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An update and perspectives on the use of promoters in plant genetic engineering

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Abstract

Genetically engineered plants have varied applications in agriculture for enhancing the values of food and feed. Genetic engineering aims to introduce selected genetic regions with desirable traits into target plants for both spatial and temporal expressions. Promoters are the key elements responsible for regulating gene expressions by modulating the transcription factors (TFs) through recognition of RNA polymerases. Based on their recognition and expression, RNA polymerases were categorized into RNA pol II and pol III promoters. Promoter activity and specificity are the two prime parameters in regulating the transgene expression. Since the use of constitutive promoters like Cauliflower mosaic virus (CaMV) 35S may lead to adverse effects on non-target organisms or ecosystem, inducible/tissue specific promoters and/or the RNA pol III promoters provide myriad opportunities for gene expressions with controlled regulation and with minimum adverse effects. Besides their role in transgene expression, their influence in synthetic biology and genome editing are also discussed. This review provides an update on the importance, current prospects, and insight into the advantages and disadvantages of promoters reported thus far would help to utilize them in the endeavour to develop nutritionally and agronomically improved transgenic crops for commercialization.

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References

  • Acharya S, Ranjan R, Pattanaik S, Maiti IB and Dey N 2014 Efficient chimeric plant promoters derived from plant infecting viral promoter sequences. Planta 239 381–396

    CAS  PubMed  Google Scholar 

  • Agarwal P, Kumar R, Pareek A and Sharma AK 2017 Fruit preferential activity of the tomato RIP1 gene promoter in transgenic tomato and Arabidopsis. Mol. Genet. Genom. 292 145–156

    CAS  Google Scholar 

  • Ali Z, Abulfaraj A, Idris A, Ali S, Tashkandi M and Mahfouz MM 2015 CRISPR/Cas9-mediated viral interference in plants. Genome Biol. 16 238

    PubMed  PubMed Central  Google Scholar 

  • Althoff F, Kopischke S, Zobell O, Ide K, Ishizaki K, Kohchi T and Zachgo S 2014 Comparison of the MpEF1alpha and CaMV35 promoters for application in Marchantia polymorpha overexpression studies. Transgenic Res. 23 235–244

    CAS  PubMed  Google Scholar 

  • An YQ, McDowell JM, Huang S, McKinney EC, Chambliss S and Meagher RB 1996 Strong, constitutive expression of the Arabidopsis ACT2/ACT8 actin subclass in vegetative tissues. Plant J. 10 107–121

    CAS  PubMed  Google Scholar 

  • Annadana S, Beekwilder MJ, Kuipers G, Visser PB, Outchkourov N, Pereira A, Udayakumar M, De Jong J and Jongsma MA 2002 Cloning of the chrysanthemum UEP1 promoter and comparative expression in florets and leaves of Dendranthema grandiflora. Transgenic Res. 11 437–445

    CAS  PubMed  Google Scholar 

  • Araceli OA, Alfredo CR, Javier MM and Luis HE 2017 A phosphate starvation‐driven bidirectional promoter as a potential tool for crop improvement and in vitro plant biotechnology. Plant Biotechnol. J. 15 558–567

    CAS  PubMed  Google Scholar 

  • Arango J, Salazar B, Welsch R, Sarmiento F, Beyer P and Al-Babili S 2010 Putative storage root specific promoters from cassava and yam: cloning and evaluation in transgenic carrots as a model system. Plant Cell Rep. 29 651–659

    CAS  PubMed  Google Scholar 

  • Atkinson RG, Bolitho KM, Wright MA, Iturriagagoitia-Bueno T, Reid SJ and Ross GS 1998 Apple ACC-oxidase and polygalacturonase:ripening-specific gene expression and promoter analysis in transgenic tomato. Plant Mol. Biol. 38 449–460

    CAS  PubMed  Google Scholar 

  • Bang SW, Park SH, Jeong JS, Kim YS, Jung H, Ha SH and Kim JK 2012 Characterization of the stress-inducible OsNCED3 promoter in different transgenic rice organs and over three homozygous generations. Planta 237 211–224.

    PubMed  Google Scholar 

  • Banerjee J, Sahoo DK, Dey N, Houtz RL and Maiti IB 2013 An intergenic region shared by At4g35985 and At4g35987 in Arabidopsis thaliana is a tissue specific and stress inducible bidirectional promoter analyzed in transgenic arabidopsis and tobacco plants. PLoS One. 8 e79622

    PubMed  PubMed Central  Google Scholar 

  • Banerjee J, Sahoo DK, Raha S, Sarkar S, Dey N and Maiti IB 2015 A region containing an as-1 element of Dahlia Mosaic Virus (DaMV) subgenomic transcript promoter plays a key role in green tissue and root-specific expression in plants Plant Mol. Biol. Rep. 33 532–556

    CAS  Google Scholar 

  • Belhaj K, Chaparral-Garcia A, Amount S and Nekrasov V 2013 Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system. Plant Methods 9 1–10

  • Benn G, Wang CQ, Hicks DR, Stein J, Guthrie C and Dehesh K 2014 A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J. 80 82–92

    CAS  PubMed  PubMed Central  Google Scholar 

  • Ben-Saad R, Meynard D, Ben-Romdhane W, Mieulet D, Verdeil JL, Al-Doss A, Guiderdoni E and Hassairi A 2015 The promoter of the AlSAP gene from the halophyte grass Aeluropus littoralis directs a stress-inducible expression pattern in transgenic rice plants. Plant Cell Rep. 34 1791–1806

    CAS  PubMed  Google Scholar 

  • Benfey PN, Ren L and Chua NH 1990 Tissue-specific expression from CaMV35S enhancer subdomains in early stages of plant development. EMBO J. 9 1677–1684

    CAS  PubMed  PubMed Central  Google Scholar 

  • Benfey PN, Takatsuji H, Ren L, Shah DM and Chua NH 1990 Sequence requirements of the 5-enolpyruvylshikimate-3-phosphate synthase 5[prime]-upstream region for tissue-specific expression in flowers and seedlings. Plant Cell 2 849–856

    CAS  PubMed  PubMed Central  Google Scholar 

  • Beringer J, Chen W, Garton R, Sardesai N, Wang PH, Zhou N, Gupta M and Wu H 2017 Comparison of the impact of viral and plant-derived promoters regulating selectable marker gene on maize transformation and transgene expression. Plant Cell Rep. 36 519–528

    CAS  PubMed  PubMed Central  Google Scholar 

  • Bhattacharyya J, Chowdhury AH, Ray S, Jha JK, Das S, Gayen S, Chakraborty A, Mitra J, Maiti MK, Basu A and Sen SK 2011 Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants Plant Cell Rep. 31 271–279

    PubMed  Google Scholar 

  • Bhattacharyya S, Dey N and Maiti IB 2002 Analysis of cis-sequence of subgenomic transcript promoter from the Figwort mosaic virus and comparison of promoter activity with the cauliflower mosaic virus promoters in monocot and dicot cells. Virus Res. 90 47–62

    PubMed  Google Scholar 

  • Bhattacharyya S, Pattanaik S and Maiti IB 2003 Intron-mediated enhancement of gene expression in transgenic plants using chimeric constructs composed of the Peanut chlorotic streak virus (PClSV) promoter-leader and the antisense orientation of PClSV ORF VII (p7R). Planta 218 115–24

    CAS  PubMed  Google Scholar 

  • Bhatnagar-Mathur P, Devi MJ, Reddy DS, Lavanya M, Vadez V, Serraj R, Yamaguchi-Shinozaki K and Sharma KK 2007 Stress-inducible expression of At DREB1A in transgenic peanut (Arachis hypogaea L) increases transpiration efficiency under water-limiting conditions. Plant Cell Rep. 26 2071–2082

    CAS  PubMed  Google Scholar 

  • Bhuria M, Goel P, Kumar S and Singh AK 2016 The Promoter of AtUSPis co-regulated by phytohormones and abiotic stresses in Arabidopsis thaliana. Front Plant Sci. 7 1957

    PubMed  PubMed Central  Google Scholar 

  • Bihmidine S, Lin J, Stone JM, Awada T, Specht JE and Clemente TE 2013 Activity of the Arabidopsis RD29A and RD29B promoter elements in soybean under water stress. Planta 23 755–64

    Google Scholar 

  • Biłas R, Szafran K, Hnatuszko-Konka K and Kononowicz AK 2016 Cis-regulatory elements used to control gene expression in plants Plant Cell Tiss. Org. Cul. 127 269–287

    Google Scholar 

  • Bonetta D and Mccourt P 1998 Genetic analysis ofABA signal transduction pathways. Trends Plant Sci. 3 231–235

    Google Scholar 

  • Borah BK, Zarreen F, Baruah G and Dasgupta I 2016 Insights into the control of geminiviral promoters. Virology 495 101–111

    CAS  PubMed  Google Scholar 

  • Bortesi L and Fischer R 2015 The CRISPR/Cas9 system for plant genome editing and beyond. Biotechnol. Adv. 33 41–52

    CAS  Google Scholar 

  • Bucchini L and Goldman LR 2002 Starlink corn: a risk analysis Environ Health Perspect 110 5

    CAS  PubMed  PubMed Central  Google Scholar 

  • Biłas R, Szafran K, Hnatuszko-Konka K and Kononowicz AK 2016 Cis-regulatory elements used to control gene expression in plants Plant Cell Tiss. Org. Cult. 127 269–287

    Google Scholar 

  • Cahoon EB and Shanklin J 2000 Substrate-dependent mutant complementation to select fatty acid desaturase variants for metabolic engineering of plant seed oils. Proc Nat Acad Sci. 97 12350–12355

  • Cao S, Kumimoto RW, Gnesutta N, Calogero AM, Mantovani R and Holt BF 2014 A distal CCAAT/NUCLEAR FACTOR Y complex promotes chromatin looping at the FLOWERING LOCUS T promoter and regulates the timing of flowering in Arabidopsis. Plant Cell 26 1009–1017

    CAS  PubMed  PubMed Central  Google Scholar 

  • Cazzonelli CI, McCallum EJ, Lee R and Botella JR 2005 Characterization of a strong constitutive mung bean (Vigna radiata L) promoter with a complex mode of regulation in planta. Transgenic Res. 14 941–967

    CAS  PubMed  Google Scholar 

  • Chakravarthi M, Syamaladevi DP, Harunipriya P, Augustine SM and Subramonian N 2016 A novel PR10 promoter from Erianthus arundinaceus directs high constitutive transgene expression and is enhanced upon wounding in heterologous plant systems. Mol. Biol. Rep. 43 17–30

    CAS  PubMed  Google Scholar 

  • Chaturvedi CP, Sawant SV, Kiran K, Mehrotra R, Lodhi N, Ansari SA and Tuli R 2006 Analysis of polarity in the expression from a multifactorial bidirectional promoter designed for high-level expression of transgenes in plants. J. Biotechnol. 123 1231–1312

  • Char SN, Neelakandan AK, Nahampun H, Frame B, Main M, Spalding M H et al (2017) An Agrobacterium‐delivered CRISPR/Cas9 system for high‐frequency targeted mutagenesis in maize. Plant Biotechnol. J. 15 257–268.

  • Chen Y, Chen S, Chen F, Li P, Chen L, Guan Z and Chang Q 2012 Functional characterization of a Chrysanthemum dichrum stress-related promoter. Mol. Biotechnol. 52 161–169

    CAS  PubMed  Google Scholar 

  • Chen L, Jiang B, Wu C, Sun S, Hou W and Han T 2014 GmPRP2 promoter drives root-preferential expression in transgenic Arabidopsis and soybean hairy roots. BMC Plant Biol. 14 245

    PubMed  PubMed Central  Google Scholar 

  • Christensen AH, Sharrock RA and Quail PH 1992 Maize polyubiquitin genes: structure hermal perturbation of expression and transcript splicing and promoter activity following transfer to protoplasts by electroporation. Plant Mol. Biol. 18 675–689

    CAS  PubMed  Google Scholar 

  • Cominelli E, Galbiati M, Albertini A, Fornara F, Conti L, Coupland G and Tonelli C 2011 DOF-binding sites additively contribute to guard cell-specificity of AtMYB60 promoter. BMC Plant Biol. 11 162

    CAS  PubMed  PubMed Central  Google Scholar 

  • Company N, Nadal A, Ruiz C and Pla M 2014 Production of phytotoxic cationic alpha-helical antimicrobial peptides in plant cells using inducible promoters. PLoS One 9 e109990

    PubMed  PubMed Central  Google Scholar 

  • Conforte AJ, Guimaraes-Dias F, Neves-Borges AC, Bencke-Malato M, Felix-Whipps D and Alves-Ferreira M (2017 Isolation and characterization of a promoter responsive to salt osmotic and dehydration strsses in soybean. Genet. Mol. Biol. 40 226–237

    CAS  PubMed  PubMed Central  Google Scholar 

  • Coussens G, Aesaert S, Verelst W, Demeulenaere M, De Buck S, Njuguna E, Inze D and Van Lijsebettens M 2012 Brachypodium distachyon promoters as efficient building blocks for transgenic research in maize. J. Exp. Bot. 63 4263–4273

    CAS  PubMed  Google Scholar 

  • Dean GH, Jin Z, Shi L, Esfandiari E, McGee R, Nabata K et al 2017 Identification of a seed coat-specific promoter fragment from the Arabidopsis MUCILAGE-MODIFIED4 gene. Plant Mol. Bio. 95 33–50

  • Dhankher OP, Li Y, Rosen BP, Shi J, Salt D, Senecoff JF, Sashti NA and Meagher RB 2002 Engineering tolerance and hyperaccumulation of arsenic in plants by combining arsenate reductase and gamma-glutamylcysteine synthetase expression. Nat. Biotechnol. 20 1140–1145

    CAS  PubMed  Google Scholar 

  • Divya K, Kishor PBK, Bhatnagar-Mathur P, Singam P, Sharma KK, Vadez V and Reddy PS 2019 Isolation and functional characterization of three abiotic stress-inducible (Apx, Dhn and Hsc70) promoters from pearl millet (Pennisetum glaucum L) Mol. Biol.Rep. 46 6039–6052

    CAS  PubMed  Google Scholar 

  • Divya K, Bhatnagar-Mathur P, Sharma KK, Vadez V and Reddy PS 2020 Functional characterization of the promoter of pearl millet heat shock protein 10 (PgHsp10) in response to abiotic stresses in transgenic tobacco plants. Int. J. Biol. Macromol. 12 103–110.

    Google Scholar 

  • Du L, Lou Q, Zhang X, Jiao S, Liu Y and Wang Y 2014 Construction of flower-specific chimeric promoters and analysis of their activities in transgenic Torenia. Plant Mol. Biol. Rep. 32 234–245

    Google Scholar 

  • Dwivedi KK, Roche D and Carman JG 2010 Expression in Arabidopsis of a nucellus-specific promoter from watermelon (Citrullus lanatus). Plant Sci. 179 549–552

    CAS  PubMed  Google Scholar 

  • Erpen L, Tavano ECR, Harakava R, Dutt M, Grosser JW, Piedade SMS and Mourão Filho FAA 2018 Isolation characterization and evaluation of three Citrus sinensis-derived constitutive gene promoters. Plant Cell Rep. 37 1113–1125

    CAS  PubMed  Google Scholar 

  • Erpen-Dalla Corte L, Mendes BMJ, Mourão Filho FAA, Grosser JW and Dutt M 2020 Functional characterization of full-length and 5′ deletion fragments of Citrus sinensis-derived constitutive promoters in Nicotiana benthamiana. In Vitro Cell. Dev. Biol. Plant 56 280–289

    CAS  Google Scholar 

  • Espley RV, Brendolise C, Chagne D, Kutty-Amma S, Green S, Volz R, Putterill J, Schouten HJ, Gardiner SE, Hellens RP and Allan AC 2009 Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples. Plant Cell 21 168–183

    CAS  PubMed  PubMed Central  Google Scholar 

  • Fang RX, Nagy F, Sivasubramaniam S and Chua NH 1989 Multiple cis regulatory elements for maximal expression of the cauliflower mosaic virus 35S promoter in transgenic plants. Plant Cell, 1 141–150

    CAS  PubMed  PubMed Central  Google Scholar 

  • Fang Y, Wang L, Wang XY, Ou Q, Pan X, Xiao J and Zhang W 2016 Histone modifications facilitate the coexpression of bidirectional promoters in rice. BMC Genomics 17 768

    PubMed  PubMed Central  Google Scholar 

  • Fasani E, DalCorso G, Varotto C, Li M, Visioli G, Mattarozzi M and Furini A 2017 The MTP1 promoters from Arabidopsis halleri reveal cis-regulating elements for the evolution of metal tolerance. New Phytol. 214 1614–1630

    CAS  PubMed  Google Scholar 

  • Fauser F, Schiml S and Puchta H 2014 Both CRISPR/C as‐based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana. Plant J. 79 348–359

    CAS  PubMed  Google Scholar 

  • Feki K, Brini F, Ben Amar S, Saibi W and Masmoudi K 2015 Comparative functional analysis of two wheat Na(+)/H(+) antiporter SOS1 promoters in Arabidopsis thaliana under various stress conditions. J. Appl. Genet. 56 15–26.

    CAS  PubMed  Google Scholar 

  • Feng Z, Zhang B, Ding W, Liu X, Yang DL, Wei P and Zhu JK 2013 Efficient genome editing in plants using a CRISPR/Cas system. Cell Res. 23 1229

    CAS  PubMed  PubMed Central  Google Scholar 

  • Feng C, Su H, Bai H, Wang R, Liu Y, Guo X and Han F 2018 High‐efficiency genome editing using a dmc1 promoter‐controlled CRISPR/Cas9 system in maize. Plant Biotechnol. J. 16 1848–1857

    CAS  PubMed  PubMed Central  Google Scholar 

  • Forde BG, Heyworth A, Pywell J and Kreis M 1985 Nucleotide sequence of a B1 hordein gene and the identification of possible upstream regulatory elements in endosperm storage protein genes from barley wheat and maize. Nucleic Acids Res. 13 7327–7339

    CAS  PubMed  PubMed Central  Google Scholar 

  • Francia P, Simoni L, Cominelli E, Tonelli C and Galbiati M 2008 Gene trap-based identification of a guard cell promoter in Arabidopsis. Plant Signal. Beh. 3 684–686

    Google Scholar 

  • Fromm ME, Morrish F, Armstrong C, Williams R, Thomas J and Klein TM 1990 Inheritance and expression of chimeric genes in the progeny of transgenic maize plants. Biotechnology (NY) 8 833–839

    CAS  Google Scholar 

  • Gago J, Grima-Pettenati J and Gallego PP 2011 Vascular-specific expression of GUS and GFP reporter genes in transgenic grapevine (Vitis vinifera L cv Albarino) conferred by the EgCCR promoter of Eucalyptus gunnii. Plant Physiol. Biochem. 49 413–419

    CAS  PubMed  Google Scholar 

  • Ganguly M, Roychoudhury A, Sarkar SN, Sengupta DN, Datta SK and Datta K 2011 Inducibility of three salinity/abscisic acid-regulated promoters in transgenic rice with gusA reporter gene Plant Cell Rep. 30 1617–1625

    CAS  PubMed  Google Scholar 

  • Gerasymenko IM and Sheludko YV 2017 Synthetic cold-inducible promoter enhances recombinant protein accumulation during Agrobacterium-mediated transient expression in Nicotiana excelsior at chilling temperatures Biotechnol. Lett. 39 1059–1067

    CAS  Google Scholar 

  • Govindarajulu M, Elmore JM, Fester T and Taylor CG 2008 Evaluation of constitutive viral promoters in transgenic soybean roots and nodules. Mol. Plant Microbe Interact. 21 1027–1035

    CAS  PubMed  Google Scholar 

  • Guo HS, Fei JF, Xie Q and Chua NH 2003 A chemical-regulated inducible RNAi system in plants. Plant J. 34 383–392

    CAS  PubMed  Google Scholar 

  • Guo J, Li K, Jin L, Xu R, Miao K, Yang F and Miao Y 2018 A simple and cost-effective method for screening of CRISPR/Cas9-induced homozygous/biallelic mutants. Plant Methods 14 40

    PubMed  PubMed Central  Google Scholar 

  • Gupta P, Raghuvanshi S and Tyagi AK 2001 Assessment of the efficiency of various gene promoters via biolistics in leaf and regenerating seed callus of millets Eleusine coracana and Echinochlo acrusgalli. Plant Biotech. 18 275–282

    CAS  Google Scholar 

  • Hadley CW, Miller EC, Schwartz SJ and Clinton SK 2002 Tomatoes lycopene and prostate cancer: progress and promise. Exp. Biol. Med. 227 869–880

    CAS  Google Scholar 

  • Han YJ, Kim YM, Hwang OJ and Kim JI 2015 Characterization of a small constitutive promoter from Arabidopsis translationally controlled tumor protein (AtTCTP) gene for plant transformation. Plant Cell Rep. 34 265–275

    CAS  PubMed  Google Scholar 

  • Hannoufa A, Negruk V, Eisner G and Lemieux B 1996 The CER3 gene of Arabidopsis thaliana is expressed in leaves stems roots flowers and apical meristems. Plant J. 10 459–467

    CAS  PubMed  Google Scholar 

  • Hashimoto R, Ueta R, Abe C, Osakabe Y and Osakabe K 2018 Efficient multiplex genome editing induces precise and self-ligated type mutations in tomato plants. Front. Plant Sci. 9 916

    PubMed  PubMed Central  Google Scholar 

  • Hernandez-Garcia CM and Finer JJ 2014 Identification and validation of promoters and cis-acting regulatory elements. Plant Sci. 217–218 109–119

    PubMed  Google Scholar 

  • Hernandez-Garcia CM and Finer JJ 2016 A novel cis-acting element in the GmERF3 promoter contributes to inducible gene expression in soybean and tobacco after wounding. Plant Cell Rep. 35 303–316

    CAS  PubMed  Google Scholar 

  • Hernandez-Garcia CM, Martinelli AP, Bouchard RA and Finer JJ 2009 A soybean (Glycine max) polyubiquitin promoter gives strong constitutive expression in transgenic soybean. Plant Cell Rep. 28 837–849

    CAS  PubMed  Google Scholar 

  • Hou J, Jiang P, Qi S, Zhang K, He Q, Xu C, Ding Z, Zhang K and Li K 2016 Isolation and functional validation of salinity and osmotic stress inducible promoter from the maize Type-II H+-Pyrophosphatase gene by deletion analysis in transgenic tobacco Plants. PLoS One 11 e0154041

    PubMed  PubMed Central  Google Scholar 

  • Hsu PD, Lander ES and Zhang F 2014 Development and applications of CRISPR-Cas9 for genome engineering. Cell 157 1262–1278

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hyun Y, Kim J, Cho SW, Choi Y, Kim JS and Coupland G 2015 Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles. Planta 241 271–284

    CAS  PubMed  Google Scholar 

  • Jameel A, Noman M, Liu W, Ahmad N, Wang F, Li X and Li H 2020 Tinkering cis motifs jigsaw puzzle led to root-specific drought-inducible novel synthetic promoters. Int. J. Mol. Sci. 21 1357

    CAS  PubMed Central  Google Scholar 

  • Jiang P, Zhang K, Ding Z, He Q, Li W, Zhu S and Li K 2018 Characterization of a strong and constitutive promoter from the Arabidopsis serine carboxypeptidase-like gene AtSCPL30 as a potential tool for crop transgenic breeding. BMC Biotech. 18 59

    Google Scholar 

  • Johnson JA, Bragg JN, Lawrence DM and Jackson AO 2003 Sequence elements controlling expression of Barley stripe mosaic virus subgenomic RNAs in vivo. Virology 313 66–80

    CAS  PubMed  PubMed Central  Google Scholar 

  • Kakrana A, Kumar A, Satheesh V, Abdin MZ, Subramaniam K, Bhattacharya RC and Jain PK 2017 Identification validation and utilization of novel nematode-responsive root-specific promoters in Arabidopsis for inducing host-delivered RNAi mediated root-knot nematode resistance. Front Plant Sci. 8 2049

    PubMed  PubMed Central  Google Scholar 

  • Kanofsky K, Lehmeyer M, Schulze J and Hehl R 2016 Analysis of microbe-associated molecular pattern-responsive synthetic promoters with the parsley protoplast system. Methods Mol. Biol. 1482 163–174

    CAS  PubMed  Google Scholar 

  • Khanthapok P, Sang-Awut N, Chakhonkaen S, Pitngam K, Osadcenco A, Sukrong S and Muangprom A 2018 Identification of ethanol-inducible genes and isolation of the myb-related protein-like promoter in Oryza sativa L. J. Plant Growth Regul. 37 452–470

    CAS  Google Scholar 

  • Keadtidumrongkul P, Suttangkakul A, Pinmanee P, Pattana K, Kittiwongwattana C, Apisitwanich S and Vuttipongchaikij S 2017 Growth modulation effects of CBM2a under the control of AtEXP4 and CaMV35S promoters in Arabidopsis thaliana, Nicotiana tabacum and Eucalyptus camaldulensis. Transgenic Res. 26 447–463

    CAS  PubMed  Google Scholar 

  • Kelly G, Lugassi N, Belausov E, Wolf D, Khamaisi B, Brandsma D, Kottapalli J, Fidel L, Ben-Zvi B, Egbaria A, Acheampong AK, Zheng C, Or E, Distelfeld A, David-Schwartz R, Carmi N and Granot D 2017 The Solanum tuberosum KST1 partial promoter as a tool for guard cell expression in multiple plant species. J. Exp. Bot. 68 2885–2897

    CAS  PubMed  PubMed Central  Google Scholar 

  • Khan ZA, Abdin MZ and Khan JA 2015 Functional characterization of a strong bi-directional constitutive plant promoter isolated from cotton leaf curl Burewala virus. PLoS One 10 e0121656

    PubMed  PubMed Central  Google Scholar 

  • Kevin E, Mc Bride and Kristin R 1989 Improved binary vectors for Agrobacterium-mediated plant transformation. SummerfeltCalgene Inc. 1920 Fifth St., Davis, CA 95616, USA

  • Kluth A, Sprunck S, Becker D, Lorz H and Lutticke S 2002 5’ deletion of a gbss1 promoter region from wheat leads to changes in tissue and developmental specificities. Plant Mol. Biol. 49 669–682

    CAS  PubMed  Google Scholar 

  • Koia J, Moyle R, Hendry C, Lim L and Botella JR 2013 Pineapple translation factor SUI1 and ribosomal protein L36 promoters drive constitutive transgene expression patterns in Arabidopsis thaliana. Plant Mol. Biol. 81 327–336

    CAS  PubMed  Google Scholar 

  • Koschmann J, Machens F, Becker M, Niemeyer J, Schulze J, Bulow L, Stahl DJ and Hehl R 2012 Integration of bioinformatics and synthetic promoters leads to the discovery of novel elicitor-responsive cis-regulatory sequences in Arabidopsis. Plant Physiol. 160 178–191

    CAS  PubMed  PubMed Central  Google Scholar 

  • Kyozuka J, Fujimoto H, Izawa T and Shimamoto K 1991 Anaerobic induction and tissue-specific expression of maize Adh1 promoter in transgenic rice plants and their progeny. Mol. Gen. Genet. 228 40–48

    CAS  PubMed  Google Scholar 

  • Lamacchia C, Shewry PR, Di Fonzo N, Forsyth JL, Harris N, Lazzeri PA, Napier JA, Halford NG and Barcelo P 2001 Endosperm-specific activity of a storage protein gene promoter in transgenic wheat seed. J. Exp. Bot. 52 243–250

    CAS  PubMed  Google Scholar 

  • Lessard PA, Kulaveerasingam H, York GM, Strong A and Sinskey AJ 2002 Manipulating gene expression for the metabolic engineering of plants. Metab. Eng. 4 467–479

  • Lewinsohn E, Schalechet F, Wilkinson J, Matsui K, Tadmor Y, Nam KH, Amar O, Lastochkin E, Larkov O, Ravid U, Hiatt W, Gepstein S and Pichersky E 2001 Enhanced levels of the aroma and flavor compound S-linalool by metabolic engineering of the terpenoid pathway in tomato fruits. Plant Physiol. 127 1256–1265

    CAS  PubMed  PubMed Central  Google Scholar 

  • Li F, Han Y, Feng Y, Xing S, Zhao M, Chen Y and Wang W 2013 Expression of wheat expansin driven by the RD29 promoter in tobacco confers water-stress tolerance without impacting growth and development. J. Biotechnol. 163 281–291

    CAS  PubMed  Google Scholar 

  • Li JF, Norville JE, Aach J, McCormack M, Zhang D, Bush J, Church GM and Sheen J 2013 Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat. Biotechnol. 31 688–691

    CAS  PubMed  PubMed Central  Google Scholar 

  • Li M, Wang X, Cao Y, Liu X, Lin Y, Ou Y, Zhang H and Liu J 2013a Strength comparison between cold-inducible promoters of Arabidopsiscor15a and cor15b genes in potato and tobacco. Plant Physiol. Biochem. 71 77–86

    CAS  PubMed  Google Scholar 

  • Li M, Xie C, Song B, Ou Y, Lin Y, Liu X, Zhang H and Liu J 2015 Construction of efficient tuber-specific and cold-inducible promoters in potato. Plant Sci. 23 514–524

    Google Scholar 

  • Li T, Huang S, Zhou J and Yang B 2013 Designer TAL effectors induce disease susceptibility and resistance to Xanthomonas oryzaepv oryzae in rice. Mol. Plant 6 781–789

    CAS  PubMed  Google Scholar 

  • Li Y, Liu S, Yu Z, Liu Y and Wu P 2013b Isolation and characterization of two novel root-pecific promoters in rice (Oryza sativa L). Plant Sci. 207 37–44

    CAS  PubMed  Google Scholar 

  • Li J, Xu RF, Qin RY, Ma H, Li H, Zhang YP, Li L, Wei PC and Yang JB 2014 Isolation and functional characterization of a novel rice constitutive promoter. Plant Cell Rep. 33 1651–60

    CAS  PubMed  Google Scholar 

  • Li Z, Jayasankar S and Gray DJ 2001 Expression of a bifunctional green fluorescent protein (GFP) fusion marker under the control of three constitutive promoters and enhanced derivatives in transgenic grape (Vitis vinifera). Plant Sci. 160 877–887

    CAS  PubMed  Google Scholar 

  • Liu C, Fukumoto T, Matsumoto T, Gena P, Frascaria D, Kaneko T et al 2013 Aquaporin OsPIP1; 1 promotes rice salt resistance and seed germination. Plant Physiol. Biochem. 63 151–158

  • Liu W, Mazarei M, Peng Y, Fethe MH, Rudis MR, Lin J, Millwood RJ, Arelli PR and Stewart CN 2014 Computational discovery of soybean promoter cis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters. Plant Biotechnol. J. 12 1015–1026

    CAS  PubMed  Google Scholar 

  • Liu YG and Whittier RF 1995 Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics 25 674–681

    CAS  PubMed  Google Scholar 

  • Liu X, Yang W, Li Y, Li S, Zhou X, Zhao Q, Fan Y, Lin M and Chen R 2016 The intergenic region of the maize defensin-like protein genes Def1 and Def2 functions as an embryo-specific asymmetric bidirectional promoter. J. Exp. Bot. 67 4403–4413

    CAS  PubMed  PubMed Central  Google Scholar 

  • Liu Z, Luo QH, Wang JM, Li XF and Yang Y 2015 Functional characterization and analysis of the Arabidopsis UGT71C5 promoter region. Genet. Mol. Res. 14 191 73–83

    Google Scholar 

  • Long L, Guo DD, Gao W, Yang WW, Hou LP, Ma XN and Song CP 2018 Optimization of CRISPR/Cas9 genome editing in cotton by improved sgRNA expression. Plant Methods 14 85

    PubMed  PubMed Central  Google Scholar 

  • Lota F, Wegmüller S, Buer B, Sato S, Bräutigam A, Hanf B and Bucher M 2013 The cis-acting CTTC-P1BS module is indicative for gene function of LjVTI12 a Qb-SNARE protein gene that is required for arbuscule formation in Lotus japonicas. Plant J. 74 280–293

    CAS  PubMed  Google Scholar 

  • Ma X, Zhang Q, Zhu Q, Liu W, Chen Y, Qiu R et al. 2015 A robust CRISPR/Cas9 system for convenient high-efficiency multiplex genome editing in monocot and dicot plants. Mol. Plant 8 1274–1284

    CAS  PubMed  Google Scholar 

  • Ma F, Qi H, Hu Y, Jiang Q, Zhang LG, Xue P and Zhang Q 2018 The mitochondrial endonuclease M20 Participates in the down-regulation of mitochondrial DNA in pollen cells. Plant Physiol. 178 1537–1550

    CAS  PubMed  PubMed Central  Google Scholar 

  • Maiti IB and Shepherd RJ 1998 Isolation and expression analysis of peanut chlorotic streak caulimovirus (PClSV) full-length transcript (FLt) promoter in transgenic plants. Biochem. Biophys. Res. Commun. 244 440–444

    CAS  PubMed  Google Scholar 

  • Malik K, Wu K, Li XQ, Martin-Heller T, Hu M, Foster E, Tian L, Wang C, Ward K, Jordan M, Brown D, Gleddie S, Simmonds D, Zheng S, Simmonds J and Miki B 2002 A constitutive gene expression system derived from the tCUP cryptic promoter elements. Theor. Appl. Genet. 105 505–514

    CAS  PubMed  Google Scholar 

  • Mann DG, King ZR, Liu W, Joyce BL, Percifield RJ, Hawkins JS, LaFayette PR, Artelt BJ, Burris JN, Mazarei M, Bennetzen JL, Parrott WA and Stewart CN 2011 Switchgrass (Panicum virgatum L) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation. BMC Biotechnol. 11 74

    CAS  PubMed  PubMed Central  Google Scholar 

  • Mao Y, Zhang Z, Feng Z, Wei P, Zhang H, Botella JR and Zhu JK 2016 Development of germ-line-specific CRISPR-Cas9 systems to improve the production of heritable gene modifications in Arabidopsis. Plant Biotechnol. J. 14 519–532

    CAS  PubMed  Google Scholar 

  • Marshallsay C, Connelly S and Filipowicz W 1992 Characterization of the U3 and U6 snRNA genes from wheat: U3 snRNA genes in monocot plants are transcribed by RNA polymerase III. Plant Mol. Biol. 19 973–983

    CAS  PubMed  Google Scholar 

  • Marzabal P, Busk PK, Ludevid MD and Torrent M 1998 The bifactorial endosperm box of gamma-zein gene: characterisation and function of the Pb3 and GZM cis-acting elements. Plant J. 16 41–52

    CAS  PubMed  Google Scholar 

  • McElroy D, Blowers AD, Jenes B and Wu R 1991 Construction of expression vectors based on the rice actin 1 (Act1) 5’ region for use in monocot transformation. Mol. Gen. Genet. 231 150–160

    CAS  PubMed  Google Scholar 

  • Mehrotra R and Mehrotra S 2010 Promoter activation by ACGT in response to salicylic and abscisic acids is differentially regulated by the spacing between two copies of the motif. J. Plant Physiol. 167 1214–1218

    CAS  PubMed  Google Scholar 

  • Meyer S, Mumm P, Imes D, Endler A, Weder B, Al‐Rasheid KA and Hedrich R 2010 AtALMT12 represents an R‐type anion channel required for stomatal movement in Arabidopsis guard cells. Plant J. 63 1054–1062

    CAS  PubMed  Google Scholar 

  • Miki D, Zhang W, Zeng W, Feng Z and Zhu JK 2018 CRISPR/Cas9-mediated gene targeting in Arabidopsis using sequential transformation. Nat. Commun. 9 1967

    Google Scholar 

  • Mikami M, Toki S, and Endo M 2017 In Planta processing of the SpCas9–gRNA complex. Plant Cell Physiol 58 1857–1867

  • Miyata LY, Harakava R, Stipp LC, Mendes BM, Appezzato-da-Glória B, de Assis Alves Mourão and Filho F 2012 GUS expression in sweet oranges (Citrus sinensisL Osbeck) driven by three different phloem-specific promoters. Plant Cell Rep. 31 2005–2013

  • Mittler R and Blumwald E 2010 Genetic engineering for modern agriculture: challenges and perspectives. Annu. Rev. Plant. Biol. 61 443–462

    CAS  PubMed  Google Scholar 

  • Nakashima K, Tran LS, Van Nguyen D, Fujita M, Maruyama K, Todaka D, Ito Y, Hayashi N, Shinozaki K and Yamaguchi-Shinozaki K 2007 Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J. 51 617–630

    CAS  PubMed  Google Scholar 

  • Naoumkina M and Dixon RA 2011 Characterization of the mannan synthase promoter from guar (Cyamopsis tetragonoloba). Plant Cell Rep. 30 997–1006

    CAS  PubMed  Google Scholar 

  • Nekrasov V, Staskawicz B, Weigel D, Jones JD and Kamoun S 2013 Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat. Biotech. 31 691

    CAS  Google Scholar 

  • Nicholass FJ, Smith CJ, Schuch W, Bird CR and Grierson D 1995 High levels of ripening-specific reporter gene expression directed by tomato fruit polygalacturonase gene-flanking regions. Plant Mol. Biol. 28 423–435

    CAS  PubMed  Google Scholar 

  • Nunberg AN, Li Z, Bogue MA, Vivekananda J, Reddy AS and Thomas TL 1994 Developmental and hormonal regulation of sunflower helianthinin genes:proximal promoter sequences confer regionalized seed expression. Plant Cell 6 473–486

    CAS  PubMed  PubMed Central  Google Scholar 

  • Obertello M, Santi C, Sy MO, Laplaze L, Auguy F, Bogusz D and Franche C 2005 Comparison of four constitutive promoters for the expression of transgenes in the tropical nitrogen-fixing tree Allocasuarina verticillata. Plant Cell Rep. 24 540–548

    CAS  PubMed  Google Scholar 

  • Odell JT, Nagy F and Chua NH 1985 Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature 313 810–812

    CAS  PubMed  Google Scholar 

  • Oh SJ, Song SI, Kim YS, Jang HJ, Kim SY, Kim M and Kim JK 2005 Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth. Plant Physiol. 138 341–351

    CAS  PubMed  PubMed Central  Google Scholar 

  • Ordon J, Bressan M, Kretschmer C, Dall’Osto L, Marillonnet S, Bassi R and Stuttmann J 2020 Optimized Cas9 expression systems for highly efficient Arabidopsis genome editing facilitate isolation of complex alleles in a single generation. Funct. Integr. Genomics 20 151–162

    CAS  PubMed  Google Scholar 

  • Osakabe Y, Osakabe K and Chiang VL 2009 Characterization of the tissue-specific expression of phenylalanine ammonia-lyase gene promoter from loblolly pine (Pinus taeda) in Nicotiana tabacum. Plant Cell Rep. 28 1309–1317

    CAS  PubMed  Google Scholar 

  • Park SH, Yi N, Kim YS, Jeong MH, Bang SW, Choi YD and Kim JK 2010 Analysis of five novel putative constitutive gene promoters in transgenic rice plants. J. Exp. Bot. 61 2459–2467

    CAS  PubMed  PubMed Central  Google Scholar 

  • Patro S, Maiti IB and Dey N 2013 Development of an efficient bi-directional promoter with tripartite enhancer employing three viral promoters. J. Biotechnol. 163 311–317

    CAS  PubMed  Google Scholar 

  • Porto MS, Pinheiro MP, Batista VG, dos Santos RC, Filho Pde A and de Lima LM 2014 Plant promoters: an approach of structure and function. Mol. Biotechnol. 56 38–49

    CAS  PubMed  Google Scholar 

  • Potenza C, Aleman L and Gopalan CS 2004 Targeting transgene expression in research agricultural and environmental applications: promoters used in plant transformation. InVitro Cell Dev. Biol. Plant 40 1–22

  • Que Q, Chilton M-DM, de Fontes CM, He C, Nuccio M, Zhu T, Wu Y, Chen JS, Shi L 2010 Trait stacking in transgenic crops: challenges and opportunities. GM Crops 1 220–229

    PubMed  Google Scholar 

  • Qiu CH, Li H, Li J, Qin RY, Xu RF, Yang YC, Ma H, Song FS, Li L, Wei PC and Yang JB 2015 Isolation and characterization of three cadmium-inducible promoters from Oryza sativa. J. Biotechnol. 216 1–19

    Google Scholar 

  • Rai M, He C and Wu R 2009 Comparative functional analysis of three abiotic stress-inducible promoters in transgenic rice. Transgenic Res. 187 87–99

    Google Scholar 

  • Rao TSRB, Naresh JV, Reddy PS, Reddy MK and Mallikarjuna G 2017 Expression of Pennisetum glaucum eukaryotic translational initiation factor 4A (PgeIF4A) confers improved drought salinity and oxidative stress tolerance in groundnut. Front. Plant Sci. 8 453

    Google Scholar 

  • Reddy CS, Vijayalakshmi M, Kaul T, Islam T and Reddy MK 2015 Improving flavour and quality of tomatoes by expression of synthetic gene encoding sweet protein monellin. Mol. Biotechnol. 57 448–53

    CAS  PubMed  Google Scholar 

  • Reddy PS, Mahanty S, Kaul T, Nair S, Sopory SK and Reddy MK 2008 A high-throughput genome-walking method and its use for cloning unknown flanking sequences. Anal. Biochem. 381 248–253

    CAS  PubMed  Google Scholar 

  • Rerksiri W, Zhang X, Xiong H and Chen X 2013 Expression and promoter analysis of six heat stress-inducible genes in rice. Sci. World J. 397401

  • Roccaro M, Ahmadinejad N, Colby T and Somssich IE 2013 Identification of functional cis-regulatory elements by sequential enrichment from a randomized synthetic DNA library. BMC Plant Biol. 13 164

    PubMed  PubMed Central  Google Scholar 

  • Rusconi F, Simeoni F, Francia P, Cominelli E, Conti L, Riboni M and Galbiati M 2013 The Arabidopsis thaliana MYB60 promoter provides a tool for the spatio-temporal control of gene expression in stomatal guard cells. J. Exp. Bot. 64 3361–3371

    CAS  PubMed  PubMed Central  Google Scholar 

  • Saed TR, Ismail I, Zainal Z and Abdullah SN 2012 The stearoyl-acyl-carrier-protein desaturase promoter (Des) from oil palm confers fruit-specific GUS expression in transgenic tomato. J. Plant Physiol. 1691 290–300

    Google Scholar 

  • Sahoo DK, Sarkar S, Raha S, Maiti IB and Dey N 2014 Comparative analysis of synthetic DNA promoters for high-level gene expression in plants. Planta 240 855–875

    CAS  PubMed  Google Scholar 

  • Sakaue K, Harada H and Matsuda Y 2008 Development of gene expression system in a marine diatom using viral promoters of a wide variety of origin. Physiol. Plant. 133 59–67

    CAS  PubMed  Google Scholar 

  • Sawant SV, Kiran K, Mehrotra R, Chaturvedi CP, Ansari SA, Singh P, Lodhi N and Tuli R 2005 A variety of synergistic and antagonistic interactions mediated by cis-acting DNA motifs regulate gene expression in plant cells and modulate stability of the transcription complex formed on a basal promoter. J. Exp. Bot. 56 2345–2353

    CAS  PubMed  Google Scholar 

  • Schiml S, Fauser F and Puchta H 2014 The CRISPR/C as system can be used as nuclease for in planta gene targeting and as paired nickases for directed mutagenesis in A rabidopsis resulting in heritable progeny. Plant J. 80 1139–1150

    CAS  PubMed  Google Scholar 

  • Schmulling T, Schell J and Spena A 1989 Promoters of the rolA B and C genes of Agrobacterium rhizogenes are differentially regulated in transgenic plants. Plant Cell 1 665–670

    CAS  PubMed  PubMed Central  Google Scholar 

  • Seemanpillai M, Dry I, Randles J and Rezaian A 2003 Transcriptional silencing of geminiviral promoter-driven transgenes following homologous virus infection. Mol. Plant Microbe. Interact. 16 429–438

    CAS  PubMed  Google Scholar 

  • Shah SH, Jan SA, Ahmad N, Khan SU, Kumar T, Iqbal A and Nasir F 2015 Use of different promoters in transgenic plant development: current challenges and future perspectives. Am Eurasian J. Agric. Environ. Sci. 15 664–675

    CAS  Google Scholar 

  • Shahmuradov IA, Umarov RK and Solovyev VV 2017 TSSPlant: a new tool for prediction of plant Pol II promoters. Nucleic Acids Res. 45 e65

    CAS  PubMed  PubMed Central  Google Scholar 

  • Shan Q, Wang Y, Chen K, Liang Z, Li J, Zhang Y et al 2013 Rapid and efficient gene modification in rice and Brachypodium using TALENs. Mol. Plant 6 1365–1368

  • Sharma KK, Lavanya M and Anjaiah V 2006 Agrobacterium-mediated production of transgenic pigeonpea (Cajanus cajan L. Millsp.) expressing the synthetic Bt cry1Ab gene. In Vitro Cell. Dev. Biol.-Plant 42 165–173

  • Shen YG, Zhang WK, Yan DQ, Du BX, Zhang JS, Liu Q and Chen SY 2003 Characterization of a DRE-binding transcription factor from a halophyte Atriplex hortensis. Theor. Appl. Genet. 107 155–161

    CAS  PubMed  Google Scholar 

  • Singer SD, Hily JM and Cox KD 2011 The sucrose synthase-1 promoter from Citrus sinensis directs expression of the β-glucuronidase reporter gene in phloem tissue and in response to wounding in transgenic plants. Planta 234 623–637

    CAS  PubMed  Google Scholar 

  • Smale ST and Kadonaga JT 2003 The RNA polymerase II core promoter Annu. Rev. Biochem 72 449–479

    CAS  Google Scholar 

  • Singh KB, Foley RC and Onate-Sanchez L 2002 Transcription factors in plant defense and stress responses. Curr. Opin. Plant Biol. 5 430–436

    CAS  PubMed  Google Scholar 

  • Srinath T, Reddy VD and Rao KV 2017 Isolation and functional characterization of a novel stress inducible promoter from pigeonpea (Cajanus cajan L). Plant Cell Tiss. Org. Cult. 128 457–468

    CAS  Google Scholar 

  • Srivastava VK, Raikwar S and Tuteja N 2014 Cloning and functional characterization of the promoter of PsSEOF1 gene from Pisum sativum under different stress conditions using Agrobacterium-mediated transient assay. Plant Signal Behav. 9 e29626

    PubMed  PubMed Central  Google Scholar 

  • Sunkara S, Bhatnagar-Mathur P and Sharma KK 2014 Isolation and functional characterization of a novel seed-specific promoter region from peanut. Appl Biochem Biotechnol. 172 325–339

  • Tao YB, He LL, Niu LJ and Xu ZF 2015 Isolation and characterization of an ubiquitin extension protein gene (JcUEP) promoter from Jatropha curcas. Planta 241 823–836

    CAS  PubMed  Google Scholar 

  • Tashkandi M, Ali Z, Aljedaani F, Shami A and Mahfouz MM 2018 Engineering resistance against Tomato yellow leaf curl virus via the CRISPR/Cas9 system in tomato. Plant Signal. Behav. 13 e1525996

    PubMed  PubMed Central  Google Scholar 

  • Tiwari V, Patel MK, Chaturvedi AK, Mishra A and Jha B 2016 Functional characterization of the tau class glutathione-S-transferases gene (SbGSTU) promoter of Salicornia brachiata under salinity and osmotic stress. PLoS One 11 e0148494

    PubMed  PubMed Central  Google Scholar 

  • Tompa M, Li N, Bailey TL, Church GM, et al. 2005 Assessing computational tools for the discovery of transcription factor binding sites Nat. Biotechnol. 23 137–144

    CAS  Google Scholar 

  • Twyman RM 2003 Growth and development: control of gene expression regulation of transcription; In Encyclopedia of applied plant sciences (Eds) Thomas B, Murphy DJ and Murray GB (Elsevier Science, London UK) pp 558–567

  • van der Geest AH and Hall TC 1997 The β-phaseolin5 matrix attachment region acts as an enhancer facilitator. Plant Mol. Bio. 33 553–557

    Google Scholar 

  • Van der Does D, Leon-Reyes A, Koornneef A, Van Verk MC, Rodenburg N, Pauwels L, Goossens A, Körbes AP, Memelink J, Ritsema T, Van Wees SC and Pieterse CM 2013 Salicylic acid suppresses jasmonic acid signaling downstream of SCFCOI1-JAZ by targeting GCC promoter motifs via transcription factor ORA59. Plant Cell 25 744–761

    PubMed  PubMed Central  Google Scholar 

  • Viana AA, Fragoso RR, Guimarães LM, Pontes N, Oliveira-Neto OB, Artico S et al 2011 Isolation and functional characterization of a cotton ubiquitination-related promoter and 5'UTR that drives high levels of expression in root and flower tissues. BMC Biotechnol. 11 115

  • Wang JY, Wang JP and Yang HF 2016a Identification and functional characterization of the NAC gene promoter from Populus euphratica. Planta 244 417–427

    CAS  PubMed  Google Scholar 

  • Wang P, Du Y, Zhao X, Miao Y and Song CP 2013 The MPK6-ERF6-ROS-responsive cis-acting Element7/GCC box complex modulates oxidative gene transcription and the oxidative response in Arabidopsis. Plant Physiol. 161 1392–1408

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wang R, Yan Y, Zhu M, Yang M, Zhou F, Chen H and Lin Y 2016b Isolation and Functional Characterization of bidirectional promoters in rice. Front. Plant Sci. 77 66

    Google Scholar 

  • Wang R, Zhu M, Ye R, Liu Z, Zhou F, Chen H and Lin Y 2015 Novel green tissue-specific synthetic promoters and cis-regulatory elements in rice. Sci. Rep. 51 825

    Google Scholar 

  • Wang J and Oard JH 2003 Rice ubiquitin promoters: deletion analysis and potential usefulnessin plant transformation systems:Genetic transformation and hybridization. Plant Cell Rep. 221 29–34

    Google Scholar 

  • Wang Y, Lin S, Song Q, Li K, Tao H, Huang J et al 2014 Genome-wide identification of heat shock proteins (Hsps) and Hsp interactors in rice: Hsp70s as a case study. BMC Genom. 15 344

  • Wang X, Wang L, Wang Y, Liu H, Hu D. Zhang N et al 2018 Arabidopsis PCaP2 plays an important role in chilling tolerance and ABA response by activating CBF-and SnRK2-mediated transcriptional regulatory network. Frontiers in plant science 9 215

  • Wu CY, Suzuki A, Washida H and Takaiwa F 1998 The GCN4 motif in a rice glutelin gene is essential for endosperm-specific gene expression and is activated by Opaque-2 in transgenic rice plants. Plant J. 14 673–683

    CAS  PubMed  Google Scholar 

  • Wu L, E-Mezawy A and Shah S 2011 A seed coat outer integument-specific promoter for Brassica napus. Plant Cell Rep. 30 75–80

    PubMed  Google Scholar 

  • Xiao K, Zhang C, Harrison M and Zeng YW 2005 Isolation and characterization of novel plant promoter that directs strong constitutive expression of transgene in plants. Mol. Breed. 15 221–231

    CAS  Google Scholar 

  • Xu D, Duan X, Wang B, Hong B, Ho T and Wu R 1996 Expression of a late embryogenesis abundant protein gene HVA1 from barley confers tolerance to water deficit and salt stress in transgenic rice. Plant Physiol. 110 249–257

    CAS  PubMed  PubMed Central  Google Scholar 

  • Xu F, Huang XH, Li LL, Deng G, Cheng H, Rong XF, Li JB and Cheng SY 2013 Molecular cloning and characterization of GbDXS and GbGGPPS gene promoters from Ginkgo biloba. Genet. Mol. Res. 4 293–301

    Google Scholar 

  • Yamaguchi-Shinozaki K and Shinozaki K 2006 Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu. Rev. Plant Biol. 57 781–803

    CAS  PubMed  Google Scholar 

  • Yan L, Wei S, Wu Y, Hu R, Li H, Yang W and Xie Q 2015 High-efficiency genome editing in Arabidopsisusing YAO promoter-driven CRISPR/Cas9 system. Mol. Plant 8 1820–1823

    CAS  PubMed  Google Scholar 

  • Yang IC, Iommarini JP, Becker DK, Hafner GJ, Dale JL and Harding RM 2003 A promoter derived from taro bacilliform badnavirus drives strong expression in transgenic banana and tobacco plants. Plant Cell Rep. 21 1199–1206

    CAS  PubMed  Google Scholar 

  • Yang J, Wang X, Hasi A and Wang Z 2018 Structural and functional analysis of a bidirectional promoter from Gossypium hirsutum in Arabidopsis. Int. J. Mol. Sci. 19 3291

    PubMed Central  Google Scholar 

  • Ye X, Al-Babili S, Kloti A, Zhang J, Lucca P, Beyer P and Potrykus I 2000 Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm. Science 287 303–305

    CAS  PubMed  Google Scholar 

  • Ye R, Zhou F and Lin Y 2012 Two novel positive cis-regulatory elements involved in green tissue-specific promoter activity in rice (Oryza sativa L ssp). Plant Cell Rep. 31 1159–72

    CAS  PubMed  Google Scholar 

  • Zavallo D, Lopez Bilbao M, Hopp HE and Heinz R 2010 Isolation and functional characterization of two novel seed-specific promoters from sunflower (Helianthus annuus L). Plant Cell Rep. 29 239–248

    CAS  PubMed  Google Scholar 

  • Zhang C, Pan S, Chen H, Cai T, Zhuang C, Deng Y, Zhuang Y, Zeng Y, Chen S and Zhuang W 2016 Characterization of NtREL1 a novel root-specific gene from tobacco and upstream promoter activity analysis in homologous and heterologous hosts. Plant Cell Rep. 35 757–769

    CAS  PubMed  Google Scholar 

  • Zhang H, Hou J, Jiang P, Qi S, Xu C, He Q, Ding Z, Wang Z, Zhang K and Li K 2016 Identification of a 467 bp promoter of maize phosphatidylinositol synthase gene (ZmPIS) which confers high-level gene expression and salinity or osmotic stress inducibility in transgenic tobacco. Front. Plant Sci. 7 42

    PubMed  PubMed Central  Google Scholar 

  • Zhou J, Yang Y, Wang X, Yu F, Yu C, Chen J, Cheng Y, Yan C and Chen J 2013 Enhanced transgene expression in rice following selection controlled by weak promoters. BMC Biotechnol. 27 13–29

    Google Scholar 

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Acknowledgements

PSR acknowledges financial support from the Department of Science and Technology, Govt. of India, New Delhi, for a fellowship and research grant through the INSPIRE Faculty Award No. IFALSPA-06 and Young Scientist Award SB/YS/LS-12/2013. This work was undertaken as part of the CGIAR Research Program on Grain Legumes & Dryland Cereals (CRP-GLDC).

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This article is part of the Topical Collection: Genetic Intervention in Plants: Mechanisms and Benefits.

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Kummari, D., Palakolanu, S.R., Kishor, P.B.K. et al. An update and perspectives on the use of promoters in plant genetic engineering. J Biosci 45, 119 (2020). https://doi.org/10.1007/s12038-020-00087-6

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