Summary
A protocol for ligation-dependent cloning using the Flexi Vector method in a 96-well format is described. The complete protocol includes PCR amplification of the desired gene to append Flexi Vector cloning sequences, restriction digestion of the PCR products, ligation of the digested PCR products into a similarly digested acceptor vector, transformation and growth of host cells, analysis of the transformed clones, and storage of a sequence-verified clone. The protocol also includes transfer of the sequence-verified clones into another Flexi Vector plasmid backbone. Smaller numbers of cloning reactions can be undertaken by appropriate scaling of the indicated reaction volumes.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Zhang, C. et al. (2003) Overview of structural genomics: from structure to functionCurr Opin Chem Biol 7, 28–32
Terwilliger, T.C. (2000) Structural genom-ics in North AmericaNat Struct Biol 7 Suppl, 935–939
Chandonia, J.M. et al. (2006) The impact of structural genomics: expectations and outcomesScience 311, 347–351
Becker, K.F. et al. (2006) Clinical proteom-ics: new trends for protein microarraysCurr Med Chem 13, 1831–1837
Lundstrom, K. (2006) Structural genom-ics: the ultimate approach for rational drug designMol Biotechnol 34, 205–212
Schnappinger, D. (2007) Genomics of host-pathogen interactionsProg Drug Res 64, 311, 313–343
Su, Z. et al. (2007) Emerging bacterial enzyme targetsCurr Opin Investig Drugs 8, 140–149
Green, R.D. et al. (2007) Identifying the future needs for long-term USDA efforts in agricultural animal genomicsInt J Biol Sci 3, 185–191
Venter, J.C. et al. (2004) Environmental genome shotgun sequencing of the Sargasso SeaScience 304, 66–74
Witt, A.E. et al. (2006) Functional pro-teomics approach to investigate the biological activities of cDNAs implicated in breast cancerJ Proteome Res 5, 599–610
Chapple, S.D. et al. (2006) Multiplexed expression and screening for recombinant protein production in mammalian cellsBMC Biotechnol 6, 49
Thao, S. et al. (2004) Results from high-throughput DNA cloning of Arabidop-sis thaliana target genes by site-specific recombinationJ Struct Funct Genomics 5, 267–276
Alzari, P.M. et al. (2006) Implementation of semi-automated cloning and prokaryotic expression screening: the impact of SPINEActa Crystallogr D Biol Crystallogr 62, 1103–1113
Stols, L. et al. (2002) A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage siteProtein Expr Purif 25, 8–15
de Jong, R.N. et al. (2007) Enzyme free cloning for high throughput gene cloning and expressionJ Struct Funct Genomics
Doyle, S.A. (2005) High-throughput cloning for proteomics researchMethods Mol Biol 310, 107–113
Blommel, P.G. et al. (2006) High efficiency single step production of expression plas-mids from cDNA clones using the Flexi Vector cloning systemProtein Expr Purif 47, 562–570
Jeon, W.B. et al. (2005) High-throughput purification and quality assurance of Arabi-dopsis thaliana proteins for eukaryotic structural genomicsJ Struct Funct Genomics 6, 143–147
Gallagher, S.R. et al. (2006) In: Current Protocols in Molecular Biology, Vol. Appendix 3D A.3D.1-A.3D.21. Wiley Interscience: Hoboken, NJ
Sambrook, J., Russell, D.W. (2001) In: Molecular Cloning: A Laboratory Manual, Vol. 3, 3rd ed. 15.44–15.48. Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY
Part# TM254. (2005) Promega Corporation: Madison, WI
Yoshimura, H. et al. (1986) Biological characteristics of palindromic DNA (iiJ Gen Appl Microbiol 32, 393–404
Kapust, R.B. et al. (2002) The P1′ specificity of tobacco etch virus proteaseBiochem Biophys Res Commun 294, 949–955
Thao, S. et al. (2004) Results from high-throughput DNA cloning of Arabidopsis thaliana target genes using site-specific recombinationJ Struct Funct Genomics 5, 267–276
Acknowledgments
Protein Structure Initiative Grant 1U54 GM074901 (J.L. Mar-kley, PI; G.N. Phillips, Jr. and B.G. Fox, Co-Investigators) and a Sponsored Research Agreement from Promega Corporation (B.G. Fox, PI) generously supported this research. The authors enthusiastically acknowledge the efforts all other coworkers of the University of Wisconsin Center for Eukaryotic Structural Genomics for their work in establishing our complete pipeline effort and thank Dr. Mike Slater (Promega) for many useful scientific discussions.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2009 Humana Press, a part of Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Blommel, P.G., Martin, P.A., Seder, K.D., Wrobel, R.L., Fox, B.G. (2009). Flexi Vector Cloning. In: Doyle, S.A. (eds) High Throughput Protein Expression and Purification. Methods in Molecular Biology, vol 498. Humana Press. https://doi.org/10.1007/978-1-59745-196-3_4
Download citation
DOI: https://doi.org/10.1007/978-1-59745-196-3_4
Publisher Name: Humana Press
Print ISBN: 978-1-58829-879-9
Online ISBN: 978-1-59745-196-3
eBook Packages: Springer Protocols