Skip to main content
Log in

Spectroscopic and computational investigations of Cobalt(II) binding to the innate immune protein human calprotectin

  • Original Paper
  • Published:
JBIC Journal of Biological Inorganic Chemistry Aims and scope Submit manuscript

Abstract

Human calprotectin (CP) is an innate immune protein that participates in the metal-withholding response to infection by sequestering essential metal nutrients from invading microbial pathogens. CP is comprised of S100A8 (α subunit, 10.8 kDa) and S100A9 (β subunit, 13.2 kDa). Two transition-metal binding sites of CP form at the S100A8/S100A9 dimer interface. Site 1 is a His3Asp motif comprised of His83 and His87 from the S100A8 subunit and His20 and Asp30 from the S100A9 subunit. Site 2 is an unusual hexahistidine motif composed of S100A8 residues His17 and His27 and S100A9 residues His91, His95, His103, and His105. In the present study, the His3Asp and His6 sites of CP were further characterized by utilizing Co2+ as a spectroscopic probe. Magnetic circular dichroism spectroscopy was employed in conjunction with electron paramagnetic resonance spectroscopy and density functional theory computations to characterize the Co2+-bound S100A8(C42S)/S100A9(C3S) CP-Ser variant and six site variants that allowed the His3Asp and His6 sites to be further probed. Our results provide new insight into the metal-binding sites of CP-Ser and the effect of amino acid substitutions on the structure of site 2.

Graphical abstract

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10
Fig. 11

Similar content being viewed by others

References

  1. Hood MI, Skaar EP (2012) Nat Rev Microbiol 10:525–537

    Article  CAS  PubMed  Google Scholar 

  2. Palmer LD, Skaar EP (2016) Transition metals and virulence in bacteria. Ann Rev Genet 50:67–91. https://doi.org/10.1146/annurev-genet-120215-035146

    Article  CAS  PubMed  Google Scholar 

  3. Waldron KJ, Rutherford JC, Ford D, Robinson NJ (2009) Nature 460:823–830

    Article  CAS  PubMed  Google Scholar 

  4. Murdoch CC, Skaar EP (2022) Nat Rev Microbiol 20:657–670

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Weinberg ED (1975) Jama-J Am Med Assoc 231:39–41

    Article  CAS  Google Scholar 

  6. Zygiel EM, Nolan EM (2018) Transition metal sequestration by the host-defense protein calprotectin. Ann Rev Biochem 87:621–643. https://doi.org/10.1146/annurev-biochem-062917-012312

    Article  CAS  PubMed  Google Scholar 

  7. Hunter MJ, Chazin WJ (1998) J Biol Chem 273:12427–12435

    Article  CAS  PubMed  Google Scholar 

  8. Vogl T, Roth J, Sorg C, Hillenkamp F, Strupat K (1999) J Am Soc Mass Spectrom 10:1124–1130

    Article  CAS  PubMed  Google Scholar 

  9. Leukert N, Vogl T, Strupat K, Reichelt R, Sorg C, Roth J (2006) J Mol Biol 359:961–972

    Article  CAS  PubMed  Google Scholar 

  10. Strupat K, Rogniaux H, Van Dorsselaer A, Roth J, Vogl T (2000) J Am Soc Mass Spectrom 11:780–788

    Article  CAS  PubMed  Google Scholar 

  11. Damo SM, Kehl-Fie TE, Sugitani N, Holt ME, Rathi S, Murphy WJ, Zhang YF, Betz C, Hench L, Fritz G, Skaar EP, Chazin WJ (2013) Proc Natl Acad Sci USA 110:3841–3846

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Gagnon DM, Brophy MB, Bowman SEJ, Stich TA, Drennan CL, Britt DR, Nolan EM (2015) JACS 137:3004–3016

    Article  CAS  Google Scholar 

  13. Korndorfer IP, Brueckner F, Skerra A (2007) J Mol Biol 370:887–898

    Article  PubMed  Google Scholar 

  14. Nakashige TG, Zygiel EM, Drennan CL, Nolan EM (2017) J Am Chem Soc 139:8828–8836

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Nakashige TG, Stephan JR, Cunden LS, Brophy MB, Wommack AJ, Keegan BC, Shearer JM, Nolan EM (2016) J Am Chem Soc 138:12243–12251

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Nakashige TG, Zhang B, Krebs C, Nolan EM (2015) Nat Chem Biol 11:765

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Adhikari J, Stephan JR, Rempel DL, Nolan EM, Gross ML (2020) J Am Chem Soc 142:13372–13383

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Silvers R, Stephan JR, Griffin RG, Nolan EM (2021) J Am Chem Soc 143:18073–18090

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Brophy MB, Hayden JA, Nolan EM (2012) J Am Chem Soc 134:18089–18100

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Hayden JA, Brophy MB, Cunden LS, Nolan EM (2013) J Am Chem Soc 135:775–787

    Article  CAS  PubMed  Google Scholar 

  21. Stephan JR, Nolan EM (2016) Chem Sci 7:1962–1975

    Article  CAS  PubMed  Google Scholar 

  22. Brophy M, Nakashige T, Gaillard A, Nolan E (2013) J Am Chem Soc 135:17804–17817

    Article  PubMed  PubMed Central  Google Scholar 

  23. Nakashige TG, Nolan EM (2017) Metallomics 9:1086–1095

    Article  CAS  PubMed  Google Scholar 

  24. Nakashige TG, Bowman SEJ, Zygiel EM, Drennan CL, Nolan EM (2018) Biophysical examination of the calcium-modulated nickel-binding properties of human calprotectin reveals conformational change in the EF-hand domains and His3Asp site. Biochemistry 57(28):4155–4164

    Article  CAS  PubMed  Google Scholar 

  25. Moroz OV, Blagova EV, Wilkinson AJ, Wilson KS, Bronstein IB (2009) J Mol Biol 391:536–551

    Article  CAS  PubMed  Google Scholar 

  26. Brodersen DE, Nyborg J, Kjeldgaard M (1999) Biochemistry 38:1695–1704

    Article  CAS  PubMed  Google Scholar 

  27. Moroz OV, Antson AA, Grist SJ, Maitland NJ, Dodson GG, Wilson KS, Lukanidin E, Bronstein IB (2003) Acta Crystallogr Sect D Biol Crystallogr 59:859–867

    Article  CAS  Google Scholar 

  28. Baker TM, Nakashige TG, Nolan EM, Neidig ML (2017) Chem Sci 8:1369–1377

    Article  CAS  PubMed  Google Scholar 

  29. Besold AN, Gilston BA, Radin JN, Ramsoomair C, Culbertson EM, Li CX, Cormack BP, Chazin WJ, Kehl-Fie TE, Culotta VC (2018) Infect Immunity 86:2

    Article  Google Scholar 

  30. Wang JF, Lonergan ZR, Gonzalez-Gutierrez G, Nairn BL, Maxwell CN, Zhang YX, Andreini C, Karty JA, Chazin WJ, Trinidad JC, Skaar EP, Giedroc DP (2019) Cell Chem Biol 26:745

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Zygiel EM, Nelson CE, Brewer LK, Oglesby-Sherrouse AG, Nolan EM (2019) J Biol Chem 294:3549–3562

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Maret W, Vallee BL (1993) Metallobiochem Part C 226:52–71

    CAS  Google Scholar 

  33. Vallee BL (1971). In: Mertz W, Cornatzer WE (eds) Newer trace elements in nutrition. Dekker, New York, p 33

    Google Scholar 

  34. Vallee BL, Rupley JA, Coombs TL, Neurath H (1958) J Am Chem Soc 80:4750

    Article  CAS  Google Scholar 

  35. Vallee BL (1973) Adv Exp Med Biol 40:1–12

    Article  CAS  PubMed  Google Scholar 

  36. Harding MM, Nowicki MW, Walkinshaw MD (2010) Crystallogr Rev 16:247–302

    Article  CAS  Google Scholar 

  37. Johnson MK (2000). In: Que L (ed) Physical methods in bioinorganic chemistry. University Science Books, Sausalito, pp 233–285

    Google Scholar 

  38. Solomon EI, Lever ABP (1999) Inorganic electronic structure and spectroscopy. Wiley, New York

    Google Scholar 

  39. Kaden TA, Holmqui B, Vallee BL (1974) Inorg Chem 13:2585–2590

    Article  CAS  Google Scholar 

  40. Holmquist B, Kaden TA, Vallee BL (1975) Biochemistry 14:1454–1461

    Article  CAS  PubMed  Google Scholar 

  41. Tomkowicz Z, Ostrovsky S, Foro S, Calvo-Perez V, Haase W (2012) Inorg Chem 51:6046–6055

    Article  CAS  PubMed  Google Scholar 

  42. Harding MJ, Briat B (1973) Mol Phys 25:745–776

    Article  CAS  Google Scholar 

  43. Larrabee JA, Schenk G, Mitic N, Riley MJ (2015) Eur Biophys J Biophys Lett 44:393–415

    Article  CAS  Google Scholar 

  44. Neese F (2012) The ORCA program system. Wiley Interdiscip Rev Comput Mol Sci 2:73–78. https://doi.org/10.1002/wcms.81

    Article  CAS  Google Scholar 

  45. Schafer A, Huber C, Ahlrichs R (1994) J Chem Phys 100:5829–5835

    Article  Google Scholar 

  46. Schafer A, Horn H, Ahlrichs R (1992) J Chem Phys 97:2571–2577

    Article  Google Scholar 

  47. Lee CT, Yang WT, Parr RG (1988) Phys Rev B 37:785–789

    Article  CAS  Google Scholar 

  48. Kaden TA, Vallee BL, Holmquis B (1972) Biochem Biophys Res Commun 46:1654

    Article  CAS  PubMed  Google Scholar 

  49. Solomon EI, Neidig ML, Schenk G (2004) Magnetic circular dichroism of paramagnetic species. In: McCleverty JA, Meyer TJ (ed) Comprehensive coordination chemistry II: from biology to nanotechnology. Elsevier/Pergamon, Oxford, UK, pp 339–349. https://doi.org/10.1016/B0-08-043748-6/01216-0

    Chapter  Google Scholar 

  50. Neese F (2006) J Biol Inorg Chem 11:702–711

    Article  CAS  PubMed  Google Scholar 

  51. Neese F (2009) Coord Chem Rev 253:526–563

    Article  CAS  Google Scholar 

  52. Krzystek J, Zvyagin SA, Ozarowski A, Fiedler AT, Brunold TC, Telser J (2004) J Am Chem Soc 126:2148–2155

    Article  CAS  PubMed  Google Scholar 

  53. Larrabee JA, Alessi CM, Asiedu ET, Cook JO, Hoerning KR, Klingler LJ, Okin GS, Santee SG, Volkert TL (1997) J Am Chem Soc 119:4182–4196

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by the National Science Foundation Grant no. CHE-1352132 (CAREER to EMN), the National Science Foundation Graduate Research Fellowship Program under Grant no. DGE-1256259 (fellowship to MMK), and the National Science Foundation grant CHE-0840494 (computational resources).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Elizabeth M. Nolan or Thomas C. Brunold.

Ethics declarations

Conflict of interest

The authors declare no competing financial interest.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the electronic supplementary material.

Supplementary file1 (PDF 1851 kb)

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Killian, M.M., Brophy, M.B., Nolan, E.M. et al. Spectroscopic and computational investigations of Cobalt(II) binding to the innate immune protein human calprotectin. J Biol Inorg Chem 29, 127–137 (2024). https://doi.org/10.1007/s00775-023-02034-w

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00775-023-02034-w

Keywords

Navigation