Skip to main content

Detecting Interactions of Membrane Proteins: The Split-Ubiquitin System

  • Protocol
  • First Online:
Two-Hybrid Systems

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1794))

Abstract

The in vivo analysis of protein–protein interactions (PPIs) is a critical factor for gaining insights into cellular mechanisms and their biological functions. To that end, a constantly growing number of genetic tools has been established, some of which are using baker’s yeast (Saccharomyces cerevisiae) as a model organism. Here, we provide a detailed protocol for the yeast mating-based split-ubiquitin system (mbSUS) to study binary interactions among or with full-length membrane proteins in their native subcellular environment. The system is based on the reassembly of two autonomously non-functional ubiquitin moieties attached to proteins of interest (POIs) into a native-like molecule followed by the release of a transcription factor. Upon its nuclear import, the activation of reporter gene expression gives a visual output via growth on interaction-selective media. Additionally, we apply a modification of the classical split-ubiquitin technique called CytoSUS that detects interactions of non-membrane/soluble proteins in their full-length form via translational fusion of an ER membrane anchor.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Xing S, Wallmeroth N, Berendzen KW, Grefen C (2016) Techniques for the analysis of protein-protein interactions in vivo. Plant Physiol 171(2):727–758

    PubMed  PubMed Central  CAS  Google Scholar 

  2. Fields S, Song O (1989) A novel genetic system to detect protein-protein interactions. Nature 340(6230):245–246

    Article  CAS  PubMed  Google Scholar 

  3. Stynen B, Tournu H, Tavernier J, Van Dijck P (2012) Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system. Microbiol Mol Biol Rev 76(2):331–382

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Johnsson N, Varshavsky A (1994) Split ubiquitin as a sensor of protein interactions in vivo. Proc Natl Acad Sci U S A 91(22):10340–10344

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Stagljar I, Korostensky C, Johnsson N, te Heesen S (1998) A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo. Proc Natl Acad Sci U S A 95(9):5187–5192

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Obrdlik P et al (2004) K+ channel interactions detected by a genetic system optimized for systematic studies of membrane protein interactions. Proc Natl Acad Sci U S A 101(33):12242–12247

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Grefen C et al (2008) Subcellular localization and in vivo interactions of the Arabidopsis thaliana ethylene receptor family members. Mol Plant 1(2):308–320

    Article  CAS  PubMed  Google Scholar 

  8. Grefen C et al (2010) A novel motif essential for SNARE interaction with the K(+) channel KC1 and channel gating in Arabidopsis. Plant Cell 22(9):3076–3092

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Grefen C, Blatt MR (2012) Do calcineurin B-like proteins interact independently of the serine threonine kinase CIPK23 with the K+ channel AKT1? Lessons learned from a menage a trois. Plant Physiol 159(3):915–919

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Xing S et al (2017) Loss of GET pathway orthologs in Arabidopsis thaliana causes root hair growth defects and affects SNARE abundance. Proc Natl Acad Sci U S A 114(8):E1544–E1553

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Grefen C, Lalonde S, Obrdlik P (2007) Split-ubiquitin system for identifying protein-protein interactions in membrane and full-length proteins. Curr Protoc Neurosci. Chapter 5:Unit 5 27

    Google Scholar 

  12. Möckli N et al (2007) Yeast split-ubiquitin-based cytosolic screening system to detect interactions between transcriptionally active proteins. BioTechniques 42(6):725–730

    Article  CAS  PubMed  Google Scholar 

  13. Karnik R et al (2015) Binding of SEC11 indicates its role in SNARE recycling after vesicle fusion and identifies two pathways for vesicular traffic to the plasma membrane. Plant Cell 27(3):675–694

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Grefen C, Obrdlik P, Harter K (2009) The determination of protein-protein interactions by the mating-based split-ubiquitin system (mbSUS). Methods Mol Biol 479:217–233

    Article  CAS  PubMed  Google Scholar 

  15. Ludewig U et al (2003) Homo- and hetero-oligomerization of ammonium transporter-1 NH4 uniporters. J Biol Chem 278(46):45603–45610

    Article  CAS  PubMed  Google Scholar 

  16. Raquet X, Eckert JH, Muller S, Johnsson N (2001) Detection of altered protein conformations in living cells. J Mol Biol 305(4):927–938

    Article  CAS  PubMed  Google Scholar 

  17. Grefen C (2014) The split-ubiquitin system for the analysis of three-component interactions. Methods Mol Biol 1062:659–678

    Article  CAS  PubMed  Google Scholar 

  18. Jones AM et al (2014) Border control--a membrane-linked interactome of Arabidopsis. Science 344(6185):711–716

    Article  CAS  PubMed  Google Scholar 

  19. Karnik A, Karnik R, Grefen C (2013) SDM-assist software to design site-directed mutagenesis primers introducing “silent” restriction sites. BMC Bioinformatics 14:105

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Christopher Grefen .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Asseck, L.Y., Grefen, C. (2018). Detecting Interactions of Membrane Proteins: The Split-Ubiquitin System. In: Oñate-Sánchez, L. (eds) Two-Hybrid Systems. Methods in Molecular Biology, vol 1794. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7871-7_4

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-7871-7_4

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7870-0

  • Online ISBN: 978-1-4939-7871-7

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics