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Aptamer Arrays

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Biological Microarrays

Part of the book series: Methods in Molecular Biology ((MIMB,volume 671))

Abstract

In less than 40 years, aptamers have consolidated their role in biosensor development. Chemically related to nucleic acid probes, production of aptamers against targets of various sizes and compositions places them as ideal capture elements, alternative to more consolidated molecules such as antibodies. Thanks to their chemical simplicity and production, as well as their unique characteristics, aptamers have been successfully integrated in several innovative approaches. The incorporation of aptamers into the existing microarray technologies has lead to the reporting of various detection strategies, including direct fluorescence detection of fluorescent reporters, fluorescence anisotropy, FRET, SPR imaging, and electrochemical detection.

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References

  1. Baldrich E, Campàs Homs M, O’Sullivan CK. Aptamers: Powerful molecular tools for therapeutics and diagnostics. In: Rapley R, Harbron S, eds. Molecular Analysis and Genome Discovery. London: John Wiley & Sons, Ltd; 2004:193–217.

    Google Scholar 

  2. Baldrich E, O’Sullivan CK. Aptamers as analytical tools. In: Grimes CA, Dickey EC, Pishko MV, eds. Encyclopedia of Sensors. Pennsylvania, USA: American Scientific Publishers; 2006:275–295.

    Google Scholar 

  3. Hesselberth J, Robertson MP, Jhaveri S, Ellington AD. In vitro selection of nucleic acids for diagnostic applications. Rev Mol Biotechnol 2000;74:15–25.

    Article  CAS  Google Scholar 

  4. James WC. Aptamers. In: Meyers RA, ed. Encyclopedia of Analytical Chemistry. Chichester: John Wiley & Sons, Ltd; 2001:4848–4871.

    Google Scholar 

  5. Jayasena SD. Aptamers, an emerging class of molecules that rival antibodies in diagnostics. Clin Chem 1999;45:1628–1650.

    CAS  Google Scholar 

  6. Osborne SE, Matsumura I, Ellington AD. Aptamers as therapeutic and diagnostic reagents: Problems and prospects. Curr Opin Chem Biol 1997;1:5–9.

    Article  CAS  Google Scholar 

  7. Kleinjung F, Klussmann S, Erdmann VA, Scheller FW, Fürste JP. High-affinity RNA as a recognition element in a biosensor. Anal Chem 1998;70:328–331.

    Article  CAS  Google Scholar 

  8. Lee M, Walt DR. A fiber-optic microarray biosensor using aptamers as receptors. Anal Biochem 2000;282:142–146.

    Article  CAS  Google Scholar 

  9. Kirby R, Cho EJ, Gehrke B, et al. Aptamer-based sensor arrays for the detection and quantitation of proteins. Anal Chem 2004;76:4066–4075.

    Article  CAS  Google Scholar 

  10. Bock C, Coleman M, Collins B, et al. Photoaptamer arrays applied to multiplexed proteomic analysis. Proteomics 2004;4:609–618.

    Article  CAS  Google Scholar 

  11. Golden MC, Collins BD, Willis MC, Koch TH. Diagnostic potential of photoSELEX-evolved ssDNA aptamers. J Biotechnol 2000;81:167–178.

    Article  CAS  Google Scholar 

  12. Petach H, Gold L. Dimensionality is the issue: Use of photoaptamers in protein microarrays. Curr Opin Biotechnol 2002;13:309–314.

    Article  CAS  Google Scholar 

  13. Cho EJ, Collett JR, Szafranska AE, Ellington AD. Optimization of aptamer microarray technology for multiple protein targets. Anal Chim Acta 2006;564:82–90.

    Article  CAS  Google Scholar 

  14. Collett JR, Cho EJ, Lee JF, et al. Functional RNA microarrays for high-throughput screening of antiprotein aptamers. Anal Biochem 2005;338:113–123.

    Article  CAS  Google Scholar 

  15. Collett JR, Eun JC, Ellington AD. Production and processing of aptamer microarrays. Methods 2005;37:4–15.

    Article  CAS  Google Scholar 

  16. McCauley TG, Hamaguchi N, Stanton M. Aptamer-based biosensor arrays for detection and quantification of biological macromolecules. Anal Biochem 2003;319:244–250.

    Article  CAS  Google Scholar 

  17. Lin C, Katilius E, Liu Y, Zhang J, Yan H. Self-assembled signaling aptamer DNA arrays for protein detection. Angew Chem Int Ed Engl 2006;45:5296–5301.

    Article  CAS  Google Scholar 

  18. Bérn Abérem M, Najari A, Ho A-A, et al. Protein detecting arrays based on cationic polythiophene-DNA-aptamer complexes. Adv Mater 2006;18:2703–2707.

    Article  Google Scholar 

  19. Li Y, Hye JL, Corn RM. Detection of protein biomarkers using RNA aptamer microarrays and enzymatically amplified surface plasmon resonance imaging. Anal Chem 2007;79:1082–1088.

    Article  CAS  Google Scholar 

  20. Li Y, Lee HJ, Corn RM. Fabrication and characterization of RNA aptamer microarrays for the study of protein-aptamer interactions with SPR imaging. Nucleic Acids Res 2006;34(22):6416–6424.

    Article  CAS  Google Scholar 

  21. Xu D, Xu D, Yu X, Liu Z, He W, Ma Z. Label-free electrochemical detection for aptamer-based array electrode. Anal Chem 2005;77:5107–5113.

    Article  CAS  Google Scholar 

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Acknowledgments

The author is supported by an I3P fellowship from the Consejo Superior de Investigaciones Científicas (CSIC, Spain).

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Correspondence to Eva Baldrich .

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Baldrich, E. (2011). Aptamer Arrays. In: Khademhosseini, A., Suh, KY., Zourob, M. (eds) Biological Microarrays. Methods in Molecular Biology, vol 671. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-59745-551-0_2

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  • DOI: https://doi.org/10.1007/978-1-59745-551-0_2

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-934115-95-4

  • Online ISBN: 978-1-59745-551-0

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