Skip to main content

The Suitability of Molecular and Morphological Evidence in Reconstructing Plant Phylogeny

  • Chapter
Molecular Systematics of Plants

Abstract

Renewed interest in phylogenies over the last few decades coincides with a growing sense that it will actually be possible to obtain an accurate picture of evolutionary history. Indeed, the prospects of retrieving phylogeny now seem better than ever, owing to basic theoretical advance (due mainly to Hennig, 1966), the availability of computer programs that can handle large data sets, and the accessibility of new sources of evidence, especially molecular characters.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Ahlquist, J.E., Bledsoe, A.H., Sheldon, F.H., and Sibley, C.G. (1987) DNA hybridization and avian systematics. Auk 104, 556–563.

    Google Scholar 

  • Appels, R., and Honeycutt, R.L. (1986) rDNA: evolution over a billion years. In: DNA Systematics Volume II: Plants (ed. S.K. Dutta), CRC Press, Boca Raton, FL, pp. 81–135.

    Google Scholar 

  • Archie, J.W. (1989a) A randomization test for phylogenetic information in systematic data. Syst. Zool. 38, 239–252.

    Google Scholar 

  • Archie, J.W. (1989b) Phylogenies of plant families: a demonstration of phylogenetic randomness in DNA sequence data derived from proteins. Evolution 43, 1796–1800.

    CAS  Google Scholar 

  • Avise, J.C. (1989) Gene trees and organismal histories: a phylogenetic approach to population biology. Evolution 43, 1192–1208.

    Google Scholar 

  • Baldauf, S.L., and Palmer, J.D. (1990) Evolutionary transfer of the chloroplast tufA gene to the nucleus. Nature 334, 262–265.

    Google Scholar 

  • Barrett, M., Donoghue, M.J., and Sober, E. (1991) Against consensus. Syst. Zool., in press.

    Google Scholar 

  • Bremer, B., and Bremer, K. (1989) Cladistic analysis of blue-green procaryote interrelationships and chloroplast origin based on 16S rRNA oligonucleotide catalogues. J. Evol. Biol. 2, 13–30.

    Google Scholar 

  • Bremer, K. (1987) Tribal interrelationships of the Asteraceae. Cladistics 3, 210–253.

    Google Scholar 

  • Bremer, K. (1988) The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42, 795–803.

    CAS  Google Scholar 

  • Bremer, K., Humphries, C.J., Mishler, B.D., and Churchill, S.P. (1987) On cladistic relationships in green plants. Taxon 36, 339–349.

    Google Scholar 

  • Britten, R.J. (1986) Rates of DNA sequence evolution differ between taxonomic groups. Science 231, 1393–1398.

    PubMed  CAS  Google Scholar 

  • Brown, W.M., George, M., and Wilson, A.C. (1979) Rapid evolution of animal mitochondrial DNA. Proc. Natl. Acad. Sci. USA 76, 1967–1971.

    PubMed  CAS  Google Scholar 

  • Carpenter, J.M. (1988) Choosing among multiple equally parsimonious cladograms. Cladistics 4, 291–296.

    Google Scholar 

  • Clegg, M.T. (1990) Dating the monocot-dicot divergence. Trends Ecol. Evol. 5, 1–2.

    Google Scholar 

  • Cracraft, J., and Mindell, D.P. (1989) The early history of modern birds: a comparison of molecular and morphological evidence. In: The Hierarchy of Life (eds. B. Fernholm, K. Bremer, and H. Jornvall), Elsevier, Amsterdam, pp. 389–403.

    Google Scholar 

  • Crane, P.R. (1985) Phylogenetic analysis of seed plants and the origin of angiosperms. Ann. Missouri Bot. Gard. 72, 716–793.

    Google Scholar 

  • Davis, J.I. (1983) Phenotypic plasticity and the selection of taxonomic characters in Puccinellia (Poaceae). Syst. Bot. 8, 341–353.

    Google Scholar 

  • Davis, J.I. (1987) Genetic and environmental determination of leaf epidermal anatomy in Puccinellia (Poaceae). Amer. J. Bot. 74, 1744–1749.

    Google Scholar 

  • DeBry, R.W., and Slade, N.A. (1985) Cladistic analysis of restriction endonuclease cleavage maps within a maximum-likelihood framework. Syst. Zool. 34, 21–34.

    Google Scholar 

  • Donoghue, M.J. (1983) The phylogenetic relationships of Viburnum. In: Advances in Cladistics, Vol. 2 (eds. N.I. Platnick and V.A. Funk), Columbia University Press, New York, pp. 143–166.

    Google Scholar 

  • Donoghue, M.J. (1989) Phylogenies and the analysis of evolutionary sequences, with examples from seed plants. Evolution 43, 1137–1156.

    Google Scholar 

  • Donoghue, M.J. (1991) The trouble with homology. In: Keywords in Evolutionary Biology (eds. E. Fox-Keller and E. Lloyd), Harvard University Press, Cambridge, in press.

    Google Scholar 

  • Donoghue, M.J., and Cantino, P.D. (1988) Paraphyly, ancestors, and the goals of taxonomy: a botanical defense of cladism. Bot. Rev. 54, 107–128.

    Google Scholar 

  • Donoghue, M.J., and Doyle, J.A. (1989) Phylogenetic studies of seed plants and angiosperms based on morphological characters. In: The Hierarchy of Life (eds. B. Fernholm, K. Bremer, and H. Jornvall), Elsevier, Amsterdam, pp. 181–193.

    Google Scholar 

  • Donoghue, M.J., Doyle, J.A., Gauthier, J., Kluge, A.G., and Rowe, T. (1989) The importance of fossils in phylogeny reconstruction. Ann. Rev. Ecol. Syst. 20, 431–460.

    Google Scholar 

  • Downie, S.R., Olmstead, R.G., Zurawski, G., Soltis, D.E., Soltis, P.S., Watson, J.C., and Palmer, J.D. (1991) Six independent losses of the chloroplast DNA rpl2 intron in dicotyledons: molecular and phylogenetic implications. Evolution, in press.

    Google Scholar 

  • Doyle, J.A., and Donoghue, M.J. (1986) Seed plant phylogeny and the origin of angiosperms: an experimental cladistic approach. Bot. Rev. 52, 321–431.

    Google Scholar 

  • Doyle, J.J. (1987) Plant systematics at the DNA level: promises and pitfalls. Int. Org. Plant Biosyst. Newsl. 8, 3–7.

    Google Scholar 

  • Doyle, J.J. (1991) Evolution of higher-plant glutamine synthetase genes: tissue specificity as a criterion for predicting orthology. Mol. Biol. Evol., in press.

    Google Scholar 

  • Doyle, J.J., Doyle, J.L., and Brown, A.H.D. (1990) A chloroplast DNA phylogeny of the wild perennial relatives of the soybean (Glycine subgenus Glycine): congruence with morphological and crossing groups. Evolution 44, 371–389.

    CAS  Google Scholar 

  • Farris, J.S. (1969) A successive approximations approach to character weighting. Syst. Zool. 18, 374–385.

    Google Scholar 

  • Felsenstein, J. (1978) Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401–410.

    Google Scholar 

  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.

    Google Scholar 

  • Felsenstein, J. (1988) Phylogenies and quantitative characters. Ann. Rev. Ecol. Syst. 19, 445–471.

    Google Scholar 

  • Fernholm, B., Bremer, K., and Jornvall, H. (eds.) (1989) The Hierarchy of Life, Elsevier, Amsterdam.

    Google Scholar 

  • Gauthier, J., Cannatella, D., de Queiroz, K., Kluge, A.G., and Rowe, T. (1989) Tetrapod phylogeny. In: The Hierarchy of Life (eds. B. Fernholm, K. Bremer, and H. Jornvall), Elsevier, Amsterdam, pp. 337–353.

    Google Scholar 

  • Gillespie, J.H. (1986) Rates of molecular evolution. Ann. Rev. Ecol. Syst. 17, 637–665.

    Google Scholar 

  • Golenberg, E. M., Giannasi, D.E., Clegg, M.T., Smiley, C.J., Durbin, M., Henderson, D., and Zurawski, G. (1990) Chloroplast DNA sequence from a Miocene Magnolia species. Nature 344, 656–658.

    PubMed  CAS  Google Scholar 

  • Gottlieb, L.D. (1988) Towards molecular genetics in Clarkia: gene duplications and molecular characterization of PGI genes. Ann. Missouri Bot. Gard. 75, 1169–1179.

    Google Scholar 

  • Gould, S.J. (1985) A clock for evolution. Nat. Hist. 94, 12–25.

    Google Scholar 

  • Gould, S.J., and Lewontin, R.C. (1979) The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme. Proc. Roy. Soc. London [Biol.] 205, 581–598.

    CAS  Google Scholar 

  • Gouy, M., and Li, W.-H. (1989) Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree. Nature 339, 145–147.

    PubMed  CAS  Google Scholar 

  • Hamby, R.K., and Zimmer, E.A. (1988) Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae). Plant Syst. Evol. 34, 393–400.

    Google Scholar 

  • Hennig, W. (1966) Phylogenetic Systematics, University of Illinois Press, Urbana, IL.

    Google Scholar 

  • Hillis, D.M. (1987) Molecular versus morphological approaches to systematics. Ann. Rev. Ecol. Syst. 18, 23–42.

    Google Scholar 

  • Hixson, J.E., and Brown, W.M. (1986) A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution, and phylogenetic implications. Mol. Biol. Evol. 3, 1–18.

    PubMed  CAS  Google Scholar 

  • Holmquist, R., Miyamoto, M.M., and Goodman, M. (1988) Analysis of higher-primate phylogeny from trans version differences in nuclear and mitochondrial DNA by Lake’s methods of evolutionary parsimony and operator metrics. Mol. Biol. Evol. 5, 217–236.

    PubMed  CAS  Google Scholar 

  • Jansen, R.K., and Palmer, J.D. (1987) A chloroplast inversion marks an ancient evolutionary split in the sunflower family (Asteraceae). Proc. Natl. Acad. Sci. USA 84, 5818–5822.

    PubMed  CAS  Google Scholar 

  • Jansen, R.K., Holsinger, K.E., Michaels, H.J., and Palmer, J.D. (1990) Phylogenetic analysis of chloroplast DNA restriction site data at higher taxonomic levels: an example from the Asteraceae. Evolution 44, 2089–2105.

    Google Scholar 

  • Kaplan, D.R. (1984) The concept of homology and its central role in the elucidation of plant systematic relationships. In: Cladistics: Perspectives on the Reconstruction of Evolutionary History (eds. T. Duncan and T. Stuessy), Columbia University Press, New York, pp. 51–69.

    Google Scholar 

  • Kawata, M. (1987) Units and passages: a view for evolutionary biology and ecology. Biol. Phil. 2, 415–434.

    Google Scholar 

  • Kellogg, E.A., and Campbell, C.S. (1987) Phylogenetic analysis of the Gramineae. In: Grass Systematics and Evolution (eds T.R. Soderstrom, K.W. Hilu, C.S. Campbell, and M.E. Barkworth), Smithsonian Institution Press, Washington, DC, pp. 310–322.

    Google Scholar 

  • Kimura, M. (1983) The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge.

    Google Scholar 

  • Kluge, A.G. (1983) Cladistics and the classification of the great apes. In: New Interpretations of Ape and Human Ancestry (eds. R.L. Ciochan and R.S. Corruccini), Plenum Press, New York, pp. 151–177.

    Google Scholar 

  • Kluge, A.J. (1989) A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Bovidae, Serpentes). Syst. Zool. 38, 7–25.

    Google Scholar 

  • Kluge, A.G., and Farris, J.S. (1969) Quantitative phyletics and the evolution of anurans. Syst. Zool. 18, 1–32.

    Google Scholar 

  • Kreitman, M.E., and Aguade, M. (1986) Excess polymorphism at the ADH locus in Drosophila melanogaster. Genetics 114, 93–110.

    PubMed  CAS  Google Scholar 

  • Lake, J.A. (1987) A rate-independent technique for analysis of nucleic acid sequences: evolutionary parsimony. Mol. Biol. Evol. 4, 167–191.

    PubMed  CAS  Google Scholar 

  • Lanyon, S.M. (1988) The stochastic mode of molecular evolution: what consequences for systematic investigations? Auk 105, 565–573.

    Google Scholar 

  • Lavin, M., Doyle, J.J., and Palmer, J.D. (1990) Evolutionary significance of the loss of the chloroplast-DNA inverted repeat in the Leguminosae subfamily Papilionoideae. Evolution 44, 390–402.

    CAS  Google Scholar 

  • Martin, P.G., Boulter, D., and Penny, D. (1985) Angiosperm phylogeny studied using sequences of five macromolecules. Taxon 34, 393–400.

    Google Scholar 

  • Martin, P.G., Dowd, J.M., and Stone, S.J.L. (1983) The study of plant phylogeny using amino acid sequences of ribulose-1,5-bisphosphate carboxylase. II. The analysis of small subunit data to form phylogenetic trees. Austr. J. Bot. 31, 411–419.

    CAS  Google Scholar 

  • Mayr, E. (1969) Principles of Systematic Zoology, McGraw-Hill, New York.

    Google Scholar 

  • Melnick, D.J. (1990) Molecules, evolution and time. Trends Ecol. Evol. 5, 172–173.

    Google Scholar 

  • Mickevich, M.F., and Weller, S.J. (1990) Evolutionary character analysis: tracing characters on cladograms. Cladistics 6, 137–170.

    Google Scholar 

  • Miller, K.R., and Jacobs, J.S. (1989) On Prochlorothrix. Nature 338, 303–304.

    Google Scholar 

  • Mishler, B.D., Bremer, K., Humphries, C.J., and Churchill, S.P. (1988) The use of nucleic acid sequence data in phylogenetic reconstruction. Taxon 37, 391–395.

    Google Scholar 

  • Mishler, B.D., Thrall, P., Hopple, J.S., de Luna, E., and Vilgalys, R. (1990) The emperor’s new clothes? A molecular approach to the phylogeny of bryophytes using chloroplast DNA. Amer. J. Bot. 77, 146 (abstract).

    Google Scholar 

  • Miyamoto, M.M. (1983) Frogs of the Eleutherodactylus rugulosus group: a cladistic study of allozyme, morphological, and karyological data. Syst. Zool. 32, 109–124.

    Google Scholar 

  • Miyamoto, M.M. (1985) Consensus cladograms and general classifications. Cladistics 1, 186–189.

    Google Scholar 

  • Morden, C.W., and Golden, S.S. (1989a) psbA genes indicate common ancestry of prochlorophytes and chloroplasts. Nature 337, 382–385.

    PubMed  CAS  Google Scholar 

  • Morden, C.W., and Golden, S.S. (1989b) Corrigendum. Nature 339, 400.

    Google Scholar 

  • Olmstead, R.G. (1989) Phylogeny, phenotypic evolution, and biogeography of the Scutellaria angustifolia complex (Lamiaceae): inference from morphological and molecular data. Syst. Bot. 14, 320–338.

    Google Scholar 

  • Olmstead, R.G., Jansen, R.K., Michaels, H.J., Downie, S.R., and Palmer, J.D. (1990) Chloroplast DNA and phylogenetic studies in the Asteridae. In: Biological Approaches and Evolutionary Trends in Plants (ed. S. Kawano), Academic Press, San Diego, pp. 119–134.

    Google Scholar 

  • Palmer, J.D. (1985) Comparative organization of chloroplast genomes. Ann. Rev. Genet. 19, 325–354.

    PubMed  CAS  Google Scholar 

  • Palmer, J.D. (1987) Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation. Amer. Natur. 130, S6–S29.

    CAS  Google Scholar 

  • Palmer, J.D., Jansen, R.K., Michaels, H.J., Chase, M.W., and Manhart, J.R. (1988) Chloroplast DNA variation and plant phylogeny. Ann. Missouri Bot. Gard. 75, 1180–1206.

    Google Scholar 

  • Palmer, J.D., Osorio, B., Aldrich, J., and Thompson, W.F. (1987) Chloroplast DNA evolution among legumes: loss of a large inverted repeat occurred prior to other sequence rearrangements. Curr. Genet. 11, 275–286.

    CAS  Google Scholar 

  • Patterson, C. (1981) Significance of fossils in determining evolutionary relationships. Ann. Rev. Ecol. Syst. 12, 195–223.

    Google Scholar 

  • Patterson, C. (1982) Morphological characters and homology. In: Problems of Phylogenetic Reconstruction (eds. K.A. Joysey and A.E. Friday), Academic Press, London, pp. 21–74.

    Google Scholar 

  • Patterson, C. (1987) Introduction. In: Molecules and Morphology in Evolution: Conflict or Compromise? (ed. C. Patterson), Cambridge University Press, Cambridge, pp. 1–22.

    Google Scholar 

  • Patterson, C. (1988) Homology in classical and molecular biology. Mol. Biol. Evol. 5, 603–625.

    PubMed  CAS  Google Scholar 

  • Patterson, C. (1989) Phylogenetic relations of major groups: conclusions and prospects. In: The Hierarchy of Life (eds. B. Fernholm, K. Bremer, and H. Jornvall), Elsevier, Amsterdam, pp. 471–488.

    Google Scholar 

  • Pimentel, R.A., and Riggins, R. (1987) The nature of cladistic data. Cladistics 3, 201–209.

    Google Scholar 

  • Remane, A. (1952) Die Grundlagen des naturlichen Systems der vergleichenden Anatomie und der Phylogenetik, Geest and Portig, Leipzig.

    Google Scholar 

  • Riedl, R. (1978) Order in Living Organisms, Wiley, New York.

    Google Scholar 

  • Ritland, K., and Clegg, M.T. (1987) Evolutionary analysis of plant DNA sequences. Amer. Natur. 130, S74–S100.

    CAS  Google Scholar 

  • Sanderson, M.J. (1989) Confidence limits in phylogenies: the bootstrap revisited. Cladistics 5, 113–129.

    Google Scholar 

  • Sanderson, M.J., and Donoghue, M.J. (1989) Patterns of variation in levels of homoplasy. Evolution 43, 1781–1795.

    Google Scholar 

  • Scherer, S. (1990) The protein molecular clock: time for a reevaluation. Evol. Biol. 24, 83–106.

    CAS  Google Scholar 

  • Schlichting, C.D. (1986) The evolution of phenotypic plasticity in plants. Ann. Rev. Ecol. Syst. 17, 667–693.

    Google Scholar 

  • Sibley, C.G., and Ahlquist, J.E. (1987) Avian phylogeny reconstructed from comparisons of the genetic material, DNA. In: Molecules and Morphology in Evolution: Conflict or Compromise? (ed. C. Patterson), Cambridge University Press, Cambridge, pp. 95–121.

    Google Scholar 

  • Sidow, A., and Wilson, A.C. (1990) Compositional statistics: an improvement of evolutionary parsimony and its application to deep branches in the tree of life. J. Mol. Evol. 31, 51–68.

    PubMed  CAS  Google Scholar 

  • Smith, A.B. (1989) RNA sequence data in phylogenetic reconstruction: testing the limits of its resolution. Cladistics 5, 321–344.

    Google Scholar 

  • Sober, E. (1988) Reconstructing the Past: Parsimony, Evolution, and Inference, MIT Press, Cambridge, MA.

    Google Scholar 

  • Song, K.M., Osborne, T.C., and Williams, P.H. (1988) Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs). Theor. Appl. Genet. 75, 784–794.

    CAS  Google Scholar 

  • Stebbins, G.L. (1950) Variation and Evolution in Plants, Columbia University Press, New York.

    Google Scholar 

  • Steele, K.P., Holsinger, K.E., Jansen, R.K., and Taylor, D.W. (1988) Phylogenetic relationships in green plants—a comment on the use of 5S ribosomal RNA sequences by Bremer et al. Taxon 37, 135–138.

    Google Scholar 

  • Strauss, S.H., Palmer, J.D., Howe, G.T., and Doerksen, A.H. (1988) Chloroplast genomes of two conifers lack a large inverted repeat and are extensively rearranged. Proc. Natl. Acad. Sci. USA 85, 3898–3902.

    PubMed  CAS  Google Scholar 

  • Sultan, S.E. (1987) Evolutionary implications of phenotypic plasticity in plants. Evol. Biol. 21, 127–178.

    Google Scholar 

  • Sytsma, K.J. (1990) DNA and morphology: inference of plant phylogeny. Trends Ecol. Evol. 5, 104–110.

    Google Scholar 

  • Sytsma, K.J., and Gottlieb, L.D. (1986) Chloroplast DNA evidence for the origin of the genus Heterogaura from a species of Clarkia (Onagraceae). Proc. Natl. Acad. Sci. USA 83, 5554–5557.

    PubMed  CAS  Google Scholar 

  • Sytsma, K.J., and Smith, J.F. (1988) DNA and morphology: comparisons in Onagraceae. Ann. Missouri Bot. Gard. 75, 1217–1237.

    Google Scholar 

  • Sytsma, K.J., Smith, J.F., and Berry, P.E. (1991) Biogeography and evolution of morphology, breeding systems, flavonoids, and chloroplast DNA in the four Old World species of Fuchsia (Onagraceae). Syst. Bot. 16, 257–269.

    Google Scholar 

  • Sytsma, K.J., Smith, J.F., and Gottlieb, L.D. (1990) Phylogenetics in Clarkia (Onagraceae): restriction site mapping of chloroplast DNA. Syst. Bot. 15, 280–295.

    Google Scholar 

  • Syvanen, M., Hartman, H., and Stevens, P.F. (1989) Classical plant taxonomic ambiguities extend to the molecular level. J. Mol. Evol. 28, 536–544.

    PubMed  CAS  Google Scholar 

  • Templeton, A.R. (1983) Convergent evolution and nonparametric inferences from restriction data and DNA sequences. In: Statistical Analysis of DNA Sequence Data (ed. B.S. Weir), Marcel Dekker, New York, pp. 151–179.

    Google Scholar 

  • Turner, S., Burger-Wiersma, T., Giovannoni, S.J., Mur, L.R., and Pace, N.R. (1989) The relationship of a prochlorophyte Prochlorothrix hollandica to green chloroplasts. Nature 337, 380–382.

    PubMed  CAS  Google Scholar 

  • Wagner, G.P. (1989) The origin of morphological characters and the biological basis of homology. Evolution 43, 1157–1171.

    Google Scholar 

  • Wheeler, W.C. (1990) Combinatorial weights in phylogenetic analysis: a statistical parsimony procedure. Cladistics 6, 269–275.

    Google Scholar 

  • Wheeler, W.C. (1991) Extinction, sampling, and molecular phylogenetics. In: Extinction and Phylogeny (ed. M. Novacek), Columbia University Press, New York, in press.

    Google Scholar 

  • Wheeler, W.C, and Honeycutt, R.L. (1988) Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications. Mol. Biol. Evol. 5, 90–96.

    PubMed  CAS  Google Scholar 

  • Wilson, A.C., Zimmer, E.A., Prager, E.M., and Kocher, T.D. (1989) Restriction mapping in the molecular systematics of mammals: a retrospective salute. In: The Hierarchy of Life (eds. B. Fernholm, K. Bremer, and H. Jornvall), Elsevier, Amsterdam, pp. 407–419.

    Google Scholar 

  • Wolfe, K.H., Li, W.-H., and Sharp, P.M. (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. USA 84, 9054–9058.

    PubMed  CAS  Google Scholar 

  • Wolters, J., and Erdmann, V.A. (1986) Cladistic analysis of 5S rRNA and 16S rRNA secondary and primary structure—the evolution of eukaryotes and their relation to Archaebacteria. J. Mol. Evol. 24, 152–166.

    CAS  Google Scholar 

  • Wu, C.-I., and Li, W.-H. (1985) Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. USA 82, 1741–1745.

    PubMed  CAS  Google Scholar 

  • Wyss, A.R., Novacek, M.J., and McKenna, M.J. (1987) Amino acid sequence versus morphological data and the interordinal relationships of mammals. Mol. Biol. Evol. 4, 99–116.

    PubMed  CAS  Google Scholar 

  • Zimmer, E.A., Hamby, R.K., Arnold, M.L., LeBlanc, D.A., and Theriot, E.C. (1989) Ribosomal RNA phylogenies and flowering plant evolution. In: The Hierarchy of Life (eds. B. Fernholm, K. Bremer, and H. Jornvall), Elsevier, Amsterdam, pp. 205–214.

    Google Scholar 

  • Zurawski, G., Bottomley, W., and Whitfeld, P.R. (1984) Junctions of the large single copy region and the inverted repeats in Spinacia oleracea and Nicotiana debneyi chloroplast DNA: sequence of the genes for tRNAhis and the ribosomal proteins S19 and L2. Nucleic Acids Res. 12, 6547–6558.

    PubMed  CAS  Google Scholar 

  • Zurawski, G., and Clegg, M.T. (1987) Evolution of higher plant chloroplast-encoded genes: implications for structure-function and phylogenetic studies. Ann. Rev. Plant Physiol. 38, 391–418.

    CAS  Google Scholar 

Download references

Authors

Editor information

Pamela S. Soltis Douglas E. Soltis Jeff J. Doyle

Rights and permissions

Reprints and permissions

Copyright information

© 1992 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Donoghue, M.J., Sanderson, M.J. (1992). The Suitability of Molecular and Morphological Evidence in Reconstructing Plant Phylogeny. In: Soltis, P.S., Soltis, D.E., Doyle, J.J. (eds) Molecular Systematics of Plants. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-3276-7_15

Download citation

  • DOI: https://doi.org/10.1007/978-1-4615-3276-7_15

  • Publisher Name: Springer, Boston, MA

  • Print ISBN: 978-0-412-02241-8

  • Online ISBN: 978-1-4615-3276-7

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics