Abstract
ADP-ribosylation is a well-known post-translational protein modification, which regulates a variety of cellular processes. The proteins able to catalyze mono- or poly ADP-ribosylation of proteins belong to the family of ADP-ribosyltransferases. A variety of nuclear proteins has been described to be ADP-ribosylated, including ARTD1 itself and histone proteins. Despite intensive research during the last 40 years, the acceptor amino acids in ARTD1 or histone proteins could be identified and confirmed only recently by MS/MS and by site-directed mutagenesis. The establishment of a standardized protocol including the specific enrichment of ADP-ribosylated proteins and peptides and subsequent mass spectrometric analysis allows the identification of ADP-ribose acceptor sites of modified proteins and to address the functional contribution of ADP-ribosylation in vitro as well as in vivo.
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References
Hottiger MO, Hassa PO, Lüscher B et al (2010) Towards a unified nomenclature for mammalian ADP-ribosyltransferases. Trends Biochem Sci 35:208–219
Hassa PO, Haenni SS, Elser M, Hottiger MO (2006) Nuclear ADP-ribosylation reactions in mammalian cells: where are we today and where are we going? Microbiol Mol Biol Rev 70:789–829
Quenet D, El Ramy R, Schreiber V, Dantzer F (2009) The role of poly(ADP-ribosyl)ation in epigenetic events. Int J Biochem Cell Biol 41:60–65
Ogata N, Ueda K, Hayaishi O (1980) ADP-ribosylation of histone h2b. Identification of glutamic acid residue 2 as the modification site. J Biol Chem 255:7610–7615
Ogata N, Ueda K, Kagamiyama H, Hayaishi O (1980) ADP-ribosylation of histone h1. Identification of glutamic acid residues 2, 14, and the COOH-terminal lysine residue as modification sites. J Biol Chem 255:7616–7620
Altmeyer M, Messner S, Hassa PO et al (2009) Molecular mechanism of poly(ADP-ribosyl)ation by parp1 and identification of lysine residues as ADP-ribose acceptor sites. Nucleic Acids Res 37:3723–3738
Messner S, Altmeyer M, Zhao H et al (2010) PARP1 ADP-ribosylates lysine residues of the core histone tails. Nucleic Acids Res 38:6350–6362
Alvarez-Gonzales R, Juares-Salinas H, Jacobson EL, Jacobson MK (1983) Evaluation of immobilized boronates for studies of adenine and pyridine nucleotide metabolism. Anal Biochem 135:69–77
Hengel SM, Shaffer SA, Nunn BL, Goodlett DR (2009) Tandem mass spectrometry investigation of ADP-ribosylated kemptide. J Am Soc Mass Spectrom 20:477–483
Syka JEP, Coon JJ, Schroeder MJ et al (2004) Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. PNAS 26:9528–9533
Zee BM, Garcia BA (2010) Electron transfer dissociation facilitates sequencing of adenosine diphosphate-ribosylated peptides. Anal Chem 82:28–31
Acknowledgments
The authors would like to thank Dr. Dorothea Rutishauser (former member of the Functional Genomics Center Zurich, University of Zurich, Zurich, Switzerland) for advice and technical assistance. We also thank Felix R. Althaus (Institute of Pharmacology and Toxicology, University of Zurich-Vetsuisse) for providing hPARG expressing baculo virus. Work on ADP-ribosyltransferases in the laboratory of M.O.H is supported by the Swiss National Science Foundation (SNF 31-122421).
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Rosenthal, F., Messner, S., Roschitzki, B., Gehrig, P., Nanni, P., Hottiger, M.O. (2011). Identification of Distinct Amino Acids as ADP-Ribose Acceptor Sites by Mass Spectrometry. In: Tulin, A. (eds) Poly(ADP-ribose) Polymerase. Methods in Molecular Biology, vol 780. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-270-0_4
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DOI: https://doi.org/10.1007/978-1-61779-270-0_4
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Publisher Name: Humana Press, Totowa, NJ
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