Abstract
Coronary artery analysis plays an important role in the diagnosis and treatment of coronary heart disease. Coronary artery segmentation, as an important part of quantitative researc h on coronary heart disease, has become the main topic in coronary artery analysis. In this paper, a deep convolutional neural network (CNN) based method called Coronary Artery U-net (CAU-net) is proposed for the automatic segmentation of coronary arteries in digital subtraction angiography (DSA) images. CAU-net is a variant of U-net. Based on the observation that coronary arteries are composed of many vessels with the same appearance but different thicknesses, a novel multi-scale feature fusion method is proposed in CAU-net. Besides, a new dataset is proposed to solve the problem of no available public dataset on coronary arteries segmentation, which is also one of our contributions. Our dataset contains 538 image samples, which is relatively large compared with the public datasets of other vessel segmentation tasks. In our dataset, a new labeling method is applied to ensure the purity of the labeling samples. From the experimental results, we prove that CAU-net can make significant improvements compared with the vanilla U-net, and achieve the state-of-the-art performance compared with other traditional segmentation methods and deep learning methods.
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References
Ronneberger, O., Fischer, P., Brox, T.: U-net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28
Frangi, A.F., Niessen, W.J., Vincken, K.L., Viergever, M.A.: Multiscale vessel enhancement filtering. In: Wells, W.M., Colchester, A., Delp, S. (eds.) MICCAI 1998. LNCS, vol. 1496, pp. 130–137. Springer, Heidelberg (1998). https://doi.org/10.1007/BFb0056195
Manniesing, R., Viergever, M.A., Niessen, W.J.: Vessel enhancing diffusion: a scale space representation of vessel structures. Med. Image Anal. 10(6), 815–825 (2006)
Brieva, J., Gonzalez, E., Gonzalez, F., Bousse, A., Bellanger, J.J.: A level set method for vessel segmentation in coronary angiography. In: IEEE Engineering in Medicine and Biology 27th Annual Conference, Shanghai, pp. 6348–6351 (2005)
Kerkeni, A., Benabdallah, A., Manzanera, A., Bedoui, M.H.: A coronary artery segmentation method based on multiscale analysis and region growing. Comput. Med. Imag. Graph. 48, 49–61 (2016)
Dehkordi, M.T., Mohamad, A., Hoseini, D., Sadri, S., Soltanianzadeh, H.: Local feature fitting active contour for segmenting vessels in angiograms. IET Comput. Vis. 8(3), 161–170 (2014)
Fan, J., et al.: Multichannel fully convolutional network for coronary artery segmentation in x-ray angiograms. IEEE Access 6, 44635–44643 (2018)
Yang, S., et al.: Automatic coronary artery segmentation in X-ray angiograms by multiple convolutional neural networks. In: Proceedings of the 3rd International Conference on Multimedia and Image Processing, pp. 31–35 (2018)
Staal, J., Abramoff, M.D., Niemeijer, M., Viergever, M.A., van Ginneken, B.: Ridge-based vessel segmentation in color images of the retina. IEEE Trans. Med. Imaging 23(4), 501–509 (2004)
Hoover, A., Kouznetsova, V., Goldbaum, M.: Locating blood vessels in retinal images by piecewise threshold probing of a matched filter response. IEEE Trans. Med. Imaging 19(3), 203–210 (2000)
You, X., Peng, Q., Yuan, Y., Cheung, Y., Lei, J.: Segmentation of retinal blood vessels using the radial projection and semi-supervised approach. Pattern Recogn. 44(10–11), 2314–2324 (2011)
Orlando, I., Prokofyeva, E., Blaschko, M.B.: A discriminatively trained fully connected conditional random field model for blood vessel segmentation in fundus images. IEEE Trans. Biomed. Eng. 64(1), 16–27 (2016)
Li, Q., et al.: A cross-modality learning approach for vessel segmentation in retinal images. IEEE Trans. Med. Imaging 35(1), 109–118 (2016)
Wu, Y., Xia, Y., Song, Y., Zhang, Y., Cai, W.: Multiscale network followed network model for retinal vessel segmentation. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11071, pp. 119–126. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00934-2_14
Lin, T., Dollár, P., Girshick, R., He, K., Hariharan, B., Belongie, S.: Feature pyramid networks for object detection. In: 2017 IEEE Conference on Computer Vision and Pattern Recognition, pp. 936–944. IEEE (2017)
Hu, J., Shen, L., Sun, G.: Squeeze-and-excitation networks. In: 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 7132–7141. IEEE (2018)
He, K., Zhang, X., Ren, S., Sun, J.: Identity mappings in deep residual networks. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016. LNCS, vol. 9908, pp. 630–645. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46493-0_38
Oktay, O., et al.: Attention U-net: learning where to look for the pancreas. arXiv preprint arXiv:1804.03999 (2018)
Acknowledgments
This work was supported in part by the National Key Research and Development Program of China under Grant 2019YFB1311700, the National Natural Science Foundation of China under Grants 61533016, U1913601, and 61421004, the Youth Innovation Promotion Association of CAS under Grant 2020140 and the Strategic Priority Research Program of CAS under Grant XDBS01040100.
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Li, RQ., Bian, GB., Zhou, XH., Xie, X., Ni, ZL., Hou, Z. (2020). CAU-net: A Novel Convolutional Neural Network for Coronary Artery Segmentation in Digital Substraction Angiography. In: Yang, H., Pasupa, K., Leung, A.CS., Kwok, J.T., Chan, J.H., King, I. (eds) Neural Information Processing. ICONIP 2020. Lecture Notes in Computer Science(), vol 12532. Springer, Cham. https://doi.org/10.1007/978-3-030-63830-6_16
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