Abstract
The emergence of microarray technology as a novel tool in molecular biology has led to significant progress in many biomedical disciplines, including gerontology. Both cDNA and oligonucleotide-based DNA microarrays are now widely used to identify the basic physiological mechanisms of aging and to uncover the molecular mechanisms underlying the biological effects of anti-aging drugs. Two different protocols covering both cDNA and oligonucleotide microarray platforms, with radioactive and nonradioactive (fluorescent) labeling, are detailed in the manuscript. These in-depth protocols provide a background for the technical aspects of everyday work with DNA microarrays.
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References
Choudhuri, S. (2004) Microarrays in biology and medicine. J. Biochem. Mol. Toxicol. 18, 171–179.
Enders, G. (2004) Gene profiling-chances and challenges. Acta Neurochir. Suppl. 89, 9–13.
Schena, M., Shalon, D., Davis, R. W., and Brown, P. O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467–470.
Truckenmiller, M. E., Vawter, M. P., Cheadle, C., Coggiano, M., Donovan, D. M., Freed, W. J., et al. (2001) Gene expression profile in early stage of retinoic acid-induced differentiation of human SH-SY5Y neuroblastoma cells. Restor. Neurol, Neurosci. 18, 67–80.
Ida, H., Boylan, S. A., Weigel, A. L., and Hjelmeland, L. M. (2003) Age-related changes in the transcriptional profile of mouse RPE/choroid. Physiol. Genomics 15, 258–262.
Blalock, E. M., Chen, K. C., Sharrow, K., Herman, J. P., Porter, N. M., Foster, T. C., et al. (2003) Gene microarrays in hippocampal aging: statistical profiling identifies novel processes correlated with cognitive impairment. J. Neurosci. 23, 3807–3819.
Hamatani, T., Falco, G., Carter, M. G., Akutsu, H., Stagg, C. A., Sharov, A. A., et al. (2004) Age-associated alteration of gene expression patterns in mouse oocytes. Hum. Mol. Genet. 13, 2263–2278.
Park, S. K., and Prolla, T. A. (2005) Lessons learned from gene expression profile studies of aging and caloric restriction. Ageing Res. Rev. 4, 55–65.
Anisimov, S. V., Boheler, K. R., Khavinson, V. Kh., and Anisimov, V. N. (2002) Studies of the effects of Vilon and Epithalon on gene expression in mouse heart using DNA-microarray technology. Bull. Exp. Biol. Med. 133, 293–299.
Anisimov, S. V., Khavinson, V. Kh., and Anisimov, V. N. (2004) Elucidation of the effect of brain cortex tetrapeptide Cortagen on gene expression in mouse heart by microarray. Neuro Endocrinol. Lett. 25, 87–93.
Jervis, K. M., and Robaire, B. (2004) The effects of long-term vitamin E treatment on gene expression and oxidative stress damage in the aging Brown Norway rat epididymis. Biol. Reprod. 71, 1088–1095.
Yauk, C. L., Berndt, M. L., Williams, A., and Douglas, G. R. (2004) Comprehensive comparison of six microarray technologies. Nucleic Acids Res. 32, e124.
Devi, A., Mukundan M. A., Srivastava, U., and Sarjar, N. K. (1963) The effect of age on the variations of deoxyribonucleic acid, ribonucleic acid and total nucleotides in liver, brain and muscle of rat. Exp. Med. Res. 32, 242–250.
Lee, M. L., Kuo, F. C., Whitmore, G. A., and Sklar, J. (2000) Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Natl. Acad. Sci. U S A 97, 9834–9839.
Churchill, G. A. (2002) Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32Suppl, 490–495.
Quackenbush, J. (2001) Computational analysis of microarray data. Nat. Rev. Genet. 2, 418–427.
Cheadle, C., Vawter, M. P., Freed, W. J., and Becker, K. G. (2003) Analysis of microarray data using Z score transformation. J. Mol. Diagn. 5, 73–81.
Hackl, H., Cabo, F. S., Sturn, A., Wolkenhauer, O., and Trajanoski, Z. (2004) Analysis of DNA microarray data. Curr. Top. Med. Chem. 4, 1355–1368.
Irizarry, R. A., Warren, D., Spencer, F., Kim, I. F., Biswal, S., Frank, B. C., et al. (2005) Multiple-laboratory comparison of microarray platforms. Nat. Methods 2, 345–350.)
Kargul, G. J., Dudekula, D. B., Qian, Y., et al. (2001) Verification and initial annotation of the NIA mouse 15K cDNA clone set. Nat. Genet. 28, 17–18.
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© 2007 Humana Press Inc., Totowa, NJ
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Anisimov, S.V. (2007). Application of DNA Microarray Technology to Gerontological Studies. In: Tollefsbol, T.O. (eds) Biological Aging. Methods in Molecular Biology™, vol 371. Humana Press. https://doi.org/10.1007/978-1-59745-361-5_19
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DOI: https://doi.org/10.1007/978-1-59745-361-5_19
Publisher Name: Humana Press
Print ISBN: 978-1-58829-658-0
Online ISBN: 978-1-59745-361-5
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