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Application of DNA Microarray Technology to Gerontological Studies

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Biological Aging

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 371))

Abstract

The emergence of microarray technology as a novel tool in molecular biology has led to significant progress in many biomedical disciplines, including gerontology. Both cDNA and oligonucleotide-based DNA microarrays are now widely used to identify the basic physiological mechanisms of aging and to uncover the molecular mechanisms underlying the biological effects of anti-aging drugs. Two different protocols covering both cDNA and oligonucleotide microarray platforms, with radioactive and nonradioactive (fluorescent) labeling, are detailed in the manuscript. These in-depth protocols provide a background for the technical aspects of everyday work with DNA microarrays.

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References

  1. Choudhuri, S. (2004) Microarrays in biology and medicine. J. Biochem. Mol. Toxicol. 18, 171–179.

    Article  CAS  PubMed  Google Scholar 

  2. Enders, G. (2004) Gene profiling-chances and challenges. Acta Neurochir. Suppl. 89, 9–13.

    CAS  PubMed  Google Scholar 

  3. Schena, M., Shalon, D., Davis, R. W., and Brown, P. O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467–470.

    Article  CAS  PubMed  Google Scholar 

  4. Truckenmiller, M. E., Vawter, M. P., Cheadle, C., Coggiano, M., Donovan, D. M., Freed, W. J., et al. (2001) Gene expression profile in early stage of retinoic acid-induced differentiation of human SH-SY5Y neuroblastoma cells. Restor. Neurol, Neurosci. 18, 67–80.

    CAS  Google Scholar 

  5. Ida, H., Boylan, S. A., Weigel, A. L., and Hjelmeland, L. M. (2003) Age-related changes in the transcriptional profile of mouse RPE/choroid. Physiol. Genomics 15, 258–262.

    CAS  PubMed  Google Scholar 

  6. Blalock, E. M., Chen, K. C., Sharrow, K., Herman, J. P., Porter, N. M., Foster, T. C., et al. (2003) Gene microarrays in hippocampal aging: statistical profiling identifies novel processes correlated with cognitive impairment. J. Neurosci. 23, 3807–3819.

    CAS  PubMed  Google Scholar 

  7. Hamatani, T., Falco, G., Carter, M. G., Akutsu, H., Stagg, C. A., Sharov, A. A., et al. (2004) Age-associated alteration of gene expression patterns in mouse oocytes. Hum. Mol. Genet. 13, 2263–2278.

    Article  CAS  PubMed  Google Scholar 

  8. Park, S. K., and Prolla, T. A. (2005) Lessons learned from gene expression profile studies of aging and caloric restriction. Ageing Res. Rev. 4, 55–65.

    Article  CAS  PubMed  Google Scholar 

  9. Anisimov, S. V., Boheler, K. R., Khavinson, V. Kh., and Anisimov, V. N. (2002) Studies of the effects of Vilon and Epithalon on gene expression in mouse heart using DNA-microarray technology. Bull. Exp. Biol. Med. 133, 293–299.

    Article  CAS  PubMed  Google Scholar 

  10. Anisimov, S. V., Khavinson, V. Kh., and Anisimov, V. N. (2004) Elucidation of the effect of brain cortex tetrapeptide Cortagen on gene expression in mouse heart by microarray. Neuro Endocrinol. Lett. 25, 87–93.

    CAS  PubMed  Google Scholar 

  11. Jervis, K. M., and Robaire, B. (2004) The effects of long-term vitamin E treatment on gene expression and oxidative stress damage in the aging Brown Norway rat epididymis. Biol. Reprod. 71, 1088–1095.

    Article  CAS  PubMed  Google Scholar 

  12. Yauk, C. L., Berndt, M. L., Williams, A., and Douglas, G. R. (2004) Comprehensive comparison of six microarray technologies. Nucleic Acids Res. 32, e124.

    Article  PubMed  Google Scholar 

  13. Devi, A., Mukundan M. A., Srivastava, U., and Sarjar, N. K. (1963) The effect of age on the variations of deoxyribonucleic acid, ribonucleic acid and total nucleotides in liver, brain and muscle of rat. Exp. Med. Res. 32, 242–250.

    CAS  Google Scholar 

  14. Lee, M. L., Kuo, F. C., Whitmore, G. A., and Sklar, J. (2000) Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Natl. Acad. Sci. U S A 97, 9834–9839.

    Article  CAS  Google Scholar 

  15. Churchill, G. A. (2002) Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32Suppl, 490–495.

    Article  CAS  PubMed  Google Scholar 

  16. Quackenbush, J. (2001) Computational analysis of microarray data. Nat. Rev. Genet. 2, 418–427.

    Article  CAS  PubMed  Google Scholar 

  17. Cheadle, C., Vawter, M. P., Freed, W. J., and Becker, K. G. (2003) Analysis of microarray data using Z score transformation. J. Mol. Diagn. 5, 73–81.

    Article  CAS  PubMed  Google Scholar 

  18. Hackl, H., Cabo, F. S., Sturn, A., Wolkenhauer, O., and Trajanoski, Z. (2004) Analysis of DNA microarray data. Curr. Top. Med. Chem. 4, 1355–1368.

    Article  Google Scholar 

  19. Irizarry, R. A., Warren, D., Spencer, F., Kim, I. F., Biswal, S., Frank, B. C., et al. (2005) Multiple-laboratory comparison of microarray platforms. Nat. Methods 2, 345–350.)

    Article  CAS  PubMed  Google Scholar 

  20. Kargul, G. J., Dudekula, D. B., Qian, Y., et al. (2001) Verification and initial annotation of the NIA mouse 15K cDNA clone set. Nat. Genet. 28, 17–18.

    Article  PubMed  Google Scholar 

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© 2007 Humana Press Inc., Totowa, NJ

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Anisimov, S.V. (2007). Application of DNA Microarray Technology to Gerontological Studies. In: Tollefsbol, T.O. (eds) Biological Aging. Methods in Molecular Biology™, vol 371. Humana Press. https://doi.org/10.1007/978-1-59745-361-5_19

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  • DOI: https://doi.org/10.1007/978-1-59745-361-5_19

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-658-0

  • Online ISBN: 978-1-59745-361-5

  • eBook Packages: Springer Protocols

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