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A Novel lncRNA lncRNA-4045 Promotes the Progression of Hepatocellular Carcinoma by Affecting the Expression of AKR1B10

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Abstract

Background

Long noncoding RNAs (lncRNAs) have been shown to be related to the occurrence and development of a variety of cancers including hepatocellular carcinoma (HCC). However, a large number of potential HCC-related lncRNAs remain undiscovered and are yet to be fully understood.

Methods

Differentially expressed lncRNAs were first obtained from the tumor tissues and adjacent normal tissues of five HCC patients using high-throughput microarray chips. Then the expression levels of 10 differentially expressed lncRNAs were verified in 50 pairs of tissue samples from patients with HCC by quantitative real-time PCR (qRT-PCR). The oncogenic effects of lncRNA-4045 (ENST00000524045.6) in HCC cell lines were verified through a series of in vitro experiments including CCK-8 assay, plate clone formation assay, transwell assay, scratch assay, and flow cytometry. Subsequently, the potential target genes of lncRNA-4045 were predicted by bioinformatics analysis, fluorescence in situ hybridization assay, and RNA sequencing. The mechanism of lncRNA-4045 in HCC was explored by WB assay as well as rescue and enhancement experiments.

Results

The results from microarray chips showed 1,708 lncRNAs to have been significantly upregulated and 2725 lncRNAs to have been significantly downregulated in HCC tissues. Via validation in 50 HCC patients, a novel lncRNA lncRNA-4045 was found significantly upregulated in HCC tissues. Additionally, a series of in vitro experiments showed that lncRNA-4045 promoted the proliferation, invasion, and migration of HCC cell lines, and inhibited the apoptosis of HCC cell lines. The results of qRT-PCR in HCC tissues showed that the expression levels of AKR1B10 were significantly positively correlated with lncRNA-4045. LncRNA-4045 knockdown significantly down-regulated AKR1B10 protein expression, and overexpression of lncRNA-4045 led to significant up-regulation of AKR1B10 protein in HCC cell lines. Lastly, down-regulation of AKR1B10 could partially eliminate the enhancement of cell proliferation induced by lncRNA-4045 overexpression, while up-regulation of AKR1B10 was shown to enhance those effects.

Conclusion

LncRNA-4045 may promote HCC via enhancement of the expression of AKR1B10 protein.

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Acknowledgments

This work was supported by National Natural Science Foundation of China, Guangxi Colleges and Universities Key Laboratory of Prevention and Control of Highly Prevalent Diseases, and Academician Dongxin Lin workstation.

Funding

This study was supported by grants from the National Natural Science Foundation of China (81960613).

Author information

Authors and Affiliations

Authors

Contributions

Chao Tan and Xi Zeng designed the research, performed the experiments, analyzed the data and co-wrote the paper. Meile Mo, Xiaoyun Ma, collected tissue samples and performed the experiments. Bihu Liu collected clinicopathological information and performed bioinformatics analysis. Shun Liu, Xiaoyun Zeng, Dongping Huang, and Xiaoqiang Qiu supervised the research and revised the manuscript. All authors approved the final manuscript.

Corresponding author

Correspondence to Xiaoqiang Qiu.

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Competing interests

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Ethical approval and consent to participate

All participants signed informed consent forms before participating in this study. All procedures performed in this study were in accordance with the Declaration of Helsinki. The research was approved by the Academic Ethics Committee of Guangxi Medical University.

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Additional file 1

: Fig. S1. Hierarchical clustering analysis of differentially expressed lncRNAs and mRNAs in five pairs of HCC and adjacent normal tissues. A: Differentially expressed lncRNAs; B: Differentially expressed mRNAs.

Additional file 2

: Fig. S2 Background expression of lncRNA-4045 in a normal liver cell line and HCC cell lines.

Additional file 3

: Fig. S3 Clustering heat map of differential genes in HCCLM3 with lncRNA-4045 knockdown and negative control.

Additional file 4

: Fig. S4 Comparison of AKR1B10 expression levels in TCGA and GTEx-derived HCC tissues and normal liver tissues. The red box represents HCC tissues, and the gray box represents normal liver tissues. *P < 0.05.

Additional file 5

: Table S1. Clinical information of five HCC patients.

Additional file 6

: Table S2. Top 10 differential genes in HCCLM3 cells with knockdown of lncRNA-4045.

Additional file 7

: Table S3. Top 10 differential genes in data derived from TCGA.

Additional file 8

: WB original image-1

Additional file 9

: WB original image-2

Additional file 10

: WB original image-3

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: WB original image-4

Additional file 12

: WB original image-5

Additional file 13

: WB original image-6

Additional file 14

: WB original image annotation

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Tan, C., Zeng, X., Guo, X. et al. A Novel lncRNA lncRNA-4045 Promotes the Progression of Hepatocellular Carcinoma by Affecting the Expression of AKR1B10. Dig Dis Sci (2024). https://doi.org/10.1007/s10620-024-08383-z

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  • DOI: https://doi.org/10.1007/s10620-024-08383-z

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