Skip to main content

Organization of Photosynthesis Gene Transcripts

  • Chapter
Anoxygenic Photosynthetic Bacteria

Part of the book series: Advances in Photosynthesis and Respiration ((AIPH,volume 2))

Summary

Clusters of genes that encode pigment biosynthesis and pigment-binding proteins have been found in several species of anoxygenic photosynthetic bacteria. Transcripts in excess of ten kilobases in length have been found to encode what were previously thought to be separate operons with independent promoters in Rhodobacter capsulatus. This transcriptional organization of operons is called a superoperon, and is important for efficient transition in metabolism when cells are shifted from aerobic respiratory to anaerobic photosynthetic growth conditions. Since some key features of superoperons are present in other species of photosynthetic bacteria, the clustering of photosynthesis genes may have been evolutionarily conserved because of advantages accrued to cells that have linked transcription units into superoperons. The evidence for the types of transcription units in several species of anoxygenic photosynthetic bacteria is summarized and compared, with an emphasis on unifying patterns of transcript organization. Because much of the data are not conclusive, some of the conclusions are somewhat speculative in nature. Since more is known about transcripts of Rb. capsulatus, it is used as a model for the other species. The reader is advised to consult recent reviews of related areas (Wellington et al., 1992; Klug, 1993).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Adams CW, Forrest ME Cohen SN and Beatty JT (1989) Structural and functional analysis of transcriptional control of the Rhodobacter capsulatus puf operon. J Bacteriol 171: 473–482

    CAS  PubMed  Google Scholar 

  • Armstrong GA, Alberti M, Leach F and Hearst JE (1989) Nucleotide sequence, organization, and nature of the protein products of the carotenoid biosynthesis gene cluster of Rhodobacter capsulatus. Mol Gen Genet 216: 254–268

    Article  CAS  PubMed  Google Scholar 

  • Bauer CE, Buggy J, Yang Z and Marrs BL (1991) The superoperonal organization of genes for pigment biosynthesis and reaction center proteins is a conserved feature in Rb. capsulatus: analysis of overlapping bchB and puhA transcripts. Mol Gen Genet 228: 438–444

    Article  Google Scholar 

  • Bauer CE, Bollivar DW and Suzuki JY (1993) Genetic analyses of photopigment biosynthesis in eubacteria: a guiding light for algae and plants. J Bacteriol 175: 3919–3925

    CAS  PubMed  Google Scholar 

  • Bélanger G and Gingras G (1988) Structure and expression of the puf operon messenger RNA in Rhodospirillum rubrum. J Biol Chem 263: 7639–7645

    PubMed  Google Scholar 

  • Belasco JG, Beatty JT, Adams CW, von Gabain A and Cohen SN (1985) Differential expression of photosynthesis genes in Rb. capsulatus results from segmental differences in stability within the polycistronic rxcA transcript. Cell 40: 171–181

    Article  CAS  PubMed  Google Scholar 

  • Bérard J, Bélanger G and Gingras G (1989) Mapping of the puh messenger RNAs from Rhodospirillum rubrum. J Biol Chem 264: 10897–10903

    PubMed  Google Scholar 

  • Bollivar DW, Suzuki JY, Beatty JT, Dobrowlski J and Bauer CE (1994a) Directed mutational analysis of bacteriochlorophyll a biosynthesis in Rhodobacter capsulatus. J Mol Biol 237: 622–640

    Article  CAS  PubMed  Google Scholar 

  • Bollivar DW, Wang S, Allen JP and Bauer CE (1994b) Molecular genetic analysis of terminal steps in bacteriochlorophyll a biosynthesis: Characterization of a Rhodobacter capsulatus strain that synthesizes geranylgeraniol esterified bacterio-chlorophyll a. Biochemistry 33: 12763–12768

    Article  CAS  PubMed  Google Scholar 

  • Burke DH, Alberti M and Hearst JE (1993) The Rhodobacter capsulatus chlorin reductase-encoding locus, bchA consists of three genes bchX, bchY and bchZ. J Bacteriol 175: 2407–2413

    CAS  PubMed  Google Scholar 

  • Buttner M, Xie DL, Nelson H, Pinther W, Hauska G and Nelson N (1992) Photosynthetic reaction center genes in green sulfur bacteria and in photosystem 1 are related. Proc Natl Acad Sci USA 89: 8135–8139

    CAS  PubMed  Google Scholar 

  • Chen C-YA, Beatty JT, Cohen SN and Belasco JG (1988) An intercistronic stem-loop structure functions as an mRNA decay terminator necessary but insufficient for puf mRNA stability. Cell 52: 609–619

    Article  CAS  PubMed  Google Scholar 

  • Clark WG, Davidson E and Marrs BL (1984) Variation of levels of mRNA coding for antenna and reaction center polypeptides in Rhodopseudomonas capsulata in response to changes in oxygen concentration. J Bacteriol 157: 945–948

    CAS  PubMed  Google Scholar 

  • Coomber SA, Chaudhri M, Connor A, Britton G and Hunter CN (1990) Localized transposon Tn5 mutagenesis of the photosynthetic gene cluster of Rhodobacter sphaeroides. Mol Microbiol 4: 977–989

    CAS  PubMed  Google Scholar 

  • Donohue TJ, Hoger JH and Kaplan S (1986) Cloning and expression of the Rhodobacter sphaeroides reaction center H gene. J Bacteriol 168: 953–961

    CAS  PubMed  Google Scholar 

  • Gibson LCD, McGlynn P, Chaudhri M and Hunter CN (1992) A putative coproporphyrinogen III oxidase in Rhodobacter sphaeroides. II. Analysis of a region of the genome encoding hemF and the puc operon. Mol Microbiol 6: 3171–3186

    CAS  PubMed  Google Scholar 

  • Giuliano G, Pollock D, Stapp H and Scolnik PA (1988) A genetic-physical map of the Rhodobacter capsulatus carotenoid biosynthesis gene cluster. Mol Gen Genet 213: 78–83

    Article  CAS  Google Scholar 

  • Gong L, Lee JK and Kaplan S (1994) The Q geneof Rhodobacter sphaeroides: Its role in puf operon expression and spectral complex assembly. J Bacteriol 176: 2946–2961

    CAS  PubMed  Google Scholar 

  • Hunter CN, McGlynn P, Ashby MK, Burgess J G and Olsen JD (1991) DNA sequencing and complementation/deletion analysis of the bchA-puf operon region of Rhodobacter sphaeroides: in vivo mapping of the oxygen-regulated promoter. Mol Microbiol 5: 2649–2661

    CAS  PubMed  Google Scholar 

  • Kiley PJ and Kaplan S (1988) Molecular genetics of photosynthetic membrane biosynthesis in Rhodobacter sphaeroides. Microbiol Rev 52(1): 50–69

    CAS  PubMed  Google Scholar 

  • Klug G (1993) The role of mRNA degradation in the regulated expression of bacterial photosynthesis genes. Mol Microbiol 9: 1–7

    CAS  PubMed  Google Scholar 

  • Lang FS and Oesterhelt D (1989) Gene transfer system for Rhodopseudomonas viridis. J Bacteriol 171: 4425–4435

    CAS  PubMed  Google Scholar 

  • Lang, HP, Cogdell RJ, Gardiner AT and Hunter CN (1994) Early steps in carotenoid biosynthesis: sequences and transcriptional analysis of the crtI and crtB genes of Rhodobacter sphaeroides and overexpression and reactivation of crtI in Escherichia coli and R. sphaeroides. J Bacteriol 176: 3859–3869

    CAS  PubMed  Google Scholar 

  • LeBlanc HN and Beatty JT (1993) Rhodobacter capsulatus puc operon: promoter location, transcript sizes and effects of deletions on photosynthetic growth. J Gen Microbiol 139: 101–109

    Google Scholar 

  • Lee IY and Collins MLP (1993) Identification and partial sequence of the bchA gene of Rhodospirillum rubrum. Curr Microbiol 27: 85–90

    Article  CAS  PubMed  Google Scholar 

  • Lee JK, Kiley PJ and Kaplan S (1989) Posttranscriptional control of puc operon expression of B800-850 light-harvesting complex formation in Rhodobacter sphaeroides. J Bacteriol 171: 3391–3405

    CAS  PubMed  Google Scholar 

  • Lee JK and Kaplan S (1992) cis-acting regulatory elements invovled in oxygen and light control of puc operon transcription in Rhodobacter sphaeroides. J Bacteriol 174: 1146–1157

    CAS  PubMed  Google Scholar 

  • Liebetanz R, Hornberger U and Drews G (1991) Organization of the genes coding for the reaction-centre L and M subunits and B870 antenna polypeptides a and b from the aerobic photosynthetic bacterium Erythrobacter species OCH114. Mol Microbiol 5: 1459–1468

    CAS  PubMed  Google Scholar 

  • Ma D, Cook DN, O—Brien DA and Hearst JE (1993) Analysis of the promoter and regulatory sequences of an oxygen regulated bch operon in Rhodobacter capsulatus by site-directed mutagenesis. J Bacteriol 175: 2037–2045

    CAS  PubMed  Google Scholar 

  • McGlynn P and Hunter CN (1993) Genetic analysis of the bchC and bchA genes of Rhodobacter sphaeroides. Mol Gen Genet 236: 227–234

    Article  CAS  PubMed  Google Scholar 

  • Michel H, Weyer KA, Gruenberg H and Lottspeich F (1985) The ‘heavy’ subunit of the photosynthetic reaction centre from Rhodopseudomonas viridis: isolation of the gene, nucleotide and amino acid sequence. EMBO J 4: 1667–1672

    CAS  PubMed  Google Scholar 

  • Nagashima KVP, Shimada K and Matsuura K (1993) Primary structure and transcription of genes encoding B870 and photosynthetic reaction center apoproteins from Rubrivivax gelatinosus. J Biol Chem 269: 2477–2484

    Google Scholar 

  • Oberlé B, Tichy HV and Drews G (1990) Regulation of formation of photosynthetic light-harvesting complexes in Rhodobacter capsulatus. In: Drews G and Dawes EA (eds) Molecular Biology of Membrane-Bound Complexes in Phototrophic Bacteria, pp 77–84. Plenum Press, New York

    Google Scholar 

  • Prentki P and Krisch HM (1984) In vitro insertional mutagenesis with a selectable DNA fragment. Gene 29: 303–313

    Article  CAS  PubMed  Google Scholar 

  • Sägesser R (1992) Identifikation und charakterisierung des photosynthese-genclusters von Rhodospirillum rubrum. Ph.D. thesis, Universität Zürich

    Google Scholar 

  • Shiozawa JA, Csiszár K and Feick R (1990) Preliminary studies on the operon coding for the reaction center polypeptides in Chloroflexus aurantiacus. In: Drews G and Dawes EA (eds) Molecular Biology of Membrane-Bound Complexes in Phototrophic Bacteria, pp 11–18. Plenum Press, New York

    Google Scholar 

  • Taylor DP, Cohen SN, Clark WG and Marrs BL (1983) Alignment of genetic and restriction maps of the photosynthesis region of the Rhodopseudomonas capsulata chromosome by a conjugation-mediated marker rescue technique. J Bacteriol 154: 580–590

    CAS  PubMed  Google Scholar 

  • Tichy HV, Oberlé B, Stiehle H, Schiltz E and Drews G (1989) Genes downstream from pucB and pucA are essential for formation of the B800-850 complex of Rhodobacter capsulatus. J Bacteriol 171: 4914–4922

    CAS  PubMed  Google Scholar 

  • Tichy HV, Albien KU, Gadon N and Drews G (1991) Analysis of the Rhodobacter capsulatus puc operon—the pucC gene plays a central role in the regulation of LHII (B800-850 complex) expression. EMBO J 10: 2949–2955

    CAS  PubMed  Google Scholar 

  • Watanabe Y, Feick RG and Shiozawa JA (1992) Cloning and sequencing of the genes encoding the polypeptides of the B806-866 light-harvesting complex of Chloroflexus aurantiacus. In: Murata M (ed) Research in Photosynthesis. Vol I, pp 41–44. Kluwer Academic Publishers, Dordrecht

    Google Scholar 

  • Wellington CL and Beatty JT (1989) Promoter mapping and nucleotide sequence of the bchC bacteriochlorophyll biosynthesis gene from Rhodobacter capsulatus. Gene 83: 251–261

    Article  CAS  PubMed  Google Scholar 

  • Wellington CL and Beatty JT (1991) Overlapping mRNA transcripts of photosynthesis gene operons in Rhodobacter capsulatus. J Bacteriol 173(4): 1432–1443

    CAS  PubMed  Google Scholar 

  • Wellington CL, Taggart AKP and Beatty JT (1991) Functional significance of overlapping transcripts of crtEF, bchCA, and puf photosynthesis gene operons in Rhodobacter capsulatus. J Bacteriol 173: 2954–2961

    CAS  PubMed  Google Scholar 

  • Wellington CL, Bauer CE and Beatty JT (1992) Photosynthesis gene superoperons in purple nonsulfur bacteria: the tip of the iceberg? Can J Microbiol 38: 20–27

    CAS  Google Scholar 

  • Wiessner C (1990) Molekularbiologische analyse der gene des photosynthetischen apparates von Rhodopseudomonas viridis. Ph.D. thesis, Wolfgang Goethe-Universität, Fankfurt

    Google Scholar 

  • Wiessner C, Dunger I and Michel H (1990) Structure and transcription of the genes encoding the B1015 light-harvesting complex β and α subunits and the photosynthetic reaction center L, M, and cytochrome c subunits from Rhodopseudomonas viridis. J Bacteriol 172: 2877–2887

    CAS  PubMed  Google Scholar 

  • Woese CR (1987) Bacterial evolution. Microbiol Rev 51(2): 221–271

    CAS  PubMed  Google Scholar 

  • Yen HC and Marrs B (1976) Map of genes for carotenoid and bacteriochlorophyll biosynthesis in Rhodopseudomonas capsulata. J Bacteriol 126: 619–629

    CAS  PubMed  Google Scholar 

  • Yildiz FH, Gest H and Bauer CE (1992) Conservation of the photosynthesis gene cluster in Rhodospirillum centenum. Mol Microbiol 6: 2683–2691

    CAS  PubMed  Google Scholar 

  • Young DA, Bauer CE, Williams JC and Marrs BL (1989) Genetic evidence for superoperonal organization of genes for photosynthetic pigments and pigment-binding proteins in Rhodobacter capsulatus. Mol Gen Genet 218: 1–12

    Article  CAS  PubMed  Google Scholar 

  • Young DY, Rudzik MB and Marrs BL (1992) An overlap between operons involved in carotenoid and bacteriochlorophyll biosynthesis in Rhodobacter capsulatus. FEMS Microbiol Lett 95: 213–218

    Article  CAS  Google Scholar 

  • Youvan DC, Bylina EJ, Alberti M, Begusch H and Hearst JE (1984) Nucleotide and deduced polypeptide sequences of the photosynthetic reaction-center, B870 antenna and flanking polypeptides from Rb. capsulata. Cell 37: 949–957

    Article  CAS  PubMed  Google Scholar 

  • Zhu YS, Cook DN, Leach F, Armstrong GA, Alberti M and Hearst JE (1986) Oxygen-regulated mRNAs for light-harvesting and reaction center complexes and for bacterio-chlorophyll and carotenoid biosynthesis in Rhodobacter capsulatus during the shift from anaerobic to aerobic growth. J Bacteriol 168: 1180–1188

    CAS  PubMed  Google Scholar 

  • Zhu YS, Kiley PJ, Donohue TJ and Kaplan S (1986) Origin of the mRNA stoichiometry of the puf operon in Rhodobacter sphaeroides. J Biol Chem 261: 10366–10374

    CAS  PubMed  Google Scholar 

  • Zsebo KM and Hearst JE (1984) Genetic physical mapping of a photosynthetic gene cluster from R. capsulata. Cell 37: 937–947

    Article  CAS  PubMed  Google Scholar 

  • Zucconi AP and Beatty JT (1988) Posttranscriptional regulation by light of the steady-state levels of mature B800-850 light-harvesting complexes in Rhodobacter capsulatus. J Bacteriol 170: 877–882

    CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1995 Kluwer Academic Publishers

About this chapter

Cite this chapter

Beatty, J.T. (1995). Organization of Photosynthesis Gene Transcripts. In: Blankenship, R.E., Madigan, M.T., Bauer, C.E. (eds) Anoxygenic Photosynthetic Bacteria. Advances in Photosynthesis and Respiration, vol 2. Springer, Dordrecht. https://doi.org/10.1007/0-306-47954-0_57

Download citation

  • DOI: https://doi.org/10.1007/0-306-47954-0_57

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-0-7923-3681-5

  • Online ISBN: 978-0-306-47954-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics