Abstract
Brain network analysis is one efficient tool in exploring human brain diseases and can differentiate the alterations from comparative networks. The alterations account for time, mental states, tasks, individuals, and so forth. Furthermore, the changes determine the segregation and integration of functional networks that lead to network reorganization (or reconfiguration) to extend the neuroplasticity of the brain. Exploring related brain networks should be of interest that may provide roadmaps for brain research and clinical diagnosis. Recent electroencephalogram (EEG) studies have revealed the secrets of the brain networks and diseases (or disorders) within and between subjects and have provided instructive and promising suggestions and methods. This review summarized the corresponding algorithms that had been used to construct functional or effective networks on the scalp and cerebral cortex. We reviewed EEG network analysis that unveils more cognitive functions and neural disorders of the human and then explored the relationship between brain science and artificial intelligence which may fuel each other to accelerate their advances, and also discussed some innovations and future challenges in the end.
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Acharya UR, Oh SL, Hagiwara Y, Tan JH, Adeli H, Subha DP (2018) Automated EEG-based screening of depression using deep convolutional neural network. Comput Methods Progr Biomed 161:103–113. https://doi.org/10.1016/j.cmpb.2018.04.012
Adolphs R (2009) The social brain: neural basis of social knowledge. Annu Rev Psychol 60:693–716. https://doi.org/10.1146/annurev.psych.60.110707.163514
Aerts H, Fias W, Caeyenberghs K, Marinazzo D (2016) Brain networks under attack: robustness properties and the impact of lesions. Brain 139:3063–3083. https://doi.org/10.1093/brain/aww194
Alavash M, Tune S, Obleser J (2019) Modular reconfiguration of an auditory control brain network supports adaptive listening behavior. Proc Natl Acad Sci USA 116:660–669. https://doi.org/10.1073/pnas.1815321116
Alsaadi TM, Marquez AV (2005) Psychogenic nonepileptic seizures. Am Fam Physician 72:849–856 (PMID: 16156345)
Alves NT, Fukusima SS, Aznar-Casanova JA (2008) Models of brain asymmetry in emotional processing. Psychol Neurosci 1:63–66. https://doi.org/10.3922/j.psns.2008.1.010
Anticevic A, Murray JD, Barch DM (2015) Bridging levels of understanding in Schizophrenia through computational modeling. Clin Psychol Sci 3:433–459. https://doi.org/10.1177/2167702614562041
Asadzadeh S, Yousefi Rezaii T, Beheshti S, Delpak A, Meshgini S (2020) A systematic review of EEG source localization techniques and their applications on diagnosis of brain abnormalities. J Neurosci Methods 339:108740. https://doi.org/10.1016/j.jneumeth.2020.108740
Athanasiou A, Klados MA, Pandria N, Foroglou N, Kavazidi KR, Polyzoidis K, Bamidis PD (2017) A systematic review of investigations into functional brain connectivity following spinal cord injury. Front Hum Neurosci 11:517. https://doi.org/10.3389/fnhum.2017.00517
Baccala LA, Sameshima K, Takahashi DY (2008) Generalized partial directed coherence. In: 2007 15th international conference on digital signal processing. Wiley, Cardiff, pp 163–166. https://doi.org/10.1109/ICDSP.2007.4288544
Barbey AK (2018) Network neuroscience theory of human intelligence. Trends Cogn Sci 22:8–20. https://doi.org/10.1016/j.tics.2017.10.001
Barzegaran E, Knyazeva MG (2017) Functional connectivity analysis in EEG source space: the choice of method. PLoS ONE 12:e0181105. https://doi.org/10.1371/journal.pone.0181105
Betzel RF, Avena-Koenigsberger A, Goñi J et al (2016) Generative models of the human connectome. Neuroimage 124:1054–1064. https://doi.org/10.1016/j.neuroimage.2015.09.041
Biazoli CE, Sturzbecher M, White TP, Dos Santos Onias HH, Andrade KC, de Araujo DB, Sato JR (2013) Application of partial directed coherence to the analysis of resting-state EEG-fMRI data. Brain Connect 3:563–568. https://doi.org/10.1089/brain.2012.0135
Bin Yoo H, La Concha EOd, de Ridder D, Pickut BA, Vanneste S (2018) The functional alterations in top-down attention streams of Parkinson’s disease measured by EEG. Sci Rep 8:10609. https://doi.org/10.1038/s41598-018-29036-y
Blank SC, Scott SK, Murphy K, Warburton E, Wise RJS (2002) Speech production: Wernicke, Broca and beyond. Brain 125:1829–1838. https://doi.org/10.1093/brain/awf191
Blinowska KJ, Rakowski F, Kaminski M, de Vico Fallani F, Del Percio C, Lizio R, Babiloni C (2017) Functional and effective brain connectivity for discrimination between Alzheimer’s patients and healthy individuals: a study on resting state EEG rhythms. Clin Neurophysiol 128:667–680. https://doi.org/10.1016/j.clinph.2016.10.002
Boccatetti S, Latora V, Moreno Y, Chavez M, Hwang D (2006) Complex networks: structure and dynamics. Phy Rep 424:175–308. https://doi.org/10.1016/j.physrep.2005.10.009
Bomela W, Wang S, Chou C-A, Li J-S (2020) Real-time inference and detection of disruptive EEG networks for epileptic seizures. Sci Rep 10:8653. https://doi.org/10.1038/s41598-020-65401-6
Bönstrup M, Schulz R, Feldheim J, Hummel FC, Gerloff C (2016) Dynamic causal modelling of EEG and fMRI to characterize network architectures in a simple motor task. Neuroimage 124:498–508. https://doi.org/10.1016/j.neuroimage.2015.08.052
Bönstrup M, Schulz R, Schön G, Cheng B, Feldheim J, Thomalla G, Gerloff C (2018) Parietofrontal network upregulation after motor stroke. Neuroimage Clin 18:720–729. https://doi.org/10.1016/j.nicl.2018.03.006
Bore JC, Li P, Harmah DJ, Li F, Yao D, Xu P (2020) Directed EEG neural network analysis by LAPPS (p≤1) penalized sparse Granger approach. Neural Netw 124:213–222. https://doi.org/10.1016/j.neunet.2020.01.022
Bosl W, Tierney A, Tager-Flusberg H, Nelson C (2011) EEG complexity as a biomarker for autism spectrum disorder risk. BMC Med 9:18. https://doi.org/10.1186/1741-7015-9-18
Braga RM, Buckner RL (2017) Parallel interdigitated distributed networks within the individual estimated by intrinsic functional connectivity. Neuron 95:457-471.e5. https://doi.org/10.1016/j.neuron.2017.06.038
Brem A-K, Ran K, Pascual-Leone A (2013) Learning and memory. Handb Clin Neurol 116:693–737. https://doi.org/10.1016/B978-0-444-53497-2.00055-3
Briels CT, Schoonhoven DN, Stam CJ, de Waal H, Scheltens P, Gouw AA (2020) Reproducibility of EEG functional connectivity in Alzheimer’s disease. Alzheimers Res Ther 12:68. https://doi.org/10.1186/s13195-020-00632-3
Brislin SJ, Patrick CJ (2019) Callousness and affective face processing: clarifying the neural basis of behavioral-recognition deficits through use of brain ERPs. Clin Psychol Sci 7:1389–1402. https://doi.org/10.1177/2167702619856342
Brookes MJ, Hale JR, Zumer JM, Stevenson CM, Francis ST, Barnes GR, Owen JP, Morris PG, Nagarajan SS (2011) Measuring functional connectivity using MEG: methodology and comparison with fcMRI. Neuroimage 56:1082–1104. https://doi.org/10.1016/j.neuroimage.2011.02.054
Brosch T, Scherer KR, Grandjean D, Sander D (2013) The impact of emotion on perception, attention, memory, and decision-making. Swiss Med Wkly 143:w13786. https://doi.org/10.4414/smw.2013.13786
Brunner C, Billinger M, Seeber M, Mullen TR, Makeig S (2016) Volume conduction influences scalp-based connectivity estimates. Front Comput Neurosci 10:121. https://doi.org/10.3389/fncom.2016.00121
Buckner RL, Sepulcre J, Talukdar T, Krienen FM, Liu H, Hedden T, Andrews-Hanna JR, Sperling RA, Johnson KA (2009) Cortical hubs revealed by intrinsic functional connectivity: mapping, assessment of stability, and relation to Alzheimer’s disease. J Neurosci 29:1860–1873. https://doi.org/10.1523/JNEUROSCI.5062-08.2009
Cai Y, Li J, Chen Y, Chen W, Dang C, Zhao F, Li W, Chen G, Chen S, Liang M, Zheng Y (2019) Inhibition of brain area and functional connectivity in idiopathic sudden sensorineural hearing loss with tinnitus, based on resting-state EEG. Front Neurosci 13:851. https://doi.org/10.3389/fnins.2019.00851
Caravaglios G, Muscoso EG, Di Maria G, Costanzo E (2015) Patients with mild cognitive impairment have an abnormal upper-alpha event-related desynchronization/synchronization (ERD/ERS) during a task of temporal attention. J Neural Transm (Vienna) 122:441–453. https://doi.org/10.1007/s00702-014-1262-7
Cary RP, Ray S, Grayson DS, Painter J, Carpenter S, Maron L, Sporns O, Stevens AA, Nigg JT, Fair DA (2017) Network structure among brain systems in adult ADHD is uniquely modified by stimulant administration. Cereb Cortex 27:3970–3979. https://doi.org/10.1093/cercor/bhw209
Catana C, Drzezga A, Heiss W-D, Rosen BR (2012) PET/MRI for neurologic applications. J Nucl Med 53:1916–1925. https://doi.org/10.2967/jnumed.112.105346
Cecotti H, Gräser A (2011) Convolutional neural networks for P300 detection with application to brain-computer interfaces. IEEE Trans Pattern Anal Mach Intell 33:433–445. https://doi.org/10.1109/TPAMI.2010.125
Chai WJ, Abd Hamid AI, Abdullah JM (2018) Working memory from the psychological and neurosciences perspectives: a review. Front Psychol 9:401. https://doi.org/10.3389/fpsyg.2018.00401
Chai MT, Amin HU, Izhar LI, Saad MNM, Abdul Rahman M, Malik AS, Tang TB (2019) Exploring EEG effective connectivity network in estimating influence of color on emotion and memory. Front Neuroinform 13:66. https://doi.org/10.3389/fninf.2019.00066
Chance FS, Aimone JB, Musuvathy SS, Smith MR, Vineyard CM, Wang F (2020) Crossing the cleft: communication challenges between neuroscience and artificial intelligence. Front Comput Neurosci 14:39. https://doi.org/10.3389/fncom.2020.00039
Chandani M (2017) Classification of EEG physiological signal for the detection of epileptic seizure by using DWT feature extraction and neural network. Int J Neurol Phys Ther 3:38–43. https://doi.org/10.11648/j.ijnpt.20170305.11
Chen G (2017) Pinning control and controllability of complex dynamical networks. Int J Autom Comput 14:1–9. https://doi.org/10.1007/s11633-016-1052-9
Chen J, Wang H, Hua C, Wang Q, Liu C (2018) Graph analysis of functional brain network topology using minimum spanning tree in driver drowsiness. Cogn Neurodyn 12:569–581. https://doi.org/10.1007/s11571-018-9495-z
Chu CJ, Kramer MA, Pathmanathan J, Bianchi MT, Westover MB, Wizon L, Cash SS (2012) Emergence of stable functional networks in long-term human electroencephalography. J Neurosci 32:2703–2713. https://doi.org/10.1523/JNEUROSCI.5669-11.2012
Cohen JR, D’Esposito M (2016) The segregation and integration of distinct brain networks and their relationship to cognition. J Neurosci 36:12083–12094. https://doi.org/10.1523/JNEUROSCI.2965-15.2016
Contreras JA, Goñi J, Risacher SL, Sporns O, Saykin AJ (2015) The structural and functional connectome and prediction of risk for cognitive impairment in older adults. Curr Behav Neurosci Rep 2:234–245. https://doi.org/10.1007/s40473-015-0056-z
Contreras JA, Goñi J, Risacher SL, Amico E, Yoder K, Dzemidzic M, West JD, McDonald BC, Farlow MR, Sporns O, Saykin AJ (2017) Cognitive complaints in older adults at risk for Alzheimer’s disease are associated with altered resting-state networks. Alzheimers Dement (Amst) 6:40–49. https://doi.org/10.1016/j.dadm.2016.12.004
Contreras JA, Avena-Koenigsberger A, Risacher SL et al (2019) Resting state network modularity along the prodromal late onset Alzheimer’s disease continuum. Neuroimage Clin 22:101687. https://doi.org/10.1016/j.nicl.2019.101687
Cooray GK, Sengupta B, Douglas PK, Friston K (2016) Dynamic causal modelling of electrographic seizure activity using Bayesian belief updating. Neuroimage 125:1142–1154. https://doi.org/10.1016/j.neuroimage.2015.07.063
Dai M, Li Y, Gan S, Du F (2019) The reliability of estimating visual working memory capacity. Sci Rep 9:1155. https://doi.org/10.1038/s41598-019-39044-1
Daly I, Williams D, Hwang F, Kirke A, Miranda ER, Nasuto SJ (2019) Electroencephalography reflects the activity of sub-cortical brain regions during approach-withdrawal behaviour while listening to music. Sci Rep 9:9415. https://doi.org/10.1038/s41598-019-45105-2
Damborská A, Tomescu MI, Honzírková E, Barteček R, Hořínková J, Fedorová S, Ondruš Š, Michel CM (2019) EEG resting-state large-scale brain network dynamics are related to depressive symptoms. Front Psychiatry 10:548. https://doi.org/10.3389/fpsyt.2019.00548
David O, Kiebel SJ, Harrison LM, Mattout J, Kilner JM, Friston KJ (2006) Dynamic causal modeling of evoked responses in EEG and MEG. Neuroimage 30:1255–1272. https://doi.org/10.1016/j.neuroimage.2005.10.045
de Oliveira RMW (2020) Neuroplasticity. J Chem Neuroanat 108:101822. https://doi.org/10.1016/j.jchemneu.2020.101822
de Pasquale F, Della Penna S, Sporns O, Romani GL, Corbetta M (2016) A dynamic core network and global efficiency in the resting human brain. Cereb Cortex 26:4015–4033. https://doi.org/10.1093/cercor/bhv185
de Vico Fallani F, Astolfi L, Cincotti F, Mattia D, Tocci A, Salinari S, Marciani MG, Witte H, Colosimo A, Babiloni F (2008) Brain network analysis from high-resolution EEG recordings by the application of theoretical graph indexes. IEEE Trans Neural Syst Rehabil Eng 16:442–452. https://doi.org/10.1109/TNSRE.2008.2006196
Delorme A, Makeig S (2004) EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis. J Neurosci Methods 134:9–21. https://doi.org/10.1016/j.jneumeth.2003.10.009
DiCarlo JJ, Zoccolan D, Rust NC (2012) How does the brain solve visual object recognition? Neuron 73:415–434. https://doi.org/10.1016/j.neuron.2012.01.010
Díez Á, Ranlund S, Pinotsis D, Calafato S, Shaikh M, Hall M-H, Walshe M, Nevado Á, Friston KJ, Adams RA, Bramon E (2017) Abnormal frontoparietal synaptic gain mediating the P300 in patients with psychotic disorder and their unaffected relatives. Hum Brain Mapp 38:3262–3276. https://doi.org/10.1002/hbm.23588
Dimitriadis SI, Laskaris NA, Micheloyannis S (2015) Transition dynamics of EEG-based network microstates during mental arithmetic and resting wakefulness reflects task-related modulations and developmental changes. Cogn Neurodyn 9:371–387
Du Y, Fu Z, Calhoun VD (2018) Classification and prediction of brain disorders using functional connectivity: promising but challenging. Front Neurosci 12:525. https://doi.org/10.3389/fnins.2018.00525
Dubois B, Hampel H, Feldman HH et al (2016) Preclinical Alzheimer’s disease: definition, natural history, and diagnostic criteria. Alzheimers Dement 12:292–323. https://doi.org/10.1016/j.jalz.2016.02.002
Duc NT, Lee B (2020) Decoding brain dynamics in speech perception based on EEG microstates decomposed by multivariate Gaussian hidden Markov model. IEEE Access 8:146770–146784. https://doi.org/10.1109/ACCESS.2020.3015292
Dukic S, Iyer PM, Mohr K, Hardiman O, Lalor EC, Nasseroleslami B (2017) Estimation of coherence using the median is robust against EEG artefacts. Annu Int Conf IEEE Eng Med Biol Soc 2017:3949–3952. https://doi.org/10.1109/EMBC.2017.8037720
Dukic S, McMackin R, Buxo T et al (2019) Patterned functional network disruption in amyotrophic lateral sclerosis. Hum Brain Mapp 40:4827–4842. https://doi.org/10.1002/hbm.24740
Durstewitz D, Huys QJM, Koppe G (2020) Psychiatric illnesses as disorders of network dynamics. Biol Psychiatry Cogn Neurosci Neuroimaging S2451–9022(20):30019–30027. https://doi.org/10.1016/j.bpsc.2020.01.001
Eriksson J, Vogel EK, Lansner A, Bergström F, Nyberg L (2015) Neurocognitive architecture of working memory. Neuron 88:33–46. https://doi.org/10.1016/j.neuron.2015.09.020
Fahimi Hnazaee M, Khachatryan E, van Hulle MM (2018) Semantic features reveal different networks during word processing: an EEG source Llocalization study. Front Hum Neurosci 12:503. https://doi.org/10.3389/fnhum.2018.00503
Fan J, Fang L, Wu J, Guo Y, Dai Q (2020) From brain science to artificial intelligence. Engineering 6:248–252. https://doi.org/10.1016/j.eng.2019.11.012
Farahibozorg S (Feb/2018) Uncovering dynamic semantic network in the brain using novel approached for EEG/MEG connectome reconstruction. Dissertation, Selwyn College
Fastenrath M, Friston KJ, Kiebel SJ (2009) Dynamical causal modelling for M/EEG: spatial and temporal symmetry constraints. Neuroimage 44:154–163. https://doi.org/10.1016/j.neuroimage.2008.07.041
Fogelson N, Litvak V, Peled A, Fernandez-del-Olmo M, Friston K (2014) The functional anatomy of schizophrenia: a dynamic causal modeling study of predictive coding. Schizophr Res 158:204–212. https://doi.org/10.1016/j.schres.2014.06.011
Fornito A, Zalesky A, Breakspear M (2015) The connectomics of brain disorders. Nat Rev Neurosci 16:159–172. https://doi.org/10.1038/nrn3901
Franciotti R, Falasca NW, Arnaldi D, Famà F, Babiloni C, Onofrj M, Nobili FM, Bonanni L (2019) Cortical network topology in prodromal and mild dementia due to Alzheimer’s disease: graph theory applied to resting state EEG. Brain Topogr 32:127–141. https://doi.org/10.1007/s10548-018-0674-3
Fraschini M, Demuru M, Hillebrand A, Cuccu L, Porcu S, Di Stefano F, Puligheddu M, Floris G, Borghero G, Marrosu F (2016) EEG functional network topology is associated with disability in patients with amyotrophic lateral sclerosis. Sci Rep 6:38653. https://doi.org/10.1038/srep38653
Friston KJ (2009) Modalities, modes, and models in functional neuroimaging. Science 326:399–403. https://doi.org/10.1126/science.1174521
Friston KJ (2011) Functional and effective connectivity: a review. Brain Connect 1:13–36. https://doi.org/10.1089/brain.2011.0008
Friston KJ, Price CJ (2001) Dynamic representations and generative models of brain function. Brain Res Bull 54:275–285. https://doi.org/10.1016/S0361-9230(00)00436-6
Friston KJ, Harrison L, Penny W (2003) Dynamic causal modelling. Neuroimage 19:1273–1302. https://doi.org/10.1016/S1053-8119(03)00202-7
Friston K, Zeidman P, Litvak V (2015) Empirical Bayes for DCM: a group inversion scheme. Front Syst Neurosci 9:164. https://doi.org/10.3389/fnsys.2015.00164
Friston K, Brown HR, Siemerkus J, Stephan KE (2016a) The dysconnection hypothesis. Schizophr Res 176:83–94. https://doi.org/10.1016/j.schres.2016.07.014
Friston KJ, Litvak V, Oswal A, Razi A, Stephan KE, van Wijk BCM, Ziegler G, Zeidman P (2016b) Bayesian model reduction and empirical Bayes for group (DCM) studies. Neuroimage 128:413–431. https://doi.org/10.1016/j.neuroimage.2015.11.015
Fujii M, Maesawa S, Ishiai S, Iwami K, Futamura M, Saito K (2016) Neural basis of language: an overview of an evolving model. Neurol Med Chir (tokyo) 56:379–386. https://doi.org/10.2176/nmc.ra.2016-0014
Gallen CL, Turner GR, Adnan A, D’Esposito M (2016) Reconfiguration of brain network architecture to support executive control in aging. Neurobiol Aging 44:42–52. https://doi.org/10.1016/j.neurobiolaging.2016.04.003
Gao L-L, Wu T (2016) The study of brain functional connectivity in Parkinson’s disease. Transl Neurodegener 5:18. https://doi.org/10.1186/s40035-016-0066-0
Gao Z, Dang W, Wang X, Hong X, Hou L, Ma K, Perc M (2020) Complex networks and deep learning for EEG signal analysis. Cogn Neurodyn 2020:1. https://doi.org/10.1007/s11571-020-09626-1
Gaubert S, Raimondo F, Houot M, Corsi M-C, Naccache L, Diego Sitt J, Hermann B, Oudiette D, Gagliardi G, Habert M-O, Dubois B, de Vico Fallani F, Bakardjian H, Epelbaum S (2019) EEG evidence of compensatory mechanisms in preclinical Alzheimer’s disease. Brain 142:2096–2112. https://doi.org/10.1093/brain/awz150
Gazzaniga MS, Ivry RB, Mangun GR (2019) Cognitive neuroscience: the biology of the mind. W.W. Norton & Company, New York
Ghaderi AH, Nazari MA, Shahrokhi H, Darooneh AH (2017) Functional brain connectivity differences between different ADHD presentations: impaired functional segregation in ADHD-combined presentation but not in ADHD-inattentive presentation. Basic Clin Neurosci 8:267–278. https://doi.org/10.18869/nirp.bcn.8.4.267
Ghumare EG, Schrooten M, Vandenberghe R, Dupont P (2018) A time-varying connectivity analysis from distributed EEG sources: a simulation study. Brain Topogr 31:721–737. https://doi.org/10.1007/s10548-018-0621-3
Giahi Saravani A, Forseth KJ, Tandon N, Pitkow X (2019) Dynamic brain interactions during picture naming. eNeuro. https://doi.org/10.1523/ENEURO.0472-18.2019
Gilmore JH, Knickmeyer RC, Gao W (2018) Imaging structural and functional brain development in early childhood. Nat Rev Neurosci 19:123–137. https://doi.org/10.1038/nrn.2018.1
Granger CWJ (1969) Investigating causal relations by econometric models and cross-spectral methods. Econometrica 37:424. https://doi.org/10.2307/1912791
Gratton C, Laumann TO, Nielsen AN, Greene DJ, Gordon EM, Gilmore AW, Nelson SM, Coalson RS, Snyder AZ, Schlaggar BL, Dosenbach NUF, Petersen SE (2018) Functional brain networks are dominated by stable group and individual factors, not cognitive or daily variation. Neuron 98:439-452.e5. https://doi.org/10.1016/j.neuron.2018.03.035
Gray JR, Braver TS, Raichle ME (2002) Integration of emotion and cognition in the lateral prefrontal cortex. Proc Natl Acad Sci USA 99:4115–4120. https://doi.org/10.1073/pnas.062381899
Griffis JC, Metcalf NV, Corbetta M, Shulman GL (2019) Structural disconnections explain brain network dysfunction after stroke. Cell Rep 28:2527-2540.e9. https://doi.org/10.1016/j.celrep.2019.07.100
Gu S, Pasqualetti F, Cieslak M, Telesford QK, Yu AB, Kahn AE, Medaglia JD, Vettel JM, Miller MB, Grafton ST, Bassett DS (2015) Controllability of structural brain networks. Nat Commun 6:8414. https://doi.org/10.1038/ncomms9414
Gu Y, Liang Z, Hagihira S (2019) Use of multiple EEG features and artificial neural network to monitor the depth of Anesthesia. Sensors (Basel). https://doi.org/10.3390/s19112499
Guo D, Guo F, Zhang Y, Li F, Xia Y, Xu P, Yao D (2018) Periodic visual stimulation induces resting-state brain network reconfiguration. Front Comput Neurosci 12:21. https://doi.org/10.3389/fncom.2018.00021
Harmah DJ, Li C, Li F, Liao Y, Wang J, Ayedh WMA, Bore JC, Yao D, Dong W, Xu P (2019) Measuring the non-linear directed information flow in Schizophrenia by multivariate transfer entropy. Front Comput Neurosci 13:85. https://doi.org/10.3389/fncom.2019.00085
Hassabis D, Kumaran D, Summerfield C, Botvinick M (2017) Neuroscience-inspired artificial intelligence. Neuron 95:245–258. https://doi.org/10.1016/j.neuron.2017.06.011
Hassan M, Benquet P, Biraben A, Berrou C, Dufor O, Wendling F (2015) Dynamic reorganization of functional brain networks during picture naming. Cortex 73:276–288. https://doi.org/10.1016/j.cortex.2015.08.019
Hassan M, Chaton L, Benquet P, Delval A, Leroy C, Plomhause L, Moonen AJH, Duits AA, Leentjens AFG, van Kranen-Mastenbroek V, Defebvre L, Derambure P, Wendling F, Dujardin K (2017) Functional connectivity disruptions correlate with cognitive phenotypes in Parkinson’s disease. Neuroimage Clin 14:591–601. https://doi.org/10.1016/j.nicl.2017.03.002
Hata M, Kazui H, Tanaka T, Ishii R, Canuet L, Pascual-Marqui RD, Aoki Y, Ikeda S, Kanemoto H, Yoshiyama K, Iwase M, Takeda M (2016) Functional connectivity assessed by resting state EEG correlates with cognitive decline of Alzheimer’s disease: an eLORETA study. Clin Neurophysiol 127:1269–1278. https://doi.org/10.1016/j.clinph.2015.10.030
He Y, Lim S, Fortunato S, Sporns O, Zhang L, Qiu J, Xie P, Zuo X-N (2018) Reconfiguration of cortical networks in MDD uncovered by multiscale community detection with fMRI. Cereb Cortex 28:1383–1395. https://doi.org/10.1093/cercor/bhx335
Hearne LJ, Cocchi L, Zalesky A, Mattingley JB (2017) Reconfiguration of brain network architectures between resting-state and complexity-dependent cognitive reasoning. J Neurosci 37:8399–8411. https://doi.org/10.1523/JNEUROSCI.0485-17.2017
Hilger K, Fukushima M, Sporns O, Fiebach CJ (2020) Temporal stability of functional brain modules associated with human intelligence. Hum Brain Mapp 41:362–372. https://doi.org/10.1002/hbm.24807
Hilgetag CC, Goulas A (2020) “Hierarchy” in the organization of brain networks. Philos Trans R Soc Lond B Biol Sci 375:20190319. https://doi.org/10.1098/rstb.2019.0319
Hordacre B, Moezzi B, Ridding MC (2018) Neuroplasticity and network connectivity of the motor cortex following stroke: a transcranial direct current stimulation study. Hum Brain Mapp 39:3326–3339. https://doi.org/10.1002/hbm.24079
Hu S, Yao D, Valdes-Sosa PA (2018) Unified Bayesian estimator of EEG reference at infinity: rREST (regularized reference electrode standardization technique). Front Neurosci 12:297. https://doi.org/10.3389/fnins.2018.00297
Huang D, Ren A, Shang J, Lei Q, Zhang Y, Yin Z, Li J, von Deneen KM, Huang L (2016) Combining partial directed coherence and graph theory to analyse effective brain networks of different mental tasks. Front Hum Neurosci 10:235. https://doi.org/10.3389/fnhum.2016.00235
Hunyadi B, Woolrich MW, Quinn AJ, Vidaurre D, de Vos M (2019) A dynamic system of brain networks revealed by fast transient EEG fluctuations and their fMRI correlates. Neuroimage 185:72–82. https://doi.org/10.1016/j.neuroimage.2018.09.082
Iyer PM, Egan C, Pinto-Grau M, Burke T, Elamin M, Nasseroleslami B, Pender N, Lalor EC, Hardiman O (2015) Functional connectivity changes in resting-state EEG as potential biomarker for amyotrophic lateral sclerosis. PLoS ONE 10:e0128682. https://doi.org/10.1371/journal.pone.0128682
Jalili M (2016) Functional brain entworks: does the choice of dependency estimator and binarization method matter? Sci Rep 6:29780. https://doi.org/10.1038/srep29780
Jalili M, Knyazeva MG (2011) Constructing brain functional networks from EEG: partial and unpartial correlations. J Integr Neurosci 10:213–232. https://doi.org/10.1142/S0219635211002725
Jatoi MA, Kamel N, Lopez JD, Faye I, Malik AS (2016) MSP based source localization using EEG signals, pp 1–5. https://doi.org/10.1109/ICIAS.2016.7824074
Ji C, Maurits NM, Roerdink JBTM (2018) Data-driven visualization of multichannel EEG coherence networks based on community structure analysis. Appl Netw Sci 3:41. https://doi.org/10.1007/s41109-018-0096-x
Jirsa VK, Sporns O, Breakspear M, Deco G, McIntosh AR (2010) Towards the virtual brain: network modeling of the intact and the damaged brain. Arch Ital Biol 148:189–205. https://doi.org/10.4449/aib.v148i3.1223
Joudaki A, Salehi N, Jalili M, Knyazeva MG (2012) EEG-based functional brain networks: does the network size matter? PLoS ONE 7:e35673. https://doi.org/10.1371/journal.pone.0035673
Joyce KE, Laurienti PJ, Burdette JH, Hayasaka S (2010) A new measure of centrality for brain networks. PLoS ONE 5:e12200. https://doi.org/10.1371/journal.pone.0012200
Kabbara A, Khalil M, El-Falou W, Eid H, Hassan M (2016) Functional brain connectivity as a new feature for P300 speller. PLoS ONE 11:e0146282. https://doi.org/10.1371/journal.pone.0146282
Kaminski M, Blinowska KJ (2014) Directed transfer function is not influenced by volume conduction-inexpedient pre-processing should be avoided. Front Comput Neurosci 8:61. https://doi.org/10.3389/fncom.2014.00061
Kao E, Gadepally V, Hurley M, Jones M, Kepner J, Mohindra S, Monticciolo P, Reuther A, Samsi S, Song W, Staheli D, Smith S (eds) (2017) Streaming graph challenge: stochastic block partition. In: 2017 IEEE high performance extreme computing conference (HPEC) Waltham USA 2017, pp 1–12. https://doi.org/10.1109/HPEC.2017.8091040
Karimi-Rouzbahani H, Bagheri N, Ebrahimpour R (2017) Invariant object recognition is a personalized selection of invariant features in humans, not simply explained by hierarchical feed-forward vision models. Sci Rep 7:14402. https://doi.org/10.1038/s41598-017-13756-8
Karlsgodt KH, Sun D, Cannon TD (2010) Structural and functional brain abnormalities in Schizophrenia. Curr Dir Psychol Sci 19:226–231. https://doi.org/10.1177/0963721410377601
Kepner J, Alford S, Gadepally V, Jones M, Milechin L, Robinett R, Samsi S (eds) (2019) Sparse deep neural network graph challenge. In: 2019 IEEE high performance extreme computing conference (HPEC) Waltham USA 2019, pp 1–7. https://doi.org/10.1109/HPEC.2019.8916336
Kim YK, Park E, Lee A, Im C-H, Kim Y-H (2018) Changes in network connectivity during motor imagery and execution. PLoS ONE 13:e0190715. https://doi.org/10.1371/journal.pone.0190715
Kinney-Lang E, Yoong M, Hunter M, Kamath Tallur K, Shetty J, McLellan A, Fm Chin R, Escudero J (2019) Analysis of EEG networks and their correlation with cognitive impairment in preschool children with epilepsy. Epilepsy Behav 90:45–56. https://doi.org/10.1016/j.yebeh.2018.11.011
La Foresta F, Morabito FC, Marino S, Dattola S (2019) High-density EEG signal processing based on active-source reconstruction for brain network analysis in Alzheimer’s disease. Electronics 8:1031. https://doi.org/10.3390/electronics8091031
Lai M, Demuru M, Hillebrand A, Fraschini M (2018) A comparison between scalp- and source-reconstructed EEG networks. Sci Rep 8:12269. https://doi.org/10.1038/s41598-018-30869-w
Lan L, Li J, Chen Y, Chen W, Li W, Zhao F, Chen G, Liu J, Chen Y, Li Y, Wang C-D, Zheng Y, Cai Y (2020) Alterations of brain activity and functional connectivity in transition from acute to chronic tinnitus. Hum Brain Mapp 42(2):485–494. https://doi.org/10.1002/hbm.25238
Le Cam S, Ranta R, Caune V, Korats G, Koessler L, Maillard L, Louis-Dorr V (2017) SEEG dipole source localization based on an empirical Bayesian approach taking into account forward model uncertainties. Neuroimage 153:1–15. https://doi.org/10.1016/j.neuroimage.2017.03.030
Lee VK, Harris LT (2013) How social cognition can inform social decision making. Front Neurosci 7:259. https://doi.org/10.3389/fnins.2013.00259
Lehnertz K, Geier C, Rings T, Stahn K (2017) Capturing time-varying brain dynamics. EPJ Nonlinear Biomed Phys 5:2. https://doi.org/10.1051/epjnbp/2017001
Li W, Li Y, Zhu W, Chen X (2014) Changes in brain functional network connectivity after stroke. Neural Regen Res 9:51–60. https://doi.org/10.4103/1673-5374.125330
Li F, Liu T, Wang F, Li H, Gong D, Zhang R, Jiang Y, Tian Y, Guo D, Yao D, Xu P (2015a) Relationships between the resting-state network and the P3: evidence from a scalp EEG study. Sci Rep 5:15129. https://doi.org/10.1038/srep15129
Li F, Tian Y, Zhang Y, Qiu K, Tian C, Jing W, Liu T, Xia Y, Guo D, Yao D, Xu P (2015b) The enhanced information flow from visual cortex to frontal area facilitates SSVEP response: evidence from model-driven and data-driven causality analysis. Sci Rep 5:14765. https://doi.org/10.1038/srep14765
Li F, Chen B, Li H, Zhang T, Wang F, Jiang Y, Li P, Ma T, Zhang R, Tian Y, Liu T, Guo D, Yao D, Xu P (2016) The time-varying networks in P300: a task-evoked EEG study. IEEE Trans Neural Syst Rehabil Eng 24:725–733. https://doi.org/10.1109/TNSRE.2016.2523678
Li P, Huang X, Li F, Wang X, Zhou W, Liu H, Ma T, Zhang T, Guo D, Yao D, Xu P (2017) Robust Granger analysis in Lp norm space for directed EEG network analysis. IEEE Trans Neural Syst Rehabil Eng 25:1959–1969. https://doi.org/10.1109/TNSRE.2017.2711264
Li F, Yi C, Jiang Y, Liao Y, Si Y, Dai J, Yao D, Zhang Y, Xu P (2018a) Different contexts in the Oddball paradigm induce distinct brain networks in generating the P300. Front Hum Neurosci 12:520. https://doi.org/10.3389/fnhum.2018.00520
Li J, Zhang Z, He H (2018b) Hierarchical convolutional neural networks for EEG-based emotion recognition. Cogn Comput 10:368–380. https://doi.org/10.1007/s12559-017-9533-x
Li P, Huang X, Zhu X, Liu H, Zhou W, Yao D, Xu P (2018c) Lp (p ≤ 1) norm partial directed coherence for directed network analysis of scalp EEGs. Brain Topogr 31:738–752. https://doi.org/10.1007/s10548-018-0624-0
Li F, Yi C, Jiang Y, Liao Y, Si Y, Yao D, Zhang Y, Xu P (2018d) The construction of large-scale cortical networks for P300 from scalp EEG. IEEE Access 6:68498–68506. https://doi.org/10.1109/ACCESS.2018.2879487
Li F, Wang J, Jiang Y, Si Y, Peng W, Song L, Jiang Y, Zhang Y, Dong W, Yao D, Xu P (2018e) Top-down disconnectivity in Schizophrenia during P300 tasks. Front Comput Neurosci 12:33. https://doi.org/10.3389/fncom.2018.00033
Li F, Yi C, Song L, Jiang Y, Peng W, Si Y, Zhang T, Zhang R, Yao D, Zhang Y, Xu P (2019a) Brain network reconfiguration during motor imagery revealed by a large-scale network analysis of Scalp EEG. Brain Topogr 32:304–314. https://doi.org/10.1007/s10548-018-0688-x
Li F, Wang J, Liao Y, Yi C, Jiang Y, Si Y, Peng W, Yao D, Zhang Y, Dong W, Xu P (2019b) Differentiation of schizophrenia by combining the spatial EEG brain network patterns of rest and task P300. IEEE Trans Neural Syst Rehabil Eng 27:594–602. https://doi.org/10.1109/TNSRE.2019.2900725
Li P, Liu H, Si Y, Li C, Li F, Zhu X, Huang X, Zeng Y, Yao D, Zhang Y, Xu P (2019c) EEG based emotion recognition by combining functional connectivity network and local activations. IEEE Trans Biomed Eng 66(10):2869–2881. https://doi.org/10.1109/TBME.2019.2897651
Li F, Peng W, Jiang Y, Song L, Liao Y, Yi C, Zhang L, Si Y, Zhang T, Wang F, Zhang R, Tian Y, Zhang Y, Yao D, Xu P (2019d) The dynamic brain networks of motor imagery: time-varying causality analysis of scalp EEG. Int J Neural Syst 29:1850016. https://doi.org/10.1142/S0129065718500168
Li F, Liang Y, Zhang L, Yi C, Liao Y, Jiang Y, Si Y, Zhang Y, Yao D, Yu L, Xu P (2019e) Transition of brain networks from an interictal to a preictal state preceding a seizure revealed by scalp EEG network analysis. Cogn Neurodyn 13:175–181. https://doi.org/10.1007/s11571-018-09517-6
Li Z, Zhang L, Zhang F, Gu R, Peng W, Hu L (2020a) Demystifying signal processing techniques to extract resting-state EEG features for psychologists. Brain Sci Adv 6:189–209. https://doi.org/10.26599/BSA.2020.9050019
Li X, Mota B, Kondo T, Nasuto S, Hayashi Y (2020b) EEG dynamical network analysis method reveals the neural signature of visual-motor coordination. PLoS ONE 15:e0231767. https://doi.org/10.1371/journal.pone.0231767
Li F, Tao Q, Peng W, Zhang T, Si Y, Zhang Y, Yi C, Biswal B, Yao D, Xu P (2020c) Inter-subject P300 variability relates to the efficiency of brain networks reconfigured from resting- to task-state: evidence from a simultaneous event-related EEG-fMRI study. Neuroimage 205:116285. https://doi.org/10.1016/j.neuroimage.2019.116285
Li F, Cao Z, Xu P, Yi C, Liao Y, Jiang Y, Si Y, Song L, Zhang T, Yao D, Zhang Y (2020d) Reconfiguration of brain network between resting-state and P300 task. IEEE Trans Cogn Dev Syst. https://doi.org/10.1109/TCDS.2020.2965135
Liang X, Wang J, Yan C, Shu N, Xu K, Gong G, He Y (2012) Effects of different correlation metrics and preprocessing factors on small-world brain functional networks: a resting-state functional MRI study. PLoS ONE 7:e32766. https://doi.org/10.1371/journal.pone.0032766
Liang S, Choi K-S, Qin J, Wang Q, Pang W-M, Heng P-A (2016) Discrimination of motor imagery tasks via information flow pattern of brain connectivity. Technol Health Care 24(Suppl 2):S795-801. https://doi.org/10.3233/THC-161212
Lin N, Yang X, Li J, Wang S, Hua H, Ma Y, Li X (2018) Neural correlates of three cognitive processes involved in theory of mind and discourse comprehension. Cogn Affect Behav Neurosci 18:273–283. https://doi.org/10.3758/s13415-018-0568-6
Lindquist KA, Wager TD, Kober H, Bliss-Moreau E, Barrett LF (2012) The brain basis of emotion: a meta-analytic review. Behav Brain Sci 35:121–143. https://doi.org/10.1017/S0140525X11000446
Litvak V, Garrido M, Zeidman P, Friston K (2015) Empirical Bayes for group (DCM) studies: a reproducibility study. Front Hum Neurosci 9:670. https://doi.org/10.3389/fnhum.2015.00670
Liu H, Zhang P (2018) Phase synchronization dynamics of neural network during seizures. Comput Math Methods Med 2018:1354915. https://doi.org/10.1155/2018/1354915
Liu J, Li M, Pan Y, Lan W, Zheng R, Wu F-X, Wang J (2017a) Complex brain network analysis and its applications to brain disorders: a survey. Complexity 2017:1–27. https://doi.org/10.1155/2017/8362741
Liu T, Li F, Jiang Y, Zhang T, Wang F, Gong D, Li P, Ma T, Qiu K, Li H, Yao D, Xu P (2017b) Cortical dynamic causality network for auditory-motor tasks. IEEE Trans Neural Syst Rehabil Eng 25:1. https://doi.org/10.1109/TNSRE.2016.2608359
Liu Q, Farahibozorg S, Porcaro C, Wenderoth N, Mantini D (2017c) Detecting large-scale networks in the human brain using high-density electroencephalography. Hum Brain Mapp 38:4631–4643. https://doi.org/10.1002/hbm.23688
Liu T, Zhang J, Dong X, Li Z, Shi X, Tong Y, Yang R, Wu J, Wang C, Yan T (2019) Occipital alpha connectivity during resting-state electroencephalography in patients with ultra-high risk for psychosis and Schizophrenia. Front Psychiatry 10:553. https://doi.org/10.3389/fpsyt.2019.00553
Lohmann G, Margulies DS, Horstmann A, Pleger B, Lepsien J, Goldhahn D, Schloegl H, Stumvoll M, Villringer A, Turner R (2010) Eigenvector centrality mapping for analyzing connectivity patterns in fMRI data of the human brain. PLoS ONE 5:e10232. https://doi.org/10.1371/journal.pone.0010232
López JD, Litvak V, Espinosa JJ, Friston K, Barnes GR (2014) Algorithmic procedures for Bayesian MEG/EEG source reconstruction in SPM. Neuroimage 84:476–487. https://doi.org/10.1016/j.neuroimage.2013.09.002
Lu H, Li Y, Chen M, Kim H, Serikawa S (2018) Brain intelligence: go beyond artificial intelligence. Mobile Netw Appl 23:368–375. https://doi.org/10.1007/s11036-017-0932-8
Lynn CW, Bassett DS (2019) The physics of brain network structure, function, and control. Nat Rev Phys 1:318–332. https://doi.org/10.1038/s42254-019-0040-8
Mackie M-A, van Dam NT, Fan J (2013) Cognitive control and attentional functions. Brain Cogn 82:301–312. https://doi.org/10.1016/j.bandc.2013.05.004
Maharathi B, Loeb JA, Patton J (2016) Estimation of resting state effective connectivity in epilepsy using direct-directed transfer function. Annu Int Conf IEEE Eng Med Biol Soc 2016:716–719. https://doi.org/10.1109/EMBC.2016.7590802
Mash LE, Linke AC, Olson LA, Fishman I, Liu TT, Müller R-A (2019) Transient states of network connectivity are atypical in autism: a dynamic functional connectivity study. Hum Brain Mapp 40:2377–2389. https://doi.org/10.1002/hbm.24529
Merzenich MM, van Vleet TM, Nahum M (2014) Brain plasticity-based therapeutics. Front Hum Neurosci 8:385. https://doi.org/10.3389/fnhum.2014.00385
Mesulam MM (1998) From sensation to cognition. Brain 121(Pt 6):1013–1052. https://doi.org/10.1093/brain/121.6.1013
Michel CM, Brunet D (2019) EEG Source imaging: a practical review of the analysis steps. Front Neurol 10:325. https://doi.org/10.3389/fneur.2019.00325
Michelini G, Jurgiel J, Bakolis I, Cheung CHM, Asherson P, Loo SK, Kuntsi J, Mohammad-Rezazadeh I (2019) Atypical functional connectivity in adolescents and adults with persistent and remitted ADHD during a cognitive control task. Transl Psychiatry 9:137. https://doi.org/10.1038/s41398-019-0469-7
Mohagheghian F, Makkiabadi B, Jalilvand H, Khajehpoor H, Samadzadehaghdam N, Eqlimi E, Deevband MR (2019) Computer-aided tinnitus detection based on brain network analysis of EEG functional connectivity. J Biomed Phys Eng 9:687–698. https://doi.org/10.31661/jbpe.v0i0.937
Mohr H, Wolfensteller U, Betzel RF, Mišić B, Sporns O, Richiardi J, Ruge H (2016) Integration and segregation of large-scale brain networks during short-term task automatization. Nat Commun 7:13217. https://doi.org/10.1038/ncomms13217
Moon S-E, Chen C-J, Hsieh C-J, Wang J-L, Lee J-S (2020) Emotional EEG classification using connectivity features and convolutional neural networks. Neural Netw 132:96–107. https://doi.org/10.1016/j.neunet.2020.08.009
Morenko A (2014) Brain processes during the perception of sensory signals in men with high and low output α-frequencies. Ann Neurosci 21:144–149. https://doi.org/10.5214/ans.0972.7531.210406
Moretti DV (2016) Electroencephalography-driven approach to prodromal Alzheimer’s disease diagnosis: from biomarker integration to network-level comprehension. Clin Interv Aging 11:897–912. https://doi.org/10.2147/CIA.S103313
Moser DA, Doucet GE, Ing A, Dima D, Schumann G, Bilder RM, Frangou S (2018) An integrated brain-behavior model for working memory. Mol Psychiatry 23:1974–1980. https://doi.org/10.1038/mp.2017.247
Muñoz-Gutiérrez PA, Giraldo E, Bueno-López M, Molinas M (2018) Localization of active brain sources from EEG signals using empirical mode decomposition: a comparative study. Front Integr Neurosci 12:55. https://doi.org/10.3389/fnint.2018.00055
Naim-Feil J, Rubinson M, Freche D, Grinshpoon A, Peled A, Moses E, Levit-Binnun N (2018) Altered brain network dynamics in Schizophrenia: a cognitive electroencephalography study. Biol Psychiatry Cogn Neurosci Neuroimaging 3:88–98. https://doi.org/10.1016/j.bpsc.2017.03.017
Nani A, Manuello J, Mancuso L, Liloia D, Costa T, Cauda F (2019) The neural correlates of consciousness and attention: two sister processes of the brain. Front Neurosci 13:1169. https://doi.org/10.3389/fnins.2019.01169
Nolte G, Bai O, Wheaton L, Mari Z, Vorbach S, Hallett M (2004) Identifying true brain interaction from EEG data using the imaginary part of coherency. Clin Neurophysiol 115:2292–2307. https://doi.org/10.1016/j.clinph.2004.04.029
Nowrangi MA, Lyketsos C, Rao V, Munro CA (2014) Systematic review of neuroimaging correlates of executive functioning: converging evidence from different clinical populations. J Neuropsychiatry Clin Neurosci 26:114–125. https://doi.org/10.1176/appi.neuropsych.12070176
Olejarczyk E, Marzetti L, Pizzella V, Zappasodi F (2017) Comparison of connectivity analyses for resting state EEG data. J Neural Eng 14:36017. https://doi.org/10.1088/1741-2552/aa6401
Oosugi N, Kitajo K, Hasegawa N, Nagasaka Y, Okanoya K, Fujii N (2017) A new method for quantifying the performance of EEG blind source separation algorithms by referencing a simultaneously recorded ECoG signal. Neural Netw 93:1–6. https://doi.org/10.1016/j.neunet.2017.01.005
O’Regan JK, Noë A (2001) A sensorimotor account of vision and visual consciousness. Behav Brain Sci 24:939–73. https://doi.org/10.1017/S0140525X01000115
O’Reilly C, Lewis JD, Elsabbagh M (2017) Is functional brain connectivity atypical in autism? A systematic review of EEG and MEG studies. PLoS ONE 12:e0175870. https://doi.org/10.1371/journal.pone.0175870
Ortolani O, Conti A, Di Filippo A, Adembri C, Moraldi E, Evangelisti A, Maggini M, Roberts SJ (2002) EEG signal processing in anaesthesia. Use of a neural network technique for monitoring depth of anaesthesia. Br J Anaesth 88:644–648. https://doi.org/10.1093/bja/88.5.644
Ouyang G, Zhou C (2020) Characterizing the brain’s dynamical response from scalp-level neural electrical signals: a review of methodology development. Cogn Neurodyn 14:731–742. https://doi.org/10.1007/s11571-020-09631-4
Paban V, Modolo J, Mheich A, Hassan M (2019) Psychological resilience correlates with EEG source-space brain network flexibility. Netw Neurosci 3:539–550. https://doi.org/10.1162/netn_a_00079
Pagnotta MF, Plomp G (2018) Time-varying MVAR algorithms for directed connectivity analysis: critical comparison in simulations and benchmark EEG data. PLoS ONE 13:e0198846. https://doi.org/10.1371/journal.pone.0198846
Papadopoulou M, Friston K, Marinazzo D (2019) Estimating directed connectivity from cortical recordings and reconstructed sources. Brain Topogr 32:741–752. https://doi.org/10.1007/s10548-015-0450-6
Parr T, Friston KJ (2018) The anatomy of inference: generative models and brain structure. Front Comput Neurosci 12:90. https://doi.org/10.3389/fncom.2018.00090
Pascucci D, Rubega M, Plomp G (2019) Modeling time-varying brain networks with a self-tuning optimized Kalman filter. PLoS Comput Biol. https://doi.org/10.1101/856179
Penny W, Iglesias-Fuster J, Quiroz YT, Lopera FJ, Bobes MA (2018) Dynamic causal dodeling of preclinical autosomal-dominant Alzheimer’s disease. J Alzheimers Dis 65:697–711. https://doi.org/10.3233/JAD-170405
Petersen SE, Sporns O (2015) Brain networks and cognitive architectures. Neuron 88:207–219. https://doi.org/10.1016/j.neuron.2015.09.027
Poil S-S, de Haan W, van der Flier WM, Mansvelder HD, Scheltens P, Linkenkaer-Hansen K (2013) Integrative EEG biomarkers predict progression to Alzheimer’s disease at the MCI stage. Front Aging Neurosci 5:58. https://doi.org/10.3389/fnagi.2013.00058
Privitera AJ (2020) Sensation and perception. In: Biswas-Diener R, Diener E (eds) Noba textbook series: PSYCHOLOGY. DEF Publisher, Champaign
Rabinovich MI, Zaks MA, Varona P (2020) Sequential dynamics of complex networks in mind: consciousness and creativity. Phys Rep 883:1–32. https://doi.org/10.1016/j.physrep.2020.08.003
Raghu S, Sriraam N, Temel Y, Rao SV, Kubben PL (2020) EEG based multi-class seizure type classification using convolutional neural network and transfer learning. Neural Netw 124:202–212. https://doi.org/10.1016/j.neunet.2020.01.017
Rizkallah J, Benquet P, Kabbara A, Dufor O, Wendling F, Hassan M (2018) Dynamic reshaping of functional brain networks during visual object recognition. J Neural Eng 15:56022. https://doi.org/10.1088/1741-2552/aad7b1
Rizkallah J, Annen J, Modolo J, Gosseries O, Benquet P, Mortaheb S, Amoud H, Cassol H, Mheich A, Thibaut A, Chatelle C, Hassan M, Panda R, Wendling F, Laureys S (2019) Decreased integration of EEG source-space networks in disorders of consciousness. Neuroimage Clin 23:101841. https://doi.org/10.1016/j.nicl.2019.101841
Roldan SM (2017) Object recognition in mental representations: directions for exploring diagnostic features through visual mental imagery. Front Psychol 8:833. https://doi.org/10.3389/fpsyg.2017.00833
Romeo RR, Segaran J, Leonard JA, Robinson ST, West MR, Mackey AP, Yendiki A, Rowe ML, Gabrieli JDE (2018) Language exposure relates to structural neural connectivity in childhood. J Neurosci 38:7870–7877. https://doi.org/10.1523/JNEUROSCI.0484-18.2018
Rubega M, Pascucci D, Queralt JR, van Mierlo P, Hagmann P, Plomp G, Michel CM (2019) Time-varying effective EEG source connectivity: the optimization of model parameters. Annu Int Conf IEEE Eng Med Biol Soc 2019:6438–6441. https://doi.org/10.1109/EMBC.2019.8856890
Saeedi A, Saeedi M, Maghsoudi A, Shalbaf A (2021) Major depressive disorder diagnosis based on effective connectivity in EEG signals: a convolutional neural network and long short-term memory approach. Cogn Neurodyn. https://doi.org/10.1007/s11571-020-09619-0
Salzman CD, Fusi S (2010) Emotion, cognition, and mental state representation in amygdala and prefrontal cortex. Annu Rev Neurosci 33:173–202. https://doi.org/10.1146/annurev.neuro.051508.135256
Sanchez Bornot JM, Wong-Lin K, Ahmad AL, Prasad G (2018) Robust EEG/MEG based functional connectivity with the envelope of the imaginary coherence: sensor space analysis. Brain Topogr 31:895–916. https://doi.org/10.1007/s10548-018-0640-0
Sarter M, Givens B, Bruno JP (2001) The cognitive neuroscience of sustained attention: where top-down meets bottom-up. Brain Res Rev 35:146–160. https://doi.org/10.1016/S0165-0173(01)00044-3
Savage N (2019) How AI and neuroscience drive each other forwards. Nature 571:S15–S17. https://doi.org/10.1038/d41586-019-02212-4
Schirrmeister RT, Springenberg JT, Fiederer LDJ, Glasstetter M, Eggensperger K, Tangermann M, Hutter F, Burgard W, Ball T (2017) Deep learning with convolutional neural networks for EEG decoding and visualization. Hum Brain Mapp 38:5391–5420. https://doi.org/10.1002/hbm.23730
Schultz DH, Cole MW (2016) Higher intelligence is associated with less task-related brain network reconfiguration. J Neurosci 36:8551–8561. https://doi.org/10.1523/JNEUROSCI.0358-16.2016
Seeber M, Cantonas L-M, Hoevels M, Sesia T, Visser-Vandewalle V, Michel CM (2019) Subcortical electrophysiological activity is detectable with high-density EEG source imaging. Nat Commun 10:753. https://doi.org/10.1038/s41467-019-08725-w
Sengupta B, Friston KJ, Penny WD (2014) Efficient gradient computation for dynamical models. Neuroimage 98:521–527. https://doi.org/10.1016/j.neuroimage.2014.04.040
Shapshak P (2018) Artificial intelligence and brain. Bioinformation 14:38–41. https://doi.org/10.6026/97320630014038
Shim M, Im C-H, Kim Y-W, Lee S-H (2018) Altered cortical functional network in major depressive disorder: a resting-state electroencephalogram study. Neuroimage Clin 19:1000–1007. https://doi.org/10.1016/j.nicl.2018.06.012
Shine JM, Poldrack RA (2018) Principles of dynamic network reconfiguration across diverse brain states. Neuroimage 180:396–405. https://doi.org/10.1016/j.neuroimage.2017.08.010
Si Y, Wu X, Li F, Zhang L, Duan K, Li P, Song L, Jiang Y, Zhang T, Zhang Y, Chen J, Gao S, Biswal B, Yao D, Xu P (2019) Different decision-making responses occupy different brain networks for information processing: a study based on EEG and TMS. Cereb Cortex 29:4119–4129. https://doi.org/10.1093/cercor/bhy294
Si Y, Li F, Duan K, Tao Q, Li C, Cao Z, Zhang Y, Biswal B, Li P, Yao D, Xu P (2020) Predicting individual decision-making responses based on single-trial EEG. Neuroimage 206:116333. https://doi.org/10.1016/j.neuroimage.2019.116333
Siegel JS, Ramsey LE, Snyder AZ, Metcalf NV, Chacko RV, Weinberger K, Baldassarre A, Hacker CD, Shulman GL, Corbetta M (2016) Disruptions of network connectivity predict impairment in multiple behavioral domains after stroke. Proc Natl Acad Sci USA 113:E4367–E4376. https://doi.org/10.1073/pnas.1521083113
Siew CSQ, Wulff DU, Beckage NM, Kenett YN (2019) Cognitive network science: a review of research on cognition through the lens of network representations, processes, and dynamics. Complexity 2019:1–24. https://doi.org/10.1155/2019/2108423
Sigman M, Dehaene S (2008) Brain mechanisms of serial and parallel processing during dual-task performance. J Neurosci 28:7585–7598. https://doi.org/10.1523/JNEUROSCI.0948-08.2008
Simony E, Honey CJ, Chen J, Lositsky O, Yeshurun Y, Wiesel A, Hasson U (2016) Dynamic reconfiguration of the default mode network during narrative comprehension. Nat Commun 7:12141. https://doi.org/10.1038/ncomms12141
Singh SP (2014) Magnetoencephalography: basic principles. Ann Indian Acad Neurol 17:S107–S112. https://doi.org/10.4103/0972-2327.128676
Sizemore AE, Bassett DS (2018) Dynamic graph metrics: tutorial, toolbox, and tale. Neuroimage 180:417–427. https://doi.org/10.1016/j.neuroimage.2017.06.081
Sockeel S, Schwartz D, Pélégrini-Issac M, Benali H (2016) Large-scale functional networks identified from resting-state EEG using spatial ICA. PLoS ONE 11:e0146845. https://doi.org/10.1371/journal.pone.0146845
Song P, Lin H, Liu C, Jiang Y, Lin Y, Xue Q, Xu P, Wang Y (2019) Transcranial magnetic stimulation to the middle frontal gyrus during attention modes induced dynamic module reconfiguration in brain networks. Front Neuroinform 13:22. https://doi.org/10.3389/fninf.2019.00022
Stephan KE, Friston KJ (2010) Analyzing effective connectivity with fMRI. Wiley Interdiscip Rev Cogn Sci 1:446–459. https://doi.org/10.1002/wcs.58
Stevens FL, Hurley RA, Taber KH (2011) Anterior cingulate cortex: unique role in cognition and emotion. J Neuropsychiatry Clin Neurosci 23:121–125. https://doi.org/10.1176/jnp.23.2.jnp121
Talebi N, Nasrabadi AM, Mohammad-Rezazadeh I (2018) Estimation of effective connectivity using multi-layer perceptron artificial neural network. Cogn Neurodyn 12:21–42. https://doi.org/10.1007/s11571-017-9453-1
Tallon-Baudry C (2011) On the neural mechanisms subserving consciousness and attention. Front Psychol 2:397. https://doi.org/10.3389/fpsyg.2011.00397
Tang CY, Eaves EL, Ng JC, Carpenter DM, Mai X, Schroeder DH, Condon CA, Colom R, Haier RJ (2010) Brain networks for working memory and factors of intelligence assessed in males and females with fMRI and DTI. Intelligence 38:293–303. https://doi.org/10.1016/j.intell.2010.03.003
Tanimizu T, Kono K, Kida S (2018) Brain networks activated to form object recognition memory. Brain Res Bull 141:27–34. https://doi.org/10.1016/j.brainresbull.2017.05.017
Teramoto H, Morita A, Ninomiya S, Akimoto T, Shiota H, Kamei S (2016) Relation between resting state front-parietal EEG coherence and executive function in Parkinson’s disease. Biomed Res Int 2016:2845754. https://doi.org/10.1155/2016/2845754
Thompson RF, Kim JJ (1996) Memory systems in the brain and localization of a memory. Proc Natl Acad Sci USA 93:13438–13444. https://doi.org/10.1073/pnas.93.24.13438
Tian Y, Ma W, Tian C, Xu P, Yao D (2013) Brain oscillations and electroencephalography scalp networks during tempo perception. Neurosci Bull 29:731–736. https://doi.org/10.1007/s12264-013-1352-9
Toppi J, Astolfi L, Poudel GR, Innes CRH, Babiloni F, Jones RD (2016) Time-varying effective connectivity of the cortical neuroelectric activity associated with behavioural microsleeps. Neuroimage 124:421–432. https://doi.org/10.1016/j.neuroimage.2015.08.059
Tsolaki A, Kazis D, Kompatsiaris I, Kosmidou V, Tsolaki M (2014) Electroencephalogram and Alzheimer’s disease: clinical and research approaches. Int J Alzheimers Dis 2014:349249. https://doi.org/10.1155/2014/349249
van de Steen F, Almgren H, Razi A, Friston K, Marinazzo D (2019) Dynamic causal modelling of fluctuating connectivity in resting-state EEG. Neuroimage 189:476–484. https://doi.org/10.1016/j.neuroimage.2019.01.055
van den Heuvel MP, Sporns O (2019) A cross-disorder connectome landscape of brain dysconnectivity. Nat Rev Neurosci 20:435–446. https://doi.org/10.1038/s41583-019-0177-6
van der Velde F, de Kamps M (2010) Learning of control in a neural architecture of grounded language processing. Cogn Syst Res 11:93–107. https://doi.org/10.1016/j.cogsys.2008.08.007
van der Meij R, van Ede F, Maris E (2016) Rhythmic components in extracranial brain signals reveal multifaceted task modulation of overlapping neuronal activity. PLoS ONE 11:e0154881. https://doi.org/10.1371/journal.pone.0154881
van Duinkerken E, Schoonheim MM, IJzerman RG, Moll AC, Landeira-Fernandez J, Klein M, Diamant M, Snoek FJ, Barkhof F, Wink A-M (2017) Altered eigenvector centrality is related to local resting-state network functional connectivity in patients with longstanding type 1 diabetes mellitus. Hum Brain Mapp 38:3623–3636. https://doi.org/10.1002/hbm.23617
Vidaurre D, Smith SM, Woolrich MW (2017) Brain network dynamics are hierarchically organized in time. Proc Natl Acad Sci USA 114:12827–12832. https://doi.org/10.1073/pnas.1705120114
Wahbeh H, Goodrich E, Goy E, Oken BS (2016) Mechanistic pathways of mindfulness meditation in Combat Veterans with posttraumatic stress disorder. J Clin Psychol 72:365–383. https://doi.org/10.1002/jclp.22255
Wang W-J, Hsieh I-F, Chen C-C (2013) Accelerating computation of DCM for ERP in MATLAB by external function calls to the GPU. PLoS ONE 8:e66599. https://doi.org/10.1371/journal.pone.0066599
Wang Y, Chung MK, Dentico D, Lutz A, Davidson R (2017) Topological network analysis of electroencephalographic power maps. Connect Neuroimaging 10511:134–142. https://doi.org/10.1007/978-3-319-67159-8_16
Wen X, Zhang D, Liang B, Zhang R, Wang Z, Wang J, Liu M, Huang R (2015) Reconfiguration of the brain functional network associated with visual task demands. PLoS ONE 10:e0132518. https://doi.org/10.1371/journal.pone.0132518
Wig GS (2017) Segregated systems of human brain networks. Trends Cogn Sci 21:981–996. https://doi.org/10.1016/j.tics.2017.09.006
Williams NJ, Daly I, Nasuto SJ (2018) Markov model-based method to analyse time-varying networks in EEG task-related data. Front Comput Neurosci 12:76. https://doi.org/10.3389/fncom.2018.00076
Wipf D, Nagarajan S (2009) A unified Bayesian framework for MEG/EEG source imaging. Neuroimage 44:947–966. https://doi.org/10.1016/j.neuroimage.2008.02.059
Wu J, Yang J, Chen M, Li S, Zhang Z, Kang C, Ding G, Guo T (2019) Brain network reconfiguration for language and domain-general cognitive control in bilinguals. Neuroimage 199:454–465. https://doi.org/10.1016/j.neuroimage.2019.06.022
Xu P, Xiong X, Xue Q, Li P, Zhang R, Wang Z, Valdes-Sosa PA, Wang Y, Yao D (2014a) Differentiating between psychogenic nonepileptic seizures and epilepsy based on common spatial pattern of weighted EEG resting networks. IEEE Trans Biomed Eng 61:1747–1755. https://doi.org/10.1109/TBME.2014.2305159
Xu P, Xiong XC, Xue Q, Tian Y, Peng Y, Zhang R, Li PY, Wang YP, Yao DZ (2014b) Recognizing mild cognitive impairment based on network connectivity analysis of resting EEG with zero reference. Physiol Meas 35:1279–1298. https://doi.org/10.1088/0967-3334/35/7/1279
Xue Q, Wang Z-Y, Xiong X-C, Tian C-Y, Wang Y-P, Xu P (2013) Altered brain connectivity in patients with psychogenic non-epileptic seizures: a scalp electroencephalography study. J Int Med Res 41:1682–1690. https://doi.org/10.1177/0300060513496170
Yantis S (2008) The neural basis of selective attention: cortical sources and targets of attentional modulation. Curr Dir Psychol Sci 17:86–90. https://doi.org/10.1111/j.1467-8721.2008.00554.x
Yao Y, Raman SS, Schiek M, Leff A, Frässle S, Stephan KE (2018) Variational Bayesian inversion for hierarchical unsupervised generative embedding (HUGE). Neuroimage 179:604–619. https://doi.org/10.1016/j.neuroimage.2018.06.073
Ye S, Kitajo K, Kitano K (2020) Information-theoretic approach to detect directional information flow in EEG signals induced by TMS. Neurosci Res 156:197–205. https://doi.org/10.1016/j.neures.2019.09.003
Yi G-S, Wang J, Deng B, Wei X-L (2017) Complexity of resting-state EEG activity in the patients with early-stage Parkinson’s disease. Cogn Neurodyn 11:147–160. https://doi.org/10.1007/s11571-016-9415-z
Yi C, Chen C, Jiang L, Tao Q, Li F, Si Y, Zhang T, Yao D, Xu P (2020) Constructing EEG large-scale cortical functional network connectivity based on brain atlas by S estimator. IEEE Trans Cogn Dev Syst. https://doi.org/10.1109/TCDS.2020.2991414
Yin Z, Li J, Zhang Y, Ren A, von Meneen KM, Huang L (2017) Functional brain network analysis of schizophrenic patients with positive and negative syndrome based on mutual information of EEG time series. Biomed Sig Process and Contr 31:331–338. https://doi.org/10.1016/j.bspc.2016.08.013
Zeng K, Kang J, Ouyang G, Li J, Han J, Wang Y, Sokhadze EM, Casanova MF, Li X (2017) Disrupted brain network in children with autism spectrum disorder. Sci Rep 7:16253. https://doi.org/10.1038/s41598-017-16440-z
Zeng H, Yang C, Dai G, Qin F, Zhang J, Kong W (2018) EEG classification of driver mental states by deep learning. Cogn Neurodyn 12:597–606. https://doi.org/10.1007/s11571-018-9496-y
Zhang Y, Xu P, Guo D, Yao D (2013a) Prediction of SSVEP-based BCI performance by the resting-state EEG network. J Neural Eng 10:66017. https://doi.org/10.1088/1741-2560/10/6/066017
Zhang Y, Xu P, Huang Y, Cheng K, Yao D (2013b) SSVEP response is related to functional brain network topology entrained by the flickering stimulus. PLoS ONE 8:e72654. https://doi.org/10.1371/journal.pone.0072654
Zhang Y, Guo D, Cheng K, Yao D, Xu P (2015) The graph theoretical analysis of the SSVEP harmonic response networks. Cogn Neurodyn 9:305–315. https://doi.org/10.1007/s11571-015-9327-3
Zhang T, Liu T, Li F, Li M, Liu D, Zhang R, He H, Li P, Gong J, Luo C, Yao D, Xu P (2016) Structural and functional correlates of motor imagery BCI performance: insights from the patterns of fronto-parietal attention network. Neuroimage 134:475–485. https://doi.org/10.1016/j.neuroimage.2016.04.030
Zhang T, Li M, Zhang L, Biswal B, Yao D, Xu P (2018) The time-varying network patterns in motor imagery revealed by adaptive directed transfer function analysis for fMRI. IEEE Access 6:60339–60352. https://doi.org/10.1109/ACCESS.2018.2875492
Zhang T, Wang F, Li M, Li F, Tan Y, Zhang Y, Yang H, Biswal B, Yao D, Xu P (2019) Reconfiguration patterns of large-scale brain networks in motor imagery. Brain Struct Funct 224:553–566. https://doi.org/10.1007/s00429-018-1786-y
Zhang S, Sun J, Gao X (2020) The effect of fatigue on brain connectivity networks. Brain Sci Adv 6:120–131. https://doi.org/10.26599/BSA.2020.9050008
Zhang R, Li F, Zhang T, Yao D, Xu P (2020) Subject inefficiency phenomenon of motor imagery brain-computer interface: influence factors and potential solutions. Brain Sci Adv 6:224–241. https://doi.org/10.26599/BSA.2020.9050021
Zhang L, Li Z, Zhang F, Gu R, Peng W, Hu L (2020) Demystifying signal processing techniques to extract task-related EEG responses for psychologists. Brain Sci Adv 6:171–188. https://doi.org/10.26599/BSA.2020.9050018
Zhao Q, Li H, Hu B, Wu H, Liu Q (2017) Abstinent heroin addicts tend to take risks: ERP and source localization. Front Neurosci 11:681. https://doi.org/10.3389/fnins.2017.00681
Zheng M, Allard A, Hagmann P, Alemán-Gómez Y, Serrano MÁ (2020) Geometric renormalization unravels self-similarity of the multiscale human connectome. Proc Natl Acad Sci USA 117:20244–20253. https://doi.org/10.1073/pnas.1922248117
Zhou Y, Zeidman P, Wu S, Razi A, Chen C, Yang L, Zou J, Wang G, Wang H, Friston KJ (2018) Altered intrinsic and extrinsic connectivity in schizophrenia. Neuroimage Clin 17:704–716. https://doi.org/10.1016/j.nicl.2017.12.006
Zhuge H, Zhang J (2010) Topological centrality and its e-Science applications. J Am Soc Inf Sci 61:1824–2184. https://doi.org/10.1002/asi.21353
Zuo N, Yang Z, Liu Y, Li J, Jiang T (2018) Core networks and their reconfiguration patterns across cognitive loads. Hum Brain Mapp 39(9):3546–3557. https://doi.org/10.1002/hbm.24193
Acknowledgements
This work was supported by the National Natural Science Foundation of China (#61961160705, #U19A2082, #61901077), the Science and Technology Development Fund, Macau SAR (File no. 0045/2019/AFJ), the Project of Science and Technology Department of Sichuan Province (#2021YFSY0040, #2018JZ0073, #2020ZYD013), and the Key Research and Development Program of Guangdong Province, China (#2018B030339001).
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Luo, C., Li, F., Li, P. et al. A survey of brain network analysis by electroencephalographic signals. Cogn Neurodyn 16, 17–41 (2022). https://doi.org/10.1007/s11571-021-09689-8
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DOI: https://doi.org/10.1007/s11571-021-09689-8