Skip to main content

Gene Suppression in Schistosomes Using RNAi

  • Protocol
  • First Online:
Parasite Genomics Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1201))

Abstract

Schistosomiasis is a neglected tropical disease responsible for the death of more than 300,000 people every year. The disease is caused by intravascular parasitic platyhelminths called schistosomes. Treatment and control of schistosomiasis rely on a single drug, praziquantel, and concern exists over the possible emergence of resistance to this drug. The recent completion of the genome sequences of the three main worm species that cause schistosomiasis in humans has raised hope for the development of new interventions to treat the disease. RNA interference (RNAi), a mechanism by which gene-specific double-stranded RNA (dsRNA) triggers degradation of homologous mRNA transcripts, has emerged as an important tool to evaluate and validate new potential drug targets. In addition, RNAi has been used to explore the basic biology of these debilitating parasites. RNAi can be achieved in all stages of the parasite’s life cycle in which it has been tested. In this review, we describe methods for applying RNAi to suppress gene expression in the intra-mammalian life stages (adults and schistosomula) of Schistosoma mansoni. We describe procedures for isolating and culturing the parasites, preparing and delivering dsRNA targeting a specific gene, as well as a procedure to evaluate gene suppression by quantitative real-time PCR.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Steinmann P, Keiser J, Bos R, Tanner M, Utzinger J (2006) Schistosomiasis and water resources development: systematic review, meta-analysis, and estimates of people at risk. Lancet Infect Dis 6:411–425

    Article  PubMed  Google Scholar 

  2. Ross AG, Bartley PB, Sleigh AC, Olds GR, Li Y, Williams GM et al (2002) Schistosomiasis. N Engl J Med 346:1212–1220

    Article  PubMed  Google Scholar 

  3. Abdul-Ghani R, Loutfy N, el-Sahn A, Hassan A (2009) Current chemotherapy arsenal for schistosomiasis mansoni: alternatives and challenges. Parasitol Res 104:955–965

    Article  PubMed  Google Scholar 

  4. Doenhoff MJ, Pica-Mattoccia L (2006) Praziquantel for the treatment of schistosomiasis: its use for control in areas with endemic disease and prospects for drug resistance. Expert Rev Anti Infect Ther 4:199–210

    Article  CAS  PubMed  Google Scholar 

  5. Melman SD, Steinauer ML, Cunningham C, Kubatko LS, Mwangi IN, Wynn NB et al (2009) Reduced susceptibility to praziquantel among naturally occurring Kenyan isolates of Schistosoma mansoni. PLoS Negl Trop Dis 3:e504

    Article  PubMed Central  PubMed  Google Scholar 

  6. Doenhoff MJ, Cioli D, Utzinger J (2008) Praziquantel: mechanisms of action, resistance and new derivatives for schistosomiasis. Curr Opin Infect Dis 21:659–667

    Article  CAS  PubMed  Google Scholar 

  7. Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC et al (2009) The genome of the blood fluke Schistosoma mansoni. Nature 460:352–358

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  8. Schistosoma japonicum Genome Sequencing and Functional Analysis and Consortium (2009) The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature 460: 345–351

    Article  Google Scholar 

  9. Young ND, Jex AR, Li B, Liu S, Yang L, Xiong Z et al (2012) Whole-genome sequence of Schistosoma haematobium. Nat Genet 44: 221–225

    Article  CAS  PubMed  Google Scholar 

  10. Skelly PJ, Da’dara A, Harn D (2003) Suppression of cathepsin B expression in Schistosoma mansoni by RNA interference. Int J Parasitol 33: 363–369

    Article  CAS  PubMed  Google Scholar 

  11. Boyle JP, Wu XJ, Shoemaker CB, Yoshino TP (2003) Using RNA interference to manipulate endogenous gene expression in Schistosoma mansoni sporocysts. Mol Biochem Parasitol 128:205–215

    Article  CAS  PubMed  Google Scholar 

  12. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans [see comments]. Nature 391:806–811

    Article  CAS  PubMed  Google Scholar 

  13. Tabara H, Grishok A, Mello CC (1998) RNAi in C. elegans: soaking in the genome sequence. Science 282:430–431

    Article  CAS  PubMed  Google Scholar 

  14. Hunter CP (1999) Genetics: a touch of elegance with RNAi. Curr Biol 9:R440–R442

    Article  CAS  PubMed  Google Scholar 

  15. Kennerdell JR, Carthew RW (1998) Use of dsRNA-mediated genetic interference to demonstrate that frizzled and frizzled 2 act in the wingless pathway. Cell 95:1017–1026

    Article  CAS  PubMed  Google Scholar 

  16. Wianny F, Zernicka-Goetz M (2000) Specific interference with gene function by double-stranded RNA in early mouse development. Nat Cell Biol 2:70–75

    Article  CAS  PubMed  Google Scholar 

  17. Schoppmeier M, Damen WG (2001) Double-stranded RNA interference in the spider Cupiennius salei: the role of Distal-less is evolutionarily conserved in arthropod appendage formation. Dev Genes Evol 211:76–82

    Article  CAS  PubMed  Google Scholar 

  18. Morris JC, Wang Z, Drew ME, Englund PT (2002) Glycolysis modulates trypanosome glycoprotein expression as revealed by an RNAi library. EMBO J 21:4429–4438

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  19. Shi H, Djikeng A, Tschudi C, Ullu E (2004) Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance. Mol Cell Biol 24: 420–427

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  20. Petrocca F, Lieberman J (2011) Promise and challenge of RNA interference-based therapy for cancer. J Clin Oncol 29:747–754

    Article  CAS  PubMed  Google Scholar 

  21. Nemunaitis J, Rao DD, Liu SH, Brunicardi FC (2011) Personalized cancer approach: using RNA interference technology. World J Surg 35(8):1700–1714

    Article  PubMed  Google Scholar 

  22. Davidson BL, McCray PB Jr (2011) Current prospects for RNA interference-based therapies. Nat Rev Genet 12:329–340

    Article  CAS  PubMed  Google Scholar 

  23. Hong-Geller E, Micheva-Viteva SN (2010) Functional gene discovery using RNA interference-based genomic screens to combat pathogen infection. Curr Drug Discov Technol 7:86–94

    Article  CAS  PubMed  Google Scholar 

  24. Kuntz AN, Davioud-Charvet E, Sayed AA, Califf LL, Dessolin J, Arner ES et al (2007) Thioredoxin glutathione reductase from Schistosoma mansoni: an essential parasite enzyme and a key drug target. PLoS Med 4:e206

    Article  PubMed Central  PubMed  Google Scholar 

  25. Bhardwaj R, Krautz-Peterson G, Da’dara A, Tzipori S, Skelly PJ (2011) Tegumental phosphodiesterase SmNPP-5 is a virulence factor for schistosomes. Infect Immun 79:4276–4284

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  26. Ndegwa D, Krautz-Peterson G, Skelly PJ (2007) Protocols for gene silencing in schistosomes. Exp Parasitol 117:284–291

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  27. Krautz-Peterson G, Radwanska M, Ndegwa D, Shoemaker CB, Skelly PJ (2007) Optimizing gene suppression in schistosomes using RNA interference. Mol Biochem Parasitol 153: 194–202

    Article  CAS  PubMed  Google Scholar 

  28. Stefanic S, Dvorak J, Horn M, Braschi S, Sojka D, Ruelas DS et al (2010) RNA interference in Schistosoma mansoni schistosomula: selectivity, sensitivity and operation for larger-scale screening. PLoS Negl Trop Dis 4:e850

    Article  PubMed Central  PubMed  Google Scholar 

  29. Mourao MM, Dinguirard N, Franco GR, Yoshino TP (2009) Phenotypic screen of early-developing larvae of the blood fluke, schistosoma mansoni, using RNA interference. PLoS Negl Trop Dis 3:e502

    Article  CAS  PubMed  Google Scholar 

  30. Krautz-Peterson G, Simoes M, Faghiri Z, Ndegwa D, Oliveira G, Shoemaker CB et al (2010) Suppressing glucose transporter gene expression in schistosomes impairs parasite feeding and decreases survival in the mammalian host. PLoS Pathog 6:e1000932

    Article  PubMed Central  PubMed  Google Scholar 

  31. Faghiri Z, Skelly PJ (2009) The role of tegumental aquaporin from the human parasitic worm, Schistosoma mansoni, in osmoregulation and drug uptake. FASEB J 23:2780–2789

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  32. Correnti JM, Brindley PJ, Pearce EJ (2005) Long-term suppression of cathepsin B levels by RNA interference retards schistosome growth. Mol Biochem Parasitol 143: 209–215

    Article  CAS  PubMed  Google Scholar 

  33. Krautz-Peterson G, Bhardwaj R, Faghiri Z, Tararam CA, Skelly PJ (2010) RNA interference in schistosomes: machinery and methodology. Parasitology 137:485–495

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  34. Rinaldi G, Morales ME, Alrefaei YN, Cancela M, Castillo E, Dalton JP et al (2009) RNA interference targeting leucine aminopeptidase blocks hatching of Schistosoma mansoni eggs. Mol Biochem Parasitol 167:118–126

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  35. Lewis F (2001) Schistosomiasis. Curr Protoc Immunol Chapter 19: Unit 19 11

    Google Scholar 

  36. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25:402–408

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by the National Institutes of Health-National Institute of Allergy and Infectious Diseases (grant number AI-056273). Schistosome-infected snails were provided by the Biomedical Research Institute through the National Institutes of Health (NIAID contract number HHSN272201000009I).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Patrick J. Skelly .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer Science+Business Media New York

About this protocol

Cite this protocol

Da’dara, A.A., Skelly, P.J. (2015). Gene Suppression in Schistosomes Using RNAi. In: Peacock, C. (eds) Parasite Genomics Protocols. Methods in Molecular Biology, vol 1201. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-1438-8_8

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-1438-8_8

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-1437-1

  • Online ISBN: 978-1-4939-1438-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics