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A Microfluidic/Microscopy-Based Platform for on-Chip Controlled Gene Expression in Mammalian Cells

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Synthetic Gene Circuits

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2229))

Abstract

Applications of control engineering to mammalian cell biology have been recently implemented for precise regulation of gene expression. In this chapter, we report the main experimental and computational methodologies to implement automatic feedback control of gene expression in mammalian cells using a microfluidics/microscopy platform.

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References

  1. Fracassi C, Postiglione L, Fiore G, di Bernardo D (2016) Automatic control of gene expression in mammalian cells. ACS Synth Biol 5(4):296–302. https://doi.org/10.1021/acssynbio.5b00141

    Article  CAS  PubMed  Google Scholar 

  2. Postiglione L, Napolitano S, Pedone E, Rocca DL, Aulicino F, Santorelli M, Tumaini B, Marucci L, di Bernardo D (2018) Regulation of gene expression and signaling pathway activity in mammalian cells by automated microfluidics feedback control. ACS Synth Biol 7(11):2558–2565. https://doi.org/10.1021/acssynbio.8b00235

    Article  CAS  PubMed  Google Scholar 

  3. Pedone E, Postiglione L, Aulicino F, Rocca DL, Montes-Olivas S, Khazim M, di Bernardo D, Pia Cosma M, Marucci L (2019) A tunable dual-input system for on-demand dynamic gene expression regulation. Nat Commun 10(1):4481. https://doi.org/10.1038/s41467-019-12329-9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Kolnik M, Tsimring LS, Hasty J (2012) Vacuum-assisted cell loading enables shear-free mammalian microfluidic culture. Lab Chip 12(22):4732–4737. https://doi.org/10.1039/c2lc40569e

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Astrom KJ, Murray RM (2010) Feedback systems: an introduction for scientists and engineers. Princeton University Press

    Google Scholar 

  6. Utnik V, Lee, H (2006) Chattering problem in sliding mode control systems. Paper presented at the international workshop on variable structure systems, Alghero, Sardinia, Italy

    Google Scholar 

  7. Morari M, Lee JH (1999) Model predictive control: past, present and future. Comput Chem Eng 23(4):667–682. https://doi.org/10.1016/S0098-1354(98)00301-9

    Article  CAS  Google Scholar 

  8. Fiore G, Menolascina F, di Bernardo M, di Bernardo D (2013) An experimental approach to identify dynamical models of transcriptional regulation in living cells. Chaos 23(2):025106. https://doi.org/10.1063/1.4808247

    Article  CAS  PubMed  Google Scholar 

  9. Menolascina F, Fiore G, Orabona E, De Stefano L, Ferry M, Hasty J, di Bernardo M, di Bernardo D (2014) In-vivo real-time control of protein expression from endogenous and synthetic gene networks. PLoS Comput Biol 10(5):e1003625–e1003625. https://doi.org/10.1371/journal.pcbi.1003625

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgments

This work was funded by Medical Research Council grant MR/N021444/1 to L.M., by the Engineering and Physical Sciences Research Council grants EP/R041695/1 and EP/S01876X/1 to L.M., and by BrisSynBio, a BBSRC/EPSRC Synthetic Biology Research Centre (BB/L01386X/1) to L.M.

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Correspondence to Lucia Marucci .

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Khazim, M., Pedone, E., Postiglione, L., di Bernardo, D., Marucci, L. (2021). A Microfluidic/Microscopy-Based Platform for on-Chip Controlled Gene Expression in Mammalian Cells. In: Menolascina, F. (eds) Synthetic Gene Circuits . Methods in Molecular Biology, vol 2229. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1032-9_10

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  • DOI: https://doi.org/10.1007/978-1-0716-1032-9_10

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1031-2

  • Online ISBN: 978-1-0716-1032-9

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