Abstract
Studying neurological diseases have long been hampered by the lack of physiologically relevant models to resemble the complex human brain and the associated pathologies. Three-dimensional brain organoids have emerged as cutting-edge technology providing an alternative in vitro model to study healthy neural development and function as well as pathogenesis of neurological disorders and neuropathologies induced by pathogens. Nonetheless, the absence of immune cells in current models poses a barrier to fully recapitulate brain microenvironment during the onset of HIV-1-associated neuropathogenesis. To address this and to further the brain organoid technology, we have incorporated HIV-target microglia into brain organoids, generating a complex multicellular interaction, which mimics the HIV-1-infected brain environment. Here we describe the method to generate a brain organoid consisting on neurons, astrocytes, and microglia (with and without HIV infection) that recapitulate the HIV-associated neuropathology. This model has tremendous potential to expand our knowledge on neuronal dysfunction associated with HIV-1 infection of glia.
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References
Wang H (2018) Modeling neurological diseases with human brain organoids. Front Synaptic Neurosci 10:15. https://doi.org/10.3389/fnsyn.2018.00015
Pasca SP (2018) The rise of three-dimensional human brain cultures. Nature 553(7689):437–445. https://doi.org/10.1038/nature25032
Lancaster MA, Knoblich JA (2014) Organogenesis in a dish: modeling development and disease using organoid technologies. Science 345(6194):1247125. https://doi.org/10.1126/science.1247125
Qian X, Nguyen HN, Jacob F, Song H, Ming GL (2017) Using brain organoids to understand Zika virus-induced microcephaly. Development 144(6):952–957. https://doi.org/10.1242/dev.140707
Qian X, Nguyen HN, Song MM, Hadiono C, Ogden SC, Hammack C, Yao B, Hamersky GR, Jacob F, Zhong C, Yoon KJ, Jeang W, Lin L, Li Y, Thakor J, Berg DA, Zhang C, Kang E, Chickering M, Nauen D, Ho CY, Wen Z, Christian KM, Shi PY, Maher BJ, Wu H, Jin P, Tang H, Song H, Ming GL (2016) Brain-region-specific organoids using mini-bioreactors for Modeling ZIKV Exposure. Cell 165(5):1238–1254. https://doi.org/10.1016/j.cell.2016.04.032
Dos Reis RS, Sant S, Keeney H, Wagner MCE, Ayyavoo V (2020) Modeling HIV-1 neuropathogenesis using three-dimensional human brain organoids (hBORGs) with HIV-1 infected microglia. Sci Rep 10(1):15209. https://doi.org/10.1038/s41598-020-72214-0
Cairns DM, Rouleau N, Parker RN, Walsh KG, Gehrke L, Kaplan DL (2020) A 3D human brain-like tissue model of herpes-induced Alzheimer’s disease. Sci Adv 6(19):eaay8828. https://doi.org/10.1126/sciadv.aay8828
Zhang B, He Y, Xu Y, Mo F, Mi T, Shen QS, Li C, Li Y, Liu J, Wu Y, Chen G, Zhu W, Qin C, Hu B, Zhou G (2018) Differential antiviral immunity to Japanese encephalitis virus in developing cortical organoids. Cell Death Dis 9(7):719. https://doi.org/10.1038/s41419-018-0763-y
Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Hollt T, Levi BP, Shehata SI, Aevermann B, Beller A, Bertagnolli D, Brouner K, Casper T, Cobbs C, Dalley R, Dee N, Ding SL, Ellenbogen RG, Fong O, Garren E, Goldy J, Gwinn RP, Hirschstein D, Keene CD, Keshk M, Ko AL, Lathia K, Mahfouz A, Maltzer Z, McGraw M, Nguyen TN, Nyhus J, Ojemann JG, Oldre A, Parry S, Reynolds S, Rimorin C, Shapovalova NV, Somasundaram S, Szafer A, Thomsen ER, Tieu M, Quon G, Scheuermann RH, Yuste R, Sunkin SM, Lelieveldt B, Feng D, Ng L, Bernard A, Hawrylycz M, Phillips JW, Tasic B, Zeng H, Jones AR, Koch C, Lein ES (2019) Conserved cell types with divergent features in human versus mouse cortex. Nature 573(7772):61–68. https://doi.org/10.1038/s41586-019-1506-7
Lancaster MA, Knoblich JA (2014) Generation of cerebral organoids from human pluripotent stem cells. Nat Protoc 9(10):2329–2340. https://doi.org/10.1038/nprot.2014.158
Bissel SJ, Wiley CA (2004) Human immunodeficiency virus infection of the brain: pitfalls in evaluating infected/affected cell populations. Brain Pathol 14(1):97–108. https://doi.org/10.1111/j.1750-3639.2004.tb00503.x
Resnick L, Berger JR, Shapshak P, Tourtellotte WW (1988) Early penetration of the blood-brain-barrier by HIV. Neurology 38(1):9–14. https://doi.org/10.1212/wnl.38.1.9
Chakrabarti L, Hurtrel M, Maire MA, Vazeux R, Dormont D, Montagnier L, Hurtrel B (1991) Early viral replication in the brain of SIV-infected rhesus monkeys. Am J Pathol 139(6):1273–1280
Zayyad Z, Spudich S (2015) Neuropathogenesis of HIV: from initial neuroinvasion to HIV-associated neurocognitive disorder (HAND). Curr HIV/AIDS Rep 12(1):16–24. https://doi.org/10.1007/s11904-014-0255-3
Rao VR, Ruiz AP, Prasad VR (2014) Viral and cellular factors underlying neuropathogenesis in HIV associated neurocognitive disorders (HAND). AIDS Res Ther 11:13. https://doi.org/10.1186/1742-6405-11-13
Everall IPHR, Marcotte TD, Ellis RJ, McCutchan JA, Atkinsin JH, Grant I, Mallory M, Masliah E (1999) Cortical synaptic density is reduced in mild to moderate human immunodeficiency virus neurocognitive disorder. Brain Pathol 9:9
Ellis R, Langford D, Masliah E (2007) HIV and antiretroviral therapy in the brain: neuronal injury and repair. Nat Rev Neurosci 8(1):33–44. https://doi.org/10.1038/nrn2040
Shou-Jiang G, Boshoff C, Jayachandra S, Weiss RA, Chang Y, Moore PS (1997) KSHV ORF K9 (vIRF) is an oncogene which inhibits the interferon signaling pathway. Oncogene 15:7
Guha D, Nagilla P, Redinger C, Srinivasan A, Schatten GP, Ayyavoo V (2012) Neuronal apoptosis by HIV-1 Vpr: contribution of proinflammatory molecular networks from infected target cells. J Neuroinflammation 9:138. https://doi.org/10.1186/1742-2094-9-138
Lu J, Delli-Bovi LC, Hecht J, Folkerth R, Sheen VL (2011) Generation of neural stem cells from discarded human fetal cortical tissue. J Vis Exp 51. https://doi.org/10.3791/2681
Montefiori DC (2009) Measuring HIV neutralization in a luciferase reporter gene assay. Methods Mol Biol 485:395–405. https://doi.org/10.1007/978-1-59745-170-3_26
Venkatachari NJ, Majumder B, Ayyavoo V (2007) Human immunodeficiency virus (HIV) type 1 Vpr induces differential regulation of T cell costimulatory molecules: direct effect of Vpr on T cell activation and immune function. Virology 358(2):347–356. https://doi.org/10.1016/j.virol.2006.08.030
Guo L, Rezvanian A, Kukreja L, Hoveydai R, Bigio EH, Mesulam MM, El Khoury J, Geula C (2016) Postmortem adult human microglia proliferate in culture to high passage and maintain their response to Amyloid-beta. J Alzheimers Dis 54(3):1157–1167. https://doi.org/10.3233/JAD-160394
Singh M, Close DA, Mukundan S, Johnston PA, Sant S (2015) Production of uniform 3D microtumors in hydrogel microwell arrays for measurement of viability, morphology, and signaling pathway activation. Assay Drug Dev Technol 13(9):570–583. https://doi.org/10.1089/adt.2015.662
Singh M, Mukundan S, Jaramillo M, Oesterreich S, Sant S (2016) Three-dimensional breast cancer models Mimic Hallmarks of size-induced tumor progression. Cancer Res 76(13):3732–3743. https://doi.org/10.1158/0008-5472.CAN-15-2304
Singh M, Warita K, Warita T, Faeder JR, Lee REC, Sant S, Oltvai ZN (2018) Shift from stochastic to spatially-ordered expression of serine-glycine synthesis enzymes in 3D microtumors. Sci Rep 8(1):9388. https://doi.org/10.1038/s41598-018-27266-8
Acknowledgments
We thank Dr. Gengiz Geula from the Laboratory for Cognitive and Molecular Morphometry at Nothwestern University for donating the adult brain primary microglia cells for our study. This work is partially supported by the NIH (R37CA232209) and the start-up funds from Department of Pharmaceutical Sciences, School of Pharmacy, University of Pittsburgh to Dr. Shilpa Sant.
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dos Reis, R.S., Sant, S., Ayyavoo, V. (2023). Three-Dimensional Human Brain Organoids to Model HIV-1 Neuropathogenesis. In: Aquino de Muro, M. (eds) Virus-Host Interactions. Methods in Molecular Biology, vol 2610. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2895-9_14
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DOI: https://doi.org/10.1007/978-1-0716-2895-9_14
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