Skip to main content

Advertisement

Log in

A novel nonsense variant in EXOC8 underlies a neurodevelopmental disorder

  • Original Article
  • Published:
neurogenetics Aims and scope Submit manuscript

Abstract

Human exocyst complex is an evolutionary conserved multimeric complex composed of proteins encoded by eight genes EXOC1-EXOC8. It is known that the exocyst complex plays a role in ciliogenesis, cytokinesis, cell migration, autophagy, and fusion of secretory vesicles. Recently, loss of function variants in EXOC7 and EXOC8 has been associated with abnormalities of cerebral cortical development leading to a neurodevelopmental phenotype. Neurodevelopmental disorders are a huge group of clinically and genetically heterogeneous disorders. In the present study, we recruited a large consanguineous family segregating a neurodevelopmental disorder in an autosomal recessive form. We performed clinical phenotyping by imaging the patient’s brain followed by whole exome sequencing examining DNA from two affected individuals. The clinical phenotypes of the disease were suggestive of brain atrophy. Clinical examination revealed intellectual impairment with hypertonia and brisk reflexes. WES followed by Sanger sequencing revealed a novel homozygous nonsense mutation [EXOC8; NM_175876.5; c.1714G > T; p.(Glu572Ter)] in the DNA of affected individuals. Both parents of the patients were heterozygous for the identified mutation. All the pathogenicity prediction softwares predicted the identified variant as disease causing. This study reports a second protein-truncating variant in EXOC8. The findings confirm that loss of function variants in EXOC8 underlies a neurodevelopmental disorder. The identification of a protein-truncating variant in EXOC8 in the current study can be helpful in establishing genotype–phenotype correlations. Our results also provide new insights into genetic counseling and clinical management for the affected individuals.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  1. Mei K, Li Y, Wang S et al (2018) Cryo-EM structure of the exocyst complex. Nat Struct Mol Biol 25(2):139–146. https://doi.org/10.1038/s41594-017-0016-2

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Heider MR, Munson M (2012) Exorcising the exocyst complex. Traffic 13:898–907. https://doi.org/10.1111/j.1600-0854.2012.01353.x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Luo G, Zhang J, Luca FC, Guo W (2013) Mitotic phosphorylation of Exo84 disrupts exocyst assembly and arrests cell growth. J Cell Biol 202:97–111. https://doi.org/10.1083/jcb.201211093

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Wu B, Guo W (2015) The exocyst at a glance. J Cell Sci 128:2957–2964. https://doi.org/10.1242/jcs.156398

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. He B, Guo W (2009) The exocyst complex in polarized exocytosis. Curr Opin Cell Biol 21:537–542. https://doi.org/10.1016/j.ceb.2009.04.007 (Epub 2009 May 25)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Dixon-Salazar TJ, Silhavy JL, Udpa N et al (2012) Exome sequencing can improve diagnosis and alter patient management. Sci Transl Med 4(138):13878. https://doi.org/10.1126/scitranslmed.3003544

    Article  Google Scholar 

  7. Coulter ME, Musaev D, DeGennaro EM et al (2020) Regulation of human cerebral cortical development by EXOC7 and EXOC8, components of the exocyst complex, and roles in neural progenitor cell proliferation and survival. Genet Med 22:1040–1050. https://doi.org/10.1038/s41436-020-0758-9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Banerjee TD, Middleton F, Faraone SV (2007) Environmental risk factors for attention-deficit hyperactivity disorder. Acta Paediatr 96(9):1269–1274. https://doi.org/10.1111/j.1651-2227.2007.00430.x

    Article  PubMed  Google Scholar 

  9. Khan S, Lin S, Harlalka GV et al (2019) BBS5 and INPP5E mutations associated with ciliopathy disorders in families from Pakistan. Ann Hum Genet 83(6):477–482. https://doi.org/10.1111/ahg.12336

    Article  CAS  PubMed  Google Scholar 

  10. Bibi F, Haider N, Din SU et al. (2020) Sequence variants in three genes underlying leukodystrophy in Pakistani families. Int J Dev Neurosci 80(5):380–388. https://doi.org/10.1002/jdn.10036

  11. Cardoso AR, Lopes-Marques M, Silva RM et al (2019) Essential genetic findings in neurodevelopmental disorders. Hum Genomics 13:31. https://doi.org/10.1186/s40246-019-0216-4

  12. Reuter MS, Tawamie H, Buchert R et al (2017) Diagnostic yield and novel candidate genes by exome sequencing in 152 consanguineous families with neurodevelopmental disorders. JAMA Psychiat 74(3):293–299. https://doi.org/10.1001/jamapsychiatry.2016.3798

    Article  Google Scholar 

  13. Parenti I, Rabaneda LG, Schoen H, Novarino G (2020) Neurodevelopmental disorders: from genetics to functional pathways. Trends Neurosci 43(8):608–621. https://doi.org/10.1016/j.tins.2020.05.004

    Article  CAS  PubMed  Google Scholar 

  14. Umair M, Ahmad F, Ullah A (2018) Whole exome sequencing as a diagnostic tool for genetic disorders in Pakistan. Pak J Med Res 57(2):90–91

    Google Scholar 

  15. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual; preparation and analysis of eukaryotic genomic DNA, 3rd edn. Cold Spring Harbor Laboratory Press, New York, p 2001

    Google Scholar 

  16. Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754–1760. https://doi.org/10.1093/bioinformatics/btp324

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. McKenna A, Hanna M, Banks E (2010) The genome analysis toolkit: a MapReduce framework for analyzing next generation DNA sequencing data. Genome Res 20:1297–1303. https://doi.org/10.1101/gr.107524.110

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Jin R, Junutula JR, Matern HT, Ervin KE, Scheller RH, Brunger AT (2005) Exo84 and Sec5 are competitive regulatory Sec6/8 effectors to the RalA GTPase. EMBO J 24(12):2064–2074. https://doi.org/10.1038/sj.emboj.7600699

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Strande NT, Riggs ER, Buchanan AH et al (2017) Evaluating the clinical validity of gene-disease associations: an evidence-based framework developed by the clinical genome resource. Am J Hum Genet 100(6):895–906. https://doi.org/10.1016/j.ajhg.2017.04.015

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Dickinson ME, Flenniken AM, Ji X et al (2016) High-throughput discovery of novel developmental phenotypes. Nature 537:508–514. https://doi.org/10.1038/nature19356

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sulman Basit.

Ethics declarations

Conflict of interest

The authors declare no competing interests.

Additional information

Publisher's note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Ullah, A., Krishin, J., Haider, N. et al. A novel nonsense variant in EXOC8 underlies a neurodevelopmental disorder. Neurogenetics 23, 203–212 (2022). https://doi.org/10.1007/s10048-022-00692-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10048-022-00692-7

Keywords

Navigation