Skip to main content

Overview of LifeCLEF 2019: Identification of Amazonian Plants, South & North American Birds, and Niche Prediction

  • Conference paper
  • First Online:
Experimental IR Meets Multilinguality, Multimodality, and Interaction (CLEF 2019)

Abstract

Building accurate knowledge of the identity, the geographic distribution and the evolution of living species is essential for a sustainable development of humanity, as well as for biodiversity conservation. Unfortunately, such basic information is often only partially available for professional stakeholders, teachers, scientists and citizens, and often incomplete for ecosystems that possess the highest diversity. In this context, an ultimate ambition is to set up innovative information systems relying on the automated identification and understanding of living organisms as a means to engage massive crowds of observers and boost the production of biodiversity and agro-biodiversity data. The LifeCLEF 2019 initiative proposes three data-oriented challenges related to this vision, in the continuity of the previous editions but with several consistent novelties intended to push the boundaries of the state-of-the-art in several research directions. This paper describes the methodology of the conducted evaluations as well as the synthesis of the main results and lessons learned.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 59.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 79.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    http://www.lifeclef.org/.

  2. 2.

    http://www.imageclef.org/.

  3. 3.

    www.gbif.org.

References

  1. Atodiresei, C.S., Iftene, A.: Location-based species recommendation - GeoLifeCLEF 2019 challenge. In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  2. Botella, C.: A compilation of environmental geographic rasters for SDM covering France (version 1) (data set). Zenodo (2019). https://doi.org/10.5281/zenodo.2635501

  3. Botella, C., Bonnet, P., Joly, A., Lombardo, J.C., Affouard, A.: Pl@ntnet queries 2017–2018 in France. Zenodo (2019). https://doi.org/10.5281/zenodo.2634137

  4. Botella, C., Servajean, M., Bonnet, P., Joly, A.: Overview of GeoLifeCLEF 2019: plant species prediction using environment and animal occurrences. In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  5. Cai, J., Ee, D., Pham, B., Roe, P., Zhang, J.: Sensor network for the monitoring of ecosystem: bird species recognition. In: 2007 3rd International Conference on Intelligent Sensors, Sensor Networks and Information. ISSNIP 2007 (2007)

    Google Scholar 

  6. Koh, C.-Y., Chang, J.-Y., C.L.T.D.Y.H., Hsieh, H.H.: Bird sound classification using convolutional neural networks. In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  7. Chulif, S., Jing Heng, K., Wei Chan, T., Al Monnaf, M.A., Chang, Y.L.: Plant identification on Amazonian and Guiana shield flora: neuon submission to LifeCLEF 2019 plant. In: CLEF (Working Notes) (2019)

    Google Scholar 

  8. Costandache, M.A.: Bird species identification using neural networks. In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  9. Dat Nguyen Thanh, G.Q., Goeuriot, L.: Non-local DenseNet for plant CLEF 2019 contest. In: CLEF (Working Notes) (2019)

    Google Scholar 

  10. Gaston, K.J., O’Neill, M.A.: Automated species identification: why not? Philos. Trans. R. Soc. Lond. B Biol. Sci. 359(1444), 655–667 (2004)

    Article  Google Scholar 

  11. Ghazi, M.M., Yanikoglu, B., Aptoula, E.: Plant identification using deep neural networks via optimization of transfer learning parameters. Neurocomputing 235, 228–235 (2017)

    Article  Google Scholar 

  12. Glotin, H., Clark, C., LeCun, Y., Dugan, P., Halkias, X., Sueur, J.: Proceedings of 1st workshop on Machine Learning for Bioacoustics - ICML4B. ICML, Atlanta USA (2013). http://sabiod.org/ICML4B2013_book.pdf

  13. Goëau, H., Bonnet, P., Joly, A.: Plant identification based on noisy web data: the amazing performance of deep learning (LifeCLEF 2017). In: CLEF 2017-Conference and Labs of the Evaluation Forum, pp. 1–13 (2017)

    Google Scholar 

  14. Goëau, H., Bonnet, P., Joly, A.: Plant identification based on noisy web data: the amazing performance of deep learning (LifeCLEF 2017). In: Working Notes of CLEF 2017 (Cross Language Evaluation Forum) (2017)

    Google Scholar 

  15. Goëau, H., Bonnet, P., Joly, A.: Overview of ExpertLifeCLEF 2018: how far automated identification systems are from the best experts? In: CLEF Working Notes 2018 (2018)

    Google Scholar 

  16. Goëau, H., Bonnet, P., Joly, A.: Overview of LifeCLEF plant identification task 2019: diving into data deficient tropical countries. In: Working Notes of CLEF 2019 (Cross Language Evaluation Forum) (2019)

    Google Scholar 

  17. Goëau, H., et al.: The imageclef 2013 plant identification task. In: CLEF 2013, Valencia (2013)

    Google Scholar 

  18. Goëau, H., et al.: The ImageCLEF 2011 plant images classification task. In: CLEF 2011 (2011)

    Google Scholar 

  19. Goëau, H., et al.: ImageCLEF 2012 plant images identification task. In: CLEF 2012, Rome (2012)

    Google Scholar 

  20. Goëau, H., et al.: The ImageCLEF plant identification task 2013. In: Proceedings of the 2nd ACM International Workshop on Multimedia Analysis for Ecological Data, pp. 23–28. ACM (2013)

    Google Scholar 

  21. Bai, J., Wang, B., Chen, C., Fu, Z.-H., Chen, J.: Inception-V3 based method of LifeCLEF 2019 bird recognition. In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  22. Joly, A., et al.: Interactive plant identification based on social image data. Ecol. Inform. 23, 22–34 (2014)

    Article  Google Scholar 

  23. Kahl, S., Stöter, F.R., Glotin, H., Planqué, R., Vellinga, W.P., Joly, A.: Overview of BirdCLEF 2019: large-scale bird recognition in Soundscapes. In: CLEF (Working Notes) (2019)

    Google Scholar 

  24. Krause, J., et al.: The unreasonable effectiveness of noisy data for fine-grained recognition. In: Leibe, B., Matas, J., Sebe, N., Welling, M. (eds.) ECCV 2016. LNCS, vol. 9907, pp. 301–320. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46487-9_19

    Chapter  Google Scholar 

  25. Krishna, N., Kumar, P., Kaushik, R.R., Mirunalini, P., Chandrabose, A., Jaisakthi, S.M.: Species recommendation using machine learning - GeoLifeCLEF2019. In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  26. Lasseck, M.: Bird species identification in Soundscapes. In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  27. Lee, D.J., Schoenberger, R.B., Shiozawa, D., Xu, X., Zhan, P.: Contour matching for a fish recognition and migration-monitoring system. In: Optics East, pp. 37–48. International Society for Optics and Photonics (2004)

    Google Scholar 

  28. Lee, S.H., Chan, C.S., Remagnino, P.: Multi-organ plant classification based on convolutional and recurrent neural networks. IEEE Trans. Image Process. 27(9), 4287–4301 (2018)

    Article  MathSciNet  Google Scholar 

  29. Monestiez, P., Botella, C.: Species recommendation using intensity models and sampling bias correction (GeoLifeCLEF 2019: Lof\_of\_lof team). In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  30. Negri, M., Servajean, M., Joly, A.: Plant prediction from CNN model trained with other kingdom species (GeoLifeCLEF 2019: LIRMM team). In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  31. NIPS International Conference: Proceedings of Neural Information Processing Scaled for Bioacoustics, from Neurons to Big Data (2013). http://sabiod.org/nips4b

  32. Picek, L.,Šulc, M., Matas, J.: Recognition of the Amazonian flora by inception networks with test-time class prior estimation. In: CLEF (Working Notes) (2019)

    Google Scholar 

  33. Si-Moussi, S., Hedde, M., Daufresne, T.: Species recommendation using environment and biotic associations. In: CLEF Working Notes 2019 (2019)

    Google Scholar 

  34. Towsey, M., Planitz, B., Nantes, A., Wimmer, J., Roe, P.: A toolbox for animal call recognition. Bioacoustics 21(2), 107–125 (2012)

    Article  Google Scholar 

  35. Trifa, V.M., Kirschel, A.N., Taylor, C.E., Vallejo, E.E.: Automated species recognition of antbirds in a Mexican rainforest using hidden Markov models. J. Acoust. Soc. Am. 123, 2424 (2008)

    Article  Google Scholar 

Download references

Acknowledgements

We would like to thank very warmly Julien Engel, Rémi Girault, Jean-François Molino and the two other expert botanists who agreed to participate in the task on plant identification. We also we would like to thank the University of Montpellier and the Floris’Tic project (ANRU) who contributed to the funding of the 2019-th edition of LifeCLEF.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Alexis Joly .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Joly, A. et al. (2019). Overview of LifeCLEF 2019: Identification of Amazonian Plants, South & North American Birds, and Niche Prediction. In: Crestani, F., et al. Experimental IR Meets Multilinguality, Multimodality, and Interaction. CLEF 2019. Lecture Notes in Computer Science(), vol 11696. Springer, Cham. https://doi.org/10.1007/978-3-030-28577-7_29

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-28577-7_29

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-28576-0

  • Online ISBN: 978-3-030-28577-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics