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IPD

The Immuno Polymorphism Database

  • Protocol
Immunoinformatics

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 409))

Summary

The Immuno Polymorphism Database (IPD) (http://www.ebi.ac.uk/ipd/) is a set of specialist databases related to the study of polymorphic genes in the immune system. IPD currently consists of four databases: IPD-KIR, contains the allelic sequences of killer cell immunoglobulin-like receptors (KIRs); IPD-MHC, a database of sequences of the major histocompatibility complex (MHC) of different species; IPD-HPA, alloantigens expressed only on platelets; and IPD-ESTAB, which provides access to the European Searchable Tumour Cell Line Database, a cell bank of immunologically characterized melanoma cell lines. The IPD project works with specialist groups or nomenclature committees who provide and curate individual sections before they are submitted to IPD for online publication. The IPD project stores all the data in a set of related databases. Those sections with similar data, such as IPD-KIR and IPD-MHC, share the same database structure.

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References

  1. Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., and Wheeler, D. L. (2005) Nucleic Acids Res 33, D34–8.

    Article  CAS  PubMed  Google Scholar 

  2. Kanz, C., Aldebert, P., Althorpe, N., Baker, W., Baldwin, A., Bates, K., Browne, P., van den Broek, A., Castro, M., Cochrane, G., Duggan, K., Eberhardt, R., Faruque, N., Gamble, J., Diez, F. G., Harte, N., Kulikova, T., Lin, Q., Lombard, V., Lopez, R., Mancuso, R., McHale, M., Nardone, F., Silventoinen, V., Sobhany, S., Stoehr, P., Tuli, M. A., Tzouvara, K., Vaughan, R., Wu, D., Zhu, W., and Apweiler, R. (2005) Nucleic Acids Res 33, D29–33.

    Article  CAS  PubMed  Google Scholar 

  3. Miyazaki, S., Sugawara, H., Ikeo, K., Gojobori, T., and Tateno, Y. (2004) Nucleic Acids Res 32, D31–4.

    Article  CAS  PubMed  Google Scholar 

  4. Garcia, C. A., Robinson, J., Guethlein, L. A., Parham, P., Madrigal, J. A., and Marsh, S. G. E. (2003) Immunogenetics 55, 227–39.

    Article  CAS  PubMed  Google Scholar 

  5. Marsh, S. G. E., Parham, P., Dupont, B., Geraghty, D. E., Trowsdale, J., Middleton, D., Vilches, C., Carrington, M., Witt, C., Guethlein, L. A., Shilling, H., Garcia, C. A., Hsu, K. C., and Wain, H. (2003) Immunogenetics 55, 220–6.

    Article  PubMed  Google Scholar 

  6. Kennedy, L. J., Altet, L., Angles, J. M., Barnes, A., Carter, S. D., Francino, O., Gerlach, J. A., Happ, G. M., Ollier, W. E., Polvi, A., Thomson, W., and Wagner, J. L. (1999) Tissue Antigens 54, 312–21.

    Article  CAS  PubMed  Google Scholar 

  7. Klein, J., Bontrop, R. E., Dawkins, R. L., Erlich, H. A., Gyllensten, U. B., Heise, E. R., Jones, P. P., Parham, P., Wakeland, E. K., and Watkins, D. I. (1990) Immunogenetics 31, 217–9.

    CAS  PubMed  Google Scholar 

  8. Stear, M. J., Pokorny, T. S., Fryda-Bradley, S., Lie, O., and Bull, R. W. (1990) J Immunogenet 17, 21–8.

    Article  CAS  PubMed  Google Scholar 

  9. Parham, P. (1999) Immunol Rev 167, 5–15.

    Article  CAS  PubMed  Google Scholar 

  10. Ellis, S. A., Bontrop, R. E., Antczak, D. F., Ballingall, K., Davies, C. J., Kaufman, J., Kennedy, L. J., Robinson, J., Smith, D. M., Stear, M. J., Stet, R. J., Waller, M. J., Walter, L., and Marsh, S. G. (2006) Immunogenetics 57, 953–8.

    Article  PubMed  Google Scholar 

  11. Robinson, J., Malik, A., Parham, P., Bodmer, J. G., and Marsh, S. G. E. (2000) Tissue Antigens 55, 280–7.

    Article  CAS  PubMed  Google Scholar 

  12. Robinson, J., Waller, M. J., Parham, P., de Groot, N., Bontrop, R., Kennedy, L. J., Stoehr, P., and Marsh, S. G. E. (2003) Nucleic Acids Res 31, 311–4.

    Article  CAS  PubMed  Google Scholar 

  13. von dem Borne, A. E., and Decary, F. (1990) Vox Sang 58, 176.

    Article  Google Scholar 

  14. von dem Borne, A. E., and Decary, F. (1990) Hum Immunol 29, 1–2.

    Article  Google Scholar 

  15. Metcalfe, P., Watkins, N. A., Ouwehand, W. H., Kaplan, C., Newman, P., Kekomaki, R., De Haas, M., Aster, R., Shibata, Y., Smith, J., Kiefel, V., and Santoso, S. (2003) Vox Sang 85, 240–5.

    Article  CAS  PubMed  Google Scholar 

  16. Pawelec, G., and Marsh, S. G. (2006) Cancer Immunol Immunother 1–5.

    Google Scholar 

  17. Harte, N., Silventoinen, V., Quevillon, E., Robinson, S., Kallio, K., Fustero, X., Patel, P., Jokinen, P., and Lopez, R. (2004) Nucleic Acids Res 32, W3–9.

    Article  CAS  PubMed  Google Scholar 

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© 2007 Humana Press Inc.

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Robinson, J., Marsh, S.G.E. (2007). IPD. In: Flower, D.R. (eds) Immunoinformatics. Methods in Molecular Biology™, vol 409. Humana Press. https://doi.org/10.1007/978-1-60327-118-9_4

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  • DOI: https://doi.org/10.1007/978-1-60327-118-9_4

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-699-3

  • Online ISBN: 978-1-60327-118-9

  • eBook Packages: Springer Protocols

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