Skip to main content

Gene Expression PPI Network Clustering Analysis Between Endometrial Cancer and Ovarian Cancer

  • Conference paper
  • First Online:
Advances in Intelligent Information Hiding and Multimedia Signal Processing

Part of the book series: Smart Innovation, Systems and Technologies ((SIST,volume 211))

  • 478 Accesses

Abstract

Recently, computer intelligent analysis as a significant technical means to discuss the differential mutant genes expression with the PPI network is current hot issues. In this paper, we mainly focus on discussing the relationship between endometrial cancer (EC) and ovarian cancer (OC) based on the gene expression, which could be classified into typical 13 categories after clustering processing over PPI network. Especially for the further analysis of homologous and heterogeneous genes’ comparison based on the similar protein function expression, we present a categorical scale to calculate the probability of endometrial cancer metastasizes to ovarian cancer by statistical method.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Sevimoglu, T., Arga, K.Y.: The role of protein interaction networks in systems biomedicine. Comput. Struct. Biotechnol. J. 11(18), 22–27 (2014)

    Article  Google Scholar 

  2. van Niekerk, C.C., Bulten, J., Vooijs, G.P., Verbeek, A.L.: The Association between Primary Endometrioid Carcinoma of the Ovary and Synchronous Malignancy of the Endometrium. Obstet Gynecol Int (2010)

    Google Scholar 

  3. Ricci, R., Komminoth, P., Bannwart, F., Torhorst, J., Wight, E., et al.: PTEN as a molecular marker to distinguish metastatic from primary synchronous endometrioid carcinomas of the ovary and uterus. Diagn. Mol. Pathol. 12(2), 71–78 (2003)

    Article  Google Scholar 

  4. Cancer Genome Atlas Research, N.: Integrated genomic analyses of ovarian carcinoma. Nature 10(11), 609–615 (2011)

    Google Scholar 

  5. Cancer Genome Atlas Research, N, et al.: Integrated genomic characterization of end endometrial carcinoma. Nature 5(1), 67–73 (2013)

    Google Scholar 

  6. McConechy, M.K., et al.: Ovarian and endometrial endometrioid carcinomas have distinct CTNNB1 and PTEN mutation profiles. ModPathol 27(1), 128–134 (2014)

    Google Scholar 

  7. Kurman, R.J., Shih, IeM.: Molecular pathogenesis and extra ovarian origin of epithelial ovarian cancer—shifting the paradigm. Hum. Pathol. 42(7), 918–931 (2011)

    Google Scholar 

  8. McConechy, M.K., Anglesio, M.S., Kalloger, S.E., et al.: Subtype-specific mutation of PP2R1A in endometrial and ovarian carcinomas. J. Pathol. 223(5), 567–573 (2011)

    Article  Google Scholar 

  9. Menyhárt, O., Fekete, J.T., Győrffy, B.: Gene expression indicates altered immune modulation and signaling pathway activation in ovarian cancer patients resistant to Topotecan. Int. J. Mol. Sci. 20(11) (2019)

    Google Scholar 

  10. Reid, B.M., Permuth, J.B., Chen, Y.A., et al.: Genome-wide Analysis of Common Copy Number Variation and Epithelial Ovarian Cancer Risk 28(7), 1117–1126 (2019)

    Google Scholar 

  11. Xiong, Y., Guo, M., Ruan, L., et al.: Heterogeneous network embedding enabling accurate disease association predictions. BMC Med. Genomics 186(12) (2019)

    Google Scholar 

  12. Haque, M.M., Nilsson, E.E., Holder, L.B., et al.: Genomic clustering of differential DNA methylated regions associated with the epigenetic transgenerational inheritance of disease and phenotypic variation. BMC Genomics 418(17) (2016)

    Google Scholar 

  13. cBioportal For Cancer Homepage. https://www.cbioportal.org/. last accessed 2020/4/16

  14. COSMIC Homepage. https://cancer.Sanger.ac.uk. last accessed 2020/4/22

  15. PubMed Homepage. https://www.ncbi.nlm.nih.gov/pubmed. last accessed 2020/4/22

  16. String Homepage. https://string-db.org/. last accessed 2020/4/21

  17. Cytoscape Homepage. https://cytoscape.org/. last accessed 2020/4/18

Download references

Acknowledgements

This work was supported by the National Natural Science Foundation of China (No. 61701104), and by the Science and Technology Development Plan of Jilin Province, China (No.20190201194JC).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ling Wang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Zhou, T.H., Pu, W.J., Xie, H., Zhang, L.Y., Wang, L. (2021). Gene Expression PPI Network Clustering Analysis Between Endometrial Cancer and Ovarian Cancer. In: Pan, JS., Li, J., Namsrai, OE., Meng, Z., Savić, M. (eds) Advances in Intelligent Information Hiding and Multimedia Signal Processing. Smart Innovation, Systems and Technologies, vol 211. Springer, Singapore. https://doi.org/10.1007/978-981-33-6420-2_24

Download citation

Publish with us

Policies and ethics