) Novel psychropiezophilic Oceanospirillales species Profundimonas piezophila gen. nov., sp. nov., isolated from the deep-sea environment of the Puerto Rico Trench. Appl Environ Microbiol 80:54–60

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Collins MD, Farrow JAE, Phillips BA, Ferusu S, Jones D (1987) Classification of Lactobacillus divergens, Lactobacillus piscicola, and some catalase-negative, asporogenous, rod-shaped bacteria from poultry in a new genus, Carnobacterium. Int J Syst Bacteriol 37:310–316

    Article  Google Scholar 

  • Colwell RR, Morita RY (1964) Reisolation and emendation of description of Vibrio marinus (Russell) Ford. J Bacteriol 88:831–837

    CAS  PubMed  PubMed Central  Google Scholar 

  • DeLong EF, Yayanos AA (1985) Adaptation of the membrane lipids of a deep-sea bacterium to changes in hydrostatic pressure. Science 228:1101–1103

    Article  CAS  PubMed  Google Scholar 

  • DeLong EF, Yayanos AA (1986) Biochemical function and ecological significance of novel bacterial lipids in deep-sea prokaryotes. Appl Environ Microbiol 51:730–737

    CAS  PubMed  PubMed Central  Google Scholar 

  • DeLong EF, Franks DG, Yayanos AA (1997) Evolutionary relationship of cultivated psychrophilic and barophilic deep-sea bacteria. Appl Environ Microbiol 63:2105–2108

    CAS  PubMed  PubMed Central  Google Scholar 

  • Deming JW, Hada H, Colwell RR, Luehrsen KR, Fox GE (1984) The nucleotide sequence of 5S rRNA from two strains of deep-sea barophilic bacteria. J Gen Microbiol 130:1911–1920

    CAS  PubMed  Google Scholar 

  • Deming JW, Somers LK, Straube WL, Swartz DG, Macdonell MT (1988) Isolation of an obligately barophilic bacterium and description of a new genus, Colwellia gen. nov. System Appl Microbiol 10:152–160

    Article  Google Scholar 

  • De Poorter LMI, Suzaki Y, Sato T, Tamegai H, Kato C (2004) Effects of pressure on the structure and activity of isopropylmalate dehydrogenases from deep-sea Shewanella species. Mar Biotechnol 6:s190–s194

    Google Scholar 

  • Eloe EA, Malfatti F, Gutierrez J, Hardy K, Schmidt WE, Pogliano K, Pogliano J, Azam F, Bartlett DH (2011) Isolation and characterization of a psychropiezophilic Alphaproteobacterium. Appl Environ Microbiol 77:8145–8153

    Article  PubMed  PubMed Central  Google Scholar 

  • Fang JS, Barcelona MJ, Nogi Y, Kato C (2000) Biochemical implications and geochemical significance of novel phospholipids of the extremely barophilic bacteria from the Marianas Trench at 11,000 m. Deep-Sea Res Part I 47:1173–1182

    Article  CAS  Google Scholar 

  • Fang JS, Chan O, Kato C, Sato T, Peeples T, Niggemeyer K (2003) Phospholipid FA of piezophilic bacteria from the deep sea. Lipids 38:885–887

    Article  CAS  PubMed  Google Scholar 

  • Ikemoto E, Kyo M (1993) Development of microbiological compact mud sampler. Jpn Mar Sci Technol Res 30:1–16

    Google Scholar 

  • Kato C (1999) Barophiles (piezophiles). In: Horikoshi K, Tsujii K (eds) Extremophiles in deep-sea environments. Springer, Tokyo, pp 91–111

    Chapter  Google Scholar 

  • Kato C, Sato T, Horikoshi K (1995) Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Biodiv Conserv 4:1–9

    Article  Google Scholar 

  • Kato C, Li L, Nakamura Y, Nogi Y, Tamaoka J, Horikoshi K (1998) Extremely barophilic bacteria isolated from the Mariana Trench, Challenger Deep, at a depth of 11,000 meters. Appl Environ Microbiol 64:1510–1513

    CAS  PubMed  PubMed Central  Google Scholar 

  • Kato C, Nakasone K, Qureshi MH, Horikoshi K (2000) How do deep-sea microorganisms respond to changes in environmental pressure? In: Storey KB, Storey JM (eds) Cell and molecular response to stress, vol 1. Environmental stressors and gene responses. Elsevier Science BV, Amsterdam, pp 277–291

    Google Scholar 

  • Kawano H, Takahashi H, Abe F, Kato C, Horikoshi K (2009) Identification and characterization of two alternative sigma factors of RNA polymerase in the deep-sea piezophilic bacterium Shewanella violacea, strain DSS12. Biosci Biotechnol Biochem 73:200–202

    Article  CAS  PubMed  Google Scholar 

  • Lauro FM, Chastain RA, Blankenship LE, Yayanos AA, Bartlett DH (2007) The unique 16S rRNA genes of piezophiles reflect both phylogeny and adaptation. Appl Environ Microbiol 73:838–845

    Article  CAS  PubMed  Google Scholar 

  • MacDonell MT, Colwell RR (1985) Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 6:171–182

    Article  CAS  Google Scholar 

  • Margesin R, Nogi Y (2004) Psychropiezophilic microorganisms. Cell Mol Biol 50:429–436

    CAS  PubMed  Google Scholar 

  • Methé BA, Nelson KE, Deming JW, Momen B, Melamud E, Zhang X, Moult J, Madupu R, Nelson WC, Dodson RJ, Brinkac LM, Daugherty SC, Durkin AS, DeBoy RT, Kolonay JF, Sullivan SA, Zhou L, Davidsen TM, Wu M, Huston AL, Lewis M, Weaver B, Weidman JF, Khouri H, Utterback TR, Feldblyum TV, Fraser CM (2005) The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci USA 102:10913–10918

    Article  PubMed  PubMed Central  Google Scholar 

  • Miyazaki M, Nogi Y, Fujiwara Y, Horikoshi K (2008) Psychromonas japonica sp. nov., Psychromonas aquimarina sp. nov., Psychromonas macrocephali sp. nov. and Psychromonas ossibalaenae sp. nov., psychrotrophic bacteria isolated from sediment adjacent to sperm whale carcasses off Kagoshima, Japan. Int J Syst Evol Microbiol 58:1709–1714

    Article  CAS  PubMed  Google Scholar 

  • Mountfort DO, Rainey FA, Burghardt J, Kasper F, Stackebrant E (1998) Psychromonas antarcticus gen. nov., sp. nov., a new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo ice shelf, Antarctica. Arch Microbiol 169:231–238

    Article  CAS  PubMed  Google Scholar 

  • Nakasone K, Ikegami A, Kato C, Usami R, Horikoshi K (1998) Mechanisms of gene expression controlled by pressure in deep-sea microorganisms. Extremophiles 2:149–154

    Article  CAS  PubMed  Google Scholar 

  • Nakasone K, Ikegami A, Kawano H, Usami R, Kato C, Horikoshi K (2002) Transcriptional regulation under pressure conditions by the RNA polymerase s54 factor with a two component regulatory system in Shewanella violacea. Extremophiles 6:89–95

    Article  CAS  PubMed  Google Scholar 

  • Nogi Y, Kato C (1999) Taxonomic studies of extremely barophilic bacteria isolated from the Mariana Trench, and Moritella yayanosii sp. nov., a new barophilic bacterial species. Extremophiles 3:71–77

    Article  CAS  PubMed  Google Scholar 

  • Nogi Y, Kato C, Horikoshi K (1998a) Moritella japonica sp. nov., a novel barophilic bacterium isolated from a Japan Trench sediment. J Gen Appl Microbiol 44:289–295

    Article  CAS  PubMed  Google Scholar 

  • Nogi Y, Kato C, Horikoshi K (1998b) Taxonomic studies of deep-sea barophilic Shewanella species, and Shewanella violacea sp. nov., a new barophilic bacterial species. Arch Microbiol 170:331–338

    Article  CAS  PubMed  Google Scholar 

  • Nogi Y, Masui N, Kato C (1998c) Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2:1–7

    Article  CAS  PubMed  Google Scholar 

  • Nogi Y, Kato C, Horikoshi K (2002) Psychromonas kaikoae sp. nov., a novel piezophilic bacterium from the deepest cold-seep sediments in the Japan Trench. Int J Syst Evol Microbiol 52:1527–1532

    CAS  PubMed  Google Scholar 

  • Nogi Y, Hosoya S, Kato C, Horikoshi K (2004) Colwellia piezophila sp. nov., isolation of novel piezophilic bacteria from the deep-sea fissure sediments of the Japan Trench. Int J Syst Evol Microbiol 54:1627–1631

    Article  CAS  PubMed  Google Scholar 

  • Nogi Y, Hosoya S, Kato C, Horikoshi K (2007) Psychromonas hadalis sp. nov., a novel piezophilic bacterium isolated from the bottom of the Japan Trench. Int J Syst Evol Microbiol 57:1360–1364

    Article  CAS  PubMed  Google Scholar 

  • Ohmae E, Gekko K, Kato C (2015) Environmental adaptation of dihydrofolate reductase from deep-sea bacteria. In: Akasaka K, Matsuki H (eds) High pressure bioscience—basic concepts, applications and frontiers. Springer, Berlin, pp 423–442

    Google Scholar 

  • Owen R, Legros RM, Lapage SP (1978) Base composition, size and sequence similarities of genome deoxyribonucleic acids from clinical isolates of Pseudomonas putrefaciens. J Gen Microbiol 104:127–138

    Article  CAS  PubMed  Google Scholar 

  • Seo HJ, Bae SS, Lee J-H, Kim S-J (2005) Photobacterium frigidiphilum sp. nov., a psychrophilic, lipolytic bacterium isolated from deep-sea sediments of Edison Seamount. Int J Syst Evol Microbiol 55:1661–1666

    Article  CAS  PubMed  Google Scholar 

  • Stelling SC, Techtmann SM, Utturkar SM, Alshibli NK, Brown SD, Hazen TC (2014) Draft genome sequence of Thalassotalea sp. strain ND16A isolated from eastern Mediterranean Sea water collected from a depth of 1,055 meters. Genome Announcement 2:e01231-14

    Article  Google Scholar 

  • Tamegai H, Kawano H, Ishii A, Chikuma S, Nakasone K, Kato C (2005) Pressure-regulated biosynthesis of cytochrome bd in piezo- and psychrophilic deepsea bacterium Shewanella violacea DSS12. Extremophiles 9:247–253

    Article  CAS  PubMed  Google Scholar 

  • Urakawa H, Kita-Tsukamoto K, Steven SE, Ohwada K, Colwell RR (1998) A proposal to transfer Vibrio marinus (Russell 1891) to a new genus Moritella gen. nov. as Moritella marina comb. nov. FEMS Microbiol Lett 165:373–378

    Article  CAS  PubMed  Google Scholar 

  • Vezzi A, Campanaro S, D’Angelo M, Simonato F, Vitulo N, Laauro FM, Cestaro A, Malacrida G, Simionati B, Cannata N, Romualdi C, Bartlett DH, Valle G (2005) Life at depth: Photobacterium profundum genome sequence and expression analysis. Science 307:1459–1461

    Article  CAS  PubMed  Google Scholar 

  • Xiao X, Wang P, Zeng X, Bartlett DH, Wang F (2007) Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment. Int J Syst Evol Microbiol 57:60–65

    Article  CAS  PubMed  Google Scholar 

  • Xu Y, Nogi Y, Kato C, Liang Z, Rüger H-J, Kegel DD, Glansdorff N (2003a) Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments. Int J Syst Evol Microbiol 53:527–532

    Article  CAS  PubMed  Google Scholar 

  • Xu Y, Nogi Y, Kato C, Liang Z, Rüger H-J, Kegel DD, Glansdorff N (2003b) Moritella profunda sp. nov. and Moritella abyssi sp. nov., two psychropiezophilic organisms isolated from deep Atlantic sediments. Int J Syst Evol Microbiol 53:533–538

    Article  CAS  PubMed  Google Scholar 

  • Yayanos AA (1986) Evolutional and ecological implications of the propertiesof deep-sea barophilic bacteria. Proc Natl Acad Sci U S A 83:9542–9546

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yayanos AA (1995) Microbiology to 10,500 meters in the deep sea. Annu Rev Microbiol 49:777–805

    Article  CAS  PubMed  Google Scholar 

  • Yayanos AA, DeLong EF (1987) Deep-sea bacterial fitness to environmental temperatures and pressure. In: Jannasch HW, Marquis RE, Zimmerman AM (eds) Current perspectives in high pressure biology. Academic, Toronto, pp 17–32

    Google Scholar 

  • Yayanos AA, Dietz AS, Van Boxtel R (1979) Isolation of a deep-sea barophilic bacterium and some of its growth characteristics. Science 205:808–810

    Article  CAS  PubMed  Google Scholar 

  • Yayanos AA, Dietz AS, Van Boxtel R (1981) Obligately barophilic bacterium from the Mariana Trench. Proc Natl Acad Sci U S A 78:5212–5215

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • ZoBell CE, Johnson FH (1949) The influence of hydrostatic pressure on the growth and viability of terrestrial and marine bacteria. J Bacteriol 57:179–189

    CAS  PubMed  PubMed Central  Google Scholar 

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Correspondence to Yuichi Nogi .

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Nogi, Y. (2017). Microbial Life in the Deep Sea: Psychropiezophiles. In: Margesin, R. (eds) Psychrophiles: From Biodiversity to Biotechnology. Springer, Cham. https://doi.org/10.1007/978-3-319-57057-0_7

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