Abstract
Yeast two-hybrid systems are powerful tools to identify novel protein–protein interactions and have been extensively used to study viral protein interactions. The most commonly used systems are GAL4-based and LexA-based systems. Over the last decade, a range of modifications and improvements have been made to the original yeast two-hybrid system to expand the scope of molecular interaction assays and to eliminate false positives. Detailed protocols are provided for yeast strain storage, yeast transformation, yeast mating, preparation of growth and selection medium, quantitative reporter gene assays (α- and β-galactosidase liquid assays) and detection of fusion protein by Western blot.
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References
1. Golemis, E. A., Tew, K. D., and Dadke, D. (2002) Protein interaction-targeted drug discovery: evaluating critical issues. Biotechniques 32, 636–642.
2. Fields, S. and Song, O. (1989) A novel genetic system to detect protein-protein interactions. Nature 340, 245–246.
3. Bartel, P. L., Roecklein, J. A., SenGupta, D., and Fields, S. (1996) A protein linkage map of Escherichia coli bacteriophage T7. Nat. Genet. 12, 72–77.
4. McCraith, S., Holtzman, T., Moss, B., and Fields, S. (2000) Genome-wide analysis of vaccinia virus protein-protein interactions. Proc. Natl. Acad. Sci. USA 97, 4879–4884.
5. Choi, I. R., Stenger, D. C., and French, R. (2000) Multiple interactions among proteins encoded by the mite-transmitted wheat streak mosaic tritimovirus. Virology 267, 185–198.
6. Flajolet, M., Rotondo, G., Daviet, L., Bergametti, F., Inchauspe, G., Tiollais, P., Transy, C., and Legrain, P. (2000) A genomic approach of the hepatitis C virus generates a protein interaction map. Gene 242, 369–379.
7. Guo, D., Rajamaki, M. L., Saarma, M., and Valkonen, J. P. T. (2001) Towards a protein interaction map of potyviruses: protein interaction matrixes of two potyviruses based on the yeast two-hybrid system. J. Gen. Virol. 82, 935–939.
8. Kang, S. H., Lim, W. S., and Kim, K. H. (2004) A protein interaction map of soybean mosaic virus strain G7H based on the yeast two-hybrid system. Mol. Cells 18, 122–126.
9. Zell, R., Seitz, S., Henke, A., Munder, T., and Wutzler, P. (2005) Linkage map of protein-protein interactions of Porcine teschovirus. J. Gen. Virol. 86, 2763–2768.
10. Uetz, P., Dong, Y. A., Zeretzke, C., Atzler, C., Baiker, A., Berger, B., et al. (2006) Herpesviral protein networks and their interaction with the human proteome. Science 311, 239–242.
11. Ito, T., Tashiro, K., Muta, S., Ozawa, R., Chiba, T., Nishizawa, M., et al. (2000) Toward a protein–protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc. Natl. Acad. Sci. USA 97, 1143–1147.
12. Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., et al. (2000) A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae. Nature 403, 623–627.
13. Rain, J. C., Selig, L., De, R. H., Battaglia, V., Reverdy, C., Simon, S., et al. (2001) The protein–protein interaction map of Helicobacter pylori. Nature 409, 211–215.
14. Giot, L., Bader, J. S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., et al., (2003) A protein interaction map of Drosophila melanogaster. Science 302, 1727–1736.
15. Li, S., Armstrong, C. M., Bertin, N., Ge, H., Milstein, S., Boxem, M., et al. (2004) A map of the interactome network of the metazoan C. elegans. Science 303, 540–543.
16. LaCount, D. J., Vignali, M., Chettier, R., Phansalkar, A., Bell, R., Hesselberth, J. R., et al. (2005) A protein interaction network of the malaria parasite Plasmodium falciparum. Nature 438, 103–107.
17. Rual, J. F., Venkatesan, K., Hao, T., Hirozane-Kishikawa, T., Dricot, A., Li, N., et al. (2005) Towards a proteome-scale map of the human protein–protein interaction network. Nature 437, 1173–1178.
18. Stelzl, U., Worm, U., Lalowski, M., Haenig, C., Brembeck, F. H., Goehler, H., et al. (2005)A human protein–protein interaction network: a resource for annotating the proteome. Cell 122, 957–968.
19. Chien, C. T., Bartel, P. L., Sternglanz, R., and Fields, S. (1991) The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. Proc. Natl. Acad. Sci. USA 88, 9578–9582.
20. Gyuris, J., Golemis, E., Chertkov, H., and Brent, R. (1993) Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2. Cell 75, 791–803.
21. Vojtek, A. B., Hollenberg, S. M., and Cooper, J. A. (1993) Mammalian Ras interacts directly with the serine/threonine kinase Raf. Cell 74, 205–214.
22. Hollenberg, S. M., Sternglanz, R., Cheng, P. F., and Weintraub, H. (1995) Identification of a new family of tissue-specific basic helix-loop-helix proteins with a two-hybrid system. Mol. Cell Biol. 15, 3813–3822.
23. Li, J. J. and Herskowitz, I. (1993) Isolation of ORC6, a component of the yeast origin recognition complex by a one-hybrid system. Science 262, 1870–1874.
24. SenGupta, D. J., Zhang, B., Kraemer, B., Pochart, P., Fields, S., and Wickens, M. (1996) A three-hybrid system to detect RNA-protein interactions in vivo. Proc. Natl. Acad. Sci. USA 93, 8496–8501.
25. Putz, U., Skehel, P., and Kuhl, D. (1996) A tri-hybrid system for the analysis and detection of RNA–protein interactions. Nucleic Acids Res. 24, 4838–4840.
26. Zhang, J. and Lautar, S. (1996) A yeast three-hybrid method to clone ternary protein complex components. Anal. Biochem. 242, 68–72.
27. Dalton, S., and Treisman, R. (1992) Characterization of SAP-1, a protein recruited by serum response factor to the c-fos serum response element. Cell 68, 597–612.
28. Naya, F. J., Stellrecht, C. M., and Tsai, M. J. (1995) Tissue-specific regulation of the insulin gene by a novel basic helix-loop-helix transcription factor. Genes Dev. 9, 1009–1019.
29. Aronheim, A., Zandi, E., Hennemann, H., Elledge, S. J., and Karin, M. (1997) Isolation of an AP-1 repressor by a novel method for detecting protein-protein interactions. Mol. Cell Biol. 17, 3094–3102.
30. Broder, Y. C., Katz, S., and Aronheim, A. (1998) The ras recruitment system, a novel approach to the study of protein–protein interactions. Curr. Biol. 8:1121–1124.
31. Johnsson, N., and Varshavsky, A. (1994) Split ubiquitin as a sensor of protein interactions in vivo. Proc. Natl. Acad. Sci. USA 91, 10340–10344.
32. Stagljar, I., Korostensky, C., Johnsson, N., and Te, H. S. (1998) A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo. Proc. Natl. Acad. Sci. USA 95, 5187–5192.
33. Leanna, C. A., and Hannink, M. (1996) The reverse two-hybrid system: a genetic scheme for selection against specific protein/protein interactions. Nucleic Acids Res. 24, 3341–3347.
34. Vidal, M., Braun, P., Chen, E., Boeke, J. D., and Harlow, E. (1996) Genetic characterization of a mammalian protein–protein interaction domain by using a yeast reverse two-hybrid system. Proc. Natl. Acad. Sci. USA 93, 10321–10326.
35. Joung, J. K., Ramm, E. I., and Pabo, C. O. (2000) A bacterial two-hybrid selection system for studying protein–DNA and protein–protein interactions. Proc. Natl. Acad. Sci. USA 97, 7382–7387.
36. Luo, Y., Batalao, A., Zhou, H., and Zhu, L. (1997) Mammalian two-hybrid system: a complementary approach to the yeast two-hybrid system. Biotechniques 22, 350–352.
37. James, P., Halladay, J., and Craig, E. A. (1996) Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144, 1425–1436.
38. Harper, J. W., Adami, G. R., Wei, N., Keyomarsi, K., and Elledge, S. J. (1993) The p21 Cdk-interacting protein Cip1 is a potent inhibitor of G1 cyclin-dependent kinases. Cell 75, 805–816.
39. Sambrook, J., and Russell, D.W. (2001) Molecular Cloning: A laboratory manual, 3rd ed., vol. 1. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
40. Miller, J.H. (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York.
41. Estojak, J., Brent, R., and Golemis, E. A. (1995) Correlation of two-hybrid affinity data with in vitro measurements. Mol. Cell. Biol. 10, 5820–5829.
Acknowledgments
We thank Dr Qingzhen Liu for critically reading the manuscript and Xiaoyun Wu for compiling the reference list. Deyin Guo's laboratory is supported by the Luojia Professorship Program of Wuhan University and China National Science Foundation (NSFC-30570394 and 30270313). The YTHS studies on plant virus proteins of M.L. Rajamäki and J.P.T. Valkonen are funded by the Academy of Finland (grant 204104, 1102003, 1102134 and 1110797).
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Guo, D., Rajamäki, ML., Valkonen, J. (2008). Protein–Protein Interactions: The Yeast Two-Hybrid System. In: Foster, G.D., Johansen, I.E., Hong, Y., Nagy, P.D. (eds) Plant Virology Protocols. Methods in Molecular Biology™, vol 451. Humana Press. https://doi.org/10.1007/978-1-59745-102-4_29
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DOI: https://doi.org/10.1007/978-1-59745-102-4_29
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