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How to Sequence and Assemble Plant Genomes

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Nanopore Sequencing

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2632))

Abstract

Although nanopore sequencer is a great tool, many plant scientists have suffered from bad sequencing results, even though they have exactly followed the official protocol in preparing a library. This is because the protocol is not optimized for plant genomic DNA. The protocol may be good for sequencing animal or bacterial genomes, but not for plants. However, if the protocol is properly modified, one can obtain lots of long reads and achieve a telomere-to-telomere assembly. Here I present a protocol to that end.

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Correspondence to Ken Naito .

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© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

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Naito, K. (2023). How to Sequence and Assemble Plant Genomes. In: Arakawa, K. (eds) Nanopore Sequencing. Methods in Molecular Biology, vol 2632. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2996-3_5

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  • DOI: https://doi.org/10.1007/978-1-0716-2996-3_5

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2995-6

  • Online ISBN: 978-1-0716-2996-3

  • eBook Packages: Springer Protocols

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