Skip to main content

Transposon-Mediated Sequencing

  • Protocol

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 255))

Abstract

Transposon-mediated sequencing is an effective method for obtaining full-length high-quality DNA sequence. This method can be applied to the finishing stages of bacterial artificial chromosome (BAC) sequencing, allowing the user to expand a finishing repertoire of custom oligonucleotide sequencing, alternative chemistry sequencing, polymerase chain reaction (PCR), as well as other standard tools for acquiring high-quality data in low-coverage or low-quality regions. In addition to BAC subclones, transposon-mediated sequencing can be applied to cDNA or PCR products subcloned into vectors.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Hartwell, L., Lewis, R., et al. (2000) Genetics: From Genes to Genomes. McGraw-Hill, Boston.

    Google Scholar 

  2. Goryshin, I. Y. and Reznikoff, W. S. (1998) Tn5 in vitro transposition. J. Biol. Chem. 273, 7367–7374.

    Article  PubMed  CAS  Google Scholar 

  3. Jendrisak, J., Meis, R., et al. (1998) High efficiency in vitro transposition for DNA sequencing projects, in Proceedings of the 10th International Genome Sequencing and Analysis Conference. Miami Beach, FL.

    Google Scholar 

  4. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  5. Roach, J. C, Boysen, C, et al. (1995) Pairwise end sequencing: a unified approach to genomic mapping and sequencing. Genomics 26, 345–353.

    Article  PubMed  CAS  Google Scholar 

  6. Huang, X. and Madan, A. (1999) CAP3: a DNA sequence assembly program. Genome Res. 9, 868–877.

    Article  PubMed  CAS  Google Scholar 

  7. Rowen, L., Lasky, S., and Hood, L. (1999) Deciphering genomes through automated large-scale sequencing. Methods Microbiol. 28, 155–191.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2004 Humana Press Inc., Totowa, NJ

About this protocol

Cite this protocol

Reeg, R., Madan, A. (2004). Transposon-Mediated Sequencing. In: Zhao, S., Stodolsky, M. (eds) Bacterial Artificial Chromosomes. Methods in Molecular Biology™, vol 255. Humana Press. https://doi.org/10.1385/1-59259-752-1:197

Download citation

  • DOI: https://doi.org/10.1385/1-59259-752-1:197

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-988-9

  • Online ISBN: 978-1-59259-752-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics