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Phytochrome Regulation of Seed Germination

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Phytochromes

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2026))

Abstract

Seed germination assays consist of counting the number of germinated seeds, defined as seeds in which the radicle has ruptured the endosperm and emerged from the seed coat. In Arabidopsis seed germination assays, Arabidopsis seeds are surface-sterilized, plated on agar plates containing test compounds, and incubated at specific temperatures under specific light conditions, after which the germinated seeds are counted, either with the naked eye or under a microscope. This chapter describes step-by-step protocols for Arabidopsis seed germination assays under phytochrome-dependent conditions.

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References

  1. Finch-Savage WE, Leubner-Metzger G (2006) Seed dormancy and the control of germination. New Phytol 171:501–523

    Article  CAS  Google Scholar 

  2. Holdsworth MJ, Bentsink L, Soppe WJJ (2008) Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination. New Phytol 179:33–54

    Article  CAS  Google Scholar 

  3. Hilhorst HWM (2007) Definitions and hypotheses of seed dormancy. In: Bradford KJ, Nonogaki H (eds) Seed development, dormancy and germination. Blackwell Publishing Ltd, Oxford, pp 50–71

    Chapter  Google Scholar 

  4. Shinomura T, Nagatani A, Chory J, Furuya M (1994) The induction of seed germination in Arabidopsis thaliana is regulated principally by phytochrome B and secondarily by phytochrome A. Plant Physiol 104:363–371

    Article  CAS  Google Scholar 

  5. Shinomura T, Nagatani A, Hanzawa H, Kubota M, Watanabe M, Furuya M (1996) Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana. Proc Natl Acad Sci U S A 93:8129–8133

    Article  CAS  Google Scholar 

  6. Chory J, Chatterjee M, Cook RK et al (1996) From seed germination to flowering, light controls plant development via the pigment phytochrome. Proc Natl Acad Sci U S A 93:12066–12071

    Article  CAS  Google Scholar 

  7. Mathews S (2006) Phytochrome-mediated development in land plants: red light sensing evolves to meet the challenges of changing light environments. Mol Ecol 15:3483–3503

    Article  CAS  Google Scholar 

  8. Oh E, Kim J, Park E, Kim J-I, Kang C, Choi G (2004) PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell 16:3045–3058

    Article  CAS  Google Scholar 

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Acknowledgments

We thank the members of our laboratory for many technical tips. This work was supported in part by grants from the National Research Foundation of Korea (2018R1A3B1052617) to G.C.

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Correspondence to Giltsu Choi .

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Song, K., Choi, G. (2019). Phytochrome Regulation of Seed Germination. In: Hiltbrunner, A. (eds) Phytochromes. Methods in Molecular Biology, vol 2026. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9612-4_12

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  • DOI: https://doi.org/10.1007/978-1-4939-9612-4_12

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-9611-7

  • Online ISBN: 978-1-4939-9612-4

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