Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Bautz FA, Bautz EK (1967) Transformation in phage T4: minimal recognition length between donor and recipient DNA. Genetics 57:887–895
Belfort M, Derbyshire V, Cousineau B, Lambowitz A (2002) Mobile introns: pathways and proteins. In: Craig N, Craigie R, Gellert M, Lambowitz A (eds) Mobile DNA II. ASM Press, Washington, DC, pp 761–783
Bell-Pedersen D, Quirk SM, Aubrey M, Belfort M (1989) A site-specific endonuclease and co-conversion of flanking exons associated with the mobile td intron of phage T4. Gene 82:119–126
Belle A, Landthaler M, Shub DA (2002) Intronless homing: site-specific endonuclease SegF of bacteriophage T4 mediates localized marker exclusion analogous to homing endonucleases of group I introns. Genes Dev 16:351–362
Carlson K, Kosturko L. D (1998) Endonuclease II of coliphage T4: a recombinase disguised as a restriction endonuclease? Mol Microbiol 27:671–676
Carlson K, Wiberg JS (1983) In vivo cleavage of cytosine-containing bacteriophage T4 DNA to genetically distinct, discretely sized fragments. J Virol 48:18–30
Chevalier BS, Stoddard BL (2001) Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res 29:3757–3774
Dalgaard JZ, Moser MJ, Hughey R, Mian IS (1997) Statistical modeling, phylogenetic analysis and structure prediction of a protein splicing domain common to inteins and hedgehog proteins. J Comput Biol 4:193–214
Doolittle WF, Sapienza C (1980) Selfish genes, the phenotype paradigm and genome evolution. Nature 284:601–603
Eddy SR (1992) Introns in the T-even bacteriophages. University of Colorado, Boulder
Edgell DR (2002) Selfish DNA: new abode for homing endonucleases. Curr Biol 12:R276–R278
Edgell DR, Shub DA (2001) Related homing endonucleases I-BmoI and I-TevI use different strategies to cleave homologous recognition sites. Proc Natl Acad Sci USA 98:7898–7903
Edgell DR, Belfort M, Shub DA (2000) Barriers to intron promiscuity in bacteria. J Bacteriol 182:5281–5289
Edgell DR, Stanger MJ, Belfort M (2003) Importance of a single base pair for discrimination between intron-containing and intronless alleles by endonuclease I-BmoI. Curr Biol 13:973–978
Goddard MR, Burt A (1999) Recurrent invasion and extinction of a selfish gene. Proc Natl Acad Sci USA 96:13880–13885
Gogarten JP, Senejani AG, Zhaxybayeva O, Olendzenski L, Hilario E (2002) Inteins: structure, function, and evolution. Annu Rev Microbiol 56:263–287
Gorbalenya AE (1994) Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new family. Protein Sci 3:1117–1120
Huang YJ, Parker MM, Belfort M (1999) Role of exonucleolytic degradation in group I intron homing in phage T4. Genetics 153:1501–1512
Jurica MS, Stoddard BL (1999) Homing endonucleases: structure, function and evolution. Cell Mol Life Sci 55:1304–1326
Kadyrov FA, Shlyapnikov MG, Kryukov VM (1997) A phage T4 site specific endonuclease, SegE, is responsible for a non-reciprocal genetic exchange between T-even-related phages. FEBS Lett 415:75–80
Kowalski JC, Belfort M, Stapleton MA, Holpert M, Dansereau JT, Pietrokovski S, Baxter SM, Derbyshire V (1999) Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: coincidence of computational and molecular findings. Nucleic Acids Res 27:2115–2125
Kutter E, Gachechiladze K, Poglazov A, Marusich E, Shneider M, Aronsson P, Napuli A, Porter D, Mesyanzhinov V (1995) Evolution of T4-related phages. Virus Genes 11:285–97
Liu Q, Belle A, Shub DA, Belfort M, Edgell DR (2003) SegG endonuclease promotes marker exclusion and mediates co-conversion from a distant cleavage site. J Mol Biol 334:13–23
Loayza D, Carpousis AJ, Krisch HM (1991) Gene 32 transcription and mRNA processing in T4-related bacteriophages. Mol Microbiol 5:715–725
Loizos N, Silva GH, Belfort M (1996) Intron-encoded endonuclease I-TevII binds across the minor groove and induces two distinct conformational changes in its DNA substrate. J Mol Biol 255:412–424
Maté MJ, Kleanthous C (2004) Structure-based analysis of the metal-dependent mechanism of H-N-H endonucleases. J Biol Chem 279:34763–34769
Miller ES, Kutter E, Mosig G, Arisaka F, Kunisawa T, Ruger W (2003) Bacteriophage T4 genome. Microbiol Mol Biol Rev 67:86–156
Parker MM, Belisle M, Belfort M (1999) Intron homing with limited exon homology. Illegitimate double-strand-break repair in intron acquisition by phage T4. Genetics 153:1513–1523
Pees E, de Groot B (1970) Partial exclusion of genes of bacteriophage T2 with T4-glucosylated DNA in crosses with bacteriophage T4. Genetica 41:541–550
Pietrokovski S (2001) Intein spread and extinction in evolution. Trends Genet 17:465–472
Pommer AJ, Cal S, Keeble AH, Walker D, Evans SJ, Kuhlmann UC, Cooper A, Connolly BA, Hemmings AM, Moore GR, James R, Kleanthous C (2001) Mechanism and cleavage specificity of the H-N-H endonuclease colicin E9. J Mol Biol 314:735–749
Quirk SM, Bell-Pedersen D, Belfort M (1989a) Intron mobility in the T-even phages: high frequency inheritance of group I introns promoted by intron open reading frames. Cell 56:455–465
Quirk SM, Bell-Pedersen D, Tomaschewski J, Ruger W, Belfort M (1989b) The inconsistent distribution of introns in the T-even phages indicates recent genetic exchanges. Nucleic Acids Res 17:301–315
Ray U, Bartenstein L, Drake JW (1972) Inactivation of bacteriophage T4 by ethyl methanesulfonate: influence of host and viral genotypes. J Virol 9:440–447
Repoila F, Tetart F, Bouet JY, Krisch HM (1994) Genomic polymorphism in the T-even bacteriophages. EMBO J 13:4181–4192
Russell RL, Huskey RJ (1974) Partial exclusion between T-even bacteriophages: an incipient genetic isolation mechanism. Genetics 78:989–1014
Sancar A (1996) DNA excision repair. Annu Rev Biochem 65:43–81
Sandegren L, Sjoberg BM (2004) Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages: evidence for recent transfer of old introns. J Biol Chem 279:22218–22227
Sharma M, Ellis RL, Hinton DM (1992) Identification of a family of bacteriophage T4 genes encoding proteins similar to those present in group I introns of fungi and phage. Proc Natl Acad Sci USA 89:6658–6662
Shen BW, Landthaler M, Shub DA, Stoddard BL (2004) DNA binding and cleavage by the HNH homing endonuclease I-HmuI. J Mol Biol 342:43–56
Shub DA, Goodrich-Blair H, Eddy SR (1994) Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns. Trends Biochem Sci 19:402–404
Singer BS, Gold L, Gauss P, Doherty DH (1982) Determination of the amount of homology required for recombination in bacteriophage T4. Cell 31:25–33
Sitbon E, Pietrokovski S (2003) New types of conserved sequence domains in DNA-binding regions of homing endonucleases. Trends Biochem Sci 28:473–477
Truglio JJ, Rhau B, Croteau DL, Wang L, Skorvaga M, Karakas E, Della Vecchia MJ, Wang H, VanHouten B, Kisker C (2005) Structural insights into the first incision reaction during nucleotide excision repair. EMBO J 24:885–894.
Verhoeven EE, van Kesteren M, Moolenaar GF, Visse R, Goosen N (2000) Catalytic sites for 3′ and 5′ incision of Escherichia coli nucleotide excision repair are both located in UvrC. J Biol Chem 275:5120–5123
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2005 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Edgell, D.R. (2005). Free-Standing Homing Endonucleases of T-even Phage: Freeloaders or Functionaries?. In: Belfort, M., Wood, D.W., Stoddard, B.L., Derbyshire, V. (eds) Homing Endonucleases and Inteins. Nucleic Acids and Molecular Biology, vol 16. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-29474-0_9
Download citation
DOI: https://doi.org/10.1007/3-540-29474-0_9
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-25106-4
Online ISBN: 978-3-540-29474-0
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)