Skip to main content

Differential Diagnosis Between Influenza and Other Respiratory Viral Infections: What Are the Differential Diagnoses?

  • Chapter
  • First Online:
Influenza

Abstract

Respiratory viruses causing seasonal epidemics in the community are called community-acquired respiratory viruses (CARVs). CARVs include RNA viruses such as human rhinovirus, human respiratory syncytial virus, human parainfluenza virus, human coronavirus, human metapneumovirus, human enterovirus, human parechovirus, and DNA viruses such as human adenovirus and human bocavirus. Needless to say, influenza-like illness (ILI) is caused not only by influenza virus but also by other CARVs. Epidemiological studies targeting ILI patients revealed that CARVs other than influenza are universally detected, predominantly the rhinovirus. However, the viral etiology of ILI is affected by many factors such as the study population, season, setting (community or outpatient or inpatient), and regions. Previous studies investigated the utility of fever and cough as clinical diagnosis markers of influenza, nonetheless the sensitivity and specificity were modest. Since CARVs fairly cause respiratory and general symptoms including fever, cough, coryza, sore throat, headache, myalgia, and chills, predicting the causative virus by clinical symptoms is further difficult in most cases, except for diseases presenting with unique features such as laryngotracheobronchitis (croup), herpangina, and hand-foot-and-mouth disease. Consequently, clinical manifestations are not reliable enough for the differential diagnosis between influenza and other CARVs infection, therefore a rapid antigen test or molecular assay is critical to confirm the causative virus.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 159.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Price WH. The isolation of a new virus associated with respiratory clinical disease in humans. Proc Natl Acad Sci U S A. 1956;42(12):892–6.

    Article  CAS  Google Scholar 

  2. Bochkov YA, Grindle K, Vang F, Evans MD, Gern JE. Improved molecular typing assay for rhinovirus species A, B, and C. J Clin Microbiol. 2014;52:2461–71. https://doi.org/10.1128/JCM.00075-14.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Ljubin-Sternak S, Mestrovic T, Ivkovic-Jurekovic I, Kolaric B, Slovic A, Forcic D, et al. The emerging role of rhinoviruses in lower respiratory tract infections in children - clinical and molecular epidemiological study from Croatia, 2017-2019. Front Microbiol. 2019;10:2737. https://doi.org/10.3389/fmicb.2019.02737.

    Article  PubMed  PubMed Central  Google Scholar 

  4. Gutman JA, Peck AJ, Kuypers J, Boeckh M. Rhinovirus as a cause of fatal lower respiratory tract infection in adult stem cell transplantation patients: a report of two cases. Bone Marrow Transplant. 2007;40(8):809–11. https://doi.org/10.1038/sj.bmt.1705827.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Seo S, Waghmare A, Scott EM, Xie H, Kuypers JM, Hackman RC, et al. Human rhinovirus detection in the lower respiratory tract of hematopoietic cell transplant recipients: association with mortality. Haematologica. 2017;102(6):1120–30. https://doi.org/10.3324/haematol.2016.153767.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Dougherty RH, Fahy JV. Acute exacerbations of asthma: epidemiology, biology and the exacerbation-prone phenotype. Clin Exp Allergy. 2009;39(2):193–202. https://doi.org/10.1111/j.1365-2222.2008.03157.x.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Hewitt R, Farne H, Ritchie A, Luke E, Johnston SL, Mallia P. The role of viral infections in exacerbations of chronic obstructive pulmonary disease and asthma. Ther Adv Respir Dis. 2016;10(2):158–74. https://doi.org/10.1177/1753465815618113.

    Article  PubMed  Google Scholar 

  8. Jackson DJ, Makrinioti H, Rana BM, Shamji BW, Trujillo-Torralbo MB, Footitt J, et al. IL-33-dependent type 2 inflammation during rhinovirus-induced asthma exacerbations in vivo. Am J Respir Crit Care Med. 2014;190(12):1373–82. https://doi.org/10.1164/rccm.201406-1039OC.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Message SD, Laza-Stanca V, Mallia P, Parker HL, Zhu J, Kebadze T, et al. Rhinovirus-induced lower respiratory illness is increased in asthma and related to virus load and Th1/2 cytokine and IL-10 production. Proc Natl Acad Sci U S A. 2008;105(36):13562–7. https://doi.org/10.1073/pnas.0804181105.

    Article  PubMed  PubMed Central  Google Scholar 

  10. Mallia P, Message SD, Gielen V, Contoli M, Gray K, Kebadze T, et al. Experimental rhinovirus infection as a human model of chronic obstructive pulmonary disease exacerbation. Am J Respir Crit Care Med. 2011;183(6):734–42. https://doi.org/10.1164/rccm.201006-0833OC.

    Article  PubMed  Google Scholar 

  11. Chanock R, Roizman B, Myers R. Recovery from infants with respiratory illness of a virus related to chimpanzee coryza agent (CCA). I. Isolation, properties and characterization. Am J Hyg. 1957;66(3):281–90. https://doi.org/10.1093/oxfordjournals.aje.a119901.

    Article  CAS  PubMed  Google Scholar 

  12. Martinello RA, Chen MD, Weibel C, Kahn JS. Correlation between respiratory syncytial virus genotype and severity of illness. J Infect Dis. 2002;186(6):839–42. https://doi.org/10.1086/342414.

    Article  PubMed  Google Scholar 

  13. Espinosa Y, San Martin C, Torres AA, Farfan MJ, Torres JP, Avadhanula V, et al. Genomic loads and genotypes of respiratory syncytial virus: viral factors during lower respiratory tract infection in Chilean hospitalized infants. Int J Mol Sci. 2017;18(3):654. https://doi.org/10.3390/ijms18030654.

    Article  PubMed Central  Google Scholar 

  14. Glezen WP, Taber LH, Frank A, Kasel J. Risk of primary infection and reinfection with respiratory syncytial virus. Am J Dis Child. 1986;40:543–6.

    Google Scholar 

  15. Hall CB, Weinberg GA, Iwane MK, Blumkin AK, Edwards KM, Staat MA, et al. The burden of respiratory syncytial virus infection in young children. N Engl J Med. 2009;360(6):588–98. https://doi.org/10.1056/NEJMoa0804877.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Nam HH, Ison MG. Respiratory syncytial virus infection in adults. BMJ. 2019;366:–l5021.

    Google Scholar 

  17. Chanock RM. Association of a new type of cytopathogenic myxovirus with infantile croup. J Exp Med. 1956;104:555–76.

    Article  CAS  Google Scholar 

  18. Branche AR, Falsey AR. Parainfluenza virus infection. Semin Respir Crit Care. 2016;37(4):538–54. https://doi.org/10.1055/s-0036-1584798.

    Article  Google Scholar 

  19. Russell E, Ison MG. Parainfluenza virus in the hospitalized adult. Clin Infect Dis. 2017;65(9):1570–6. https://doi.org/10.1093/cid/cix528.

    Article  CAS  PubMed  Google Scholar 

  20. Rowe WP, Huebner RJ, Gilmore LK. Isolation of a cytopathogenic agent from human adenoids undergoing spontaneous degeneration in tissue culture. Proc Soc Exp Biol Med. 1953;84(3):570–3. https://doi.org/10.3181/00379727-84-20714.

    Article  CAS  PubMed  Google Scholar 

  21. Ison MG, Hayden RT. Adenovirus. Microbiol Spectr. 2016; https://doi.org/10.1128/microbiolspec.DMIH2-0020-2015.

  22. Lynch JP III, Kajon AE. Adenovirus: epidemiology, global spread of novel serotypes, and advances in treatment and prevention. Semin Respir Crit Care Med. 2016;37(4):586–602. https://doi.org/10.1055/s-0036-1584923.

    Article  PubMed  PubMed Central  Google Scholar 

  23. Low SY, Tan TT, Lee CH, Loo CM, Chew HC. Severe adenovirus pneumonia requiring extracorporeal membrane oxygenation support--serotype 7 revisited. Respir Med. 2013;107(11):1810–3. https://doi.org/10.1016/j.rmed.2013.09.008.

    Article  CAS  PubMed  Google Scholar 

  24. Sun B, He H, Wang Z, Qu J, Li X, Ban C, et al. Emergent severe acute respiratory distress syndrome caused by adenovirus type 55 in immunocompetent adults in 2013: a prospective observational study. Crit Care. 2014;18(4):456. https://doi.org/10.1186/s13054-014-0456-6.

    Article  PubMed  PubMed Central  Google Scholar 

  25. Kuschner RA, Russell KL, Abuja M, Bauer KM, Faix DJ, Hait H, et al. A phase 3, randomized, double-blind, placebo-controlled study of the safety and efficacy of the live, oral adenovirus type 4 and type 7 vaccine, in U.S. military recruits. Vaccine. 2013;31(28):2963–71. https://doi.org/10.1016/j.vaccine.2013.04.035.

    Article  CAS  PubMed  Google Scholar 

  26. Tyrrell DA, Bynoe ML. Cultivation of a novel type of common-cold virus in organ cultures. Br Med J. 1965;1(5448):1467–70. https://doi.org/10.1136/bmj.1.5448.1467.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Cui J, Li F, Shi ZL. Origin and evolution of pathogenic coronaviruses. Nat Rev Microbiol. 2019;17(3):181–92. https://doi.org/10.1038/s41579-018-0118-9.

    Article  CAS  PubMed  Google Scholar 

  28. Zhu N, Zhang D, Wang W, Li X, Yang B, Song J, et al. A novel coronavirus from patients with pneumonia in China, 2019. N Engl J Med. 2020;382(8):727–33. https://doi.org/10.1056/NEJMoa2001017.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Ksiazek TG, Erdman D, Goldsmith CS, Zaki SR, Peret T, Emery S, et al. A novel coronavirus associated with severe acute respiratory syndrome. N Engl J Med. 2003;348(20):1953–66. https://doi.org/10.1056/NEJMoa030781.

    Article  CAS  PubMed  Google Scholar 

  30. Zaki AM, van Boheemen S, Besterbroer TN, Osterhaus AD, Fouchier RA. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N Engl J Med. 2012;367(19):1814–20. https://doi.org/10.1056/NEJMoa1211721.

    Article  CAS  PubMed  Google Scholar 

  31. van den Hoogen BG, de Jong JC, Groen J, Kuiken T, de Groot R, Fouchier RAM, et al. A newly discovered human pneumovirus isolated from young children with respiratory tract disease. Nat Med. 2001;7(6):719–24. https://doi.org/10.1038/89098.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Williams JV, Harris PA, Tollefson SJ, Halburnt-Rush LL, Pingsterhaus JM, Edwards KM, et al. Human metapneumovirus and lower respiratory tract disease in otherwise healthy infants and children. N Engl J Med. 2004;350(5):443–50. https://doi.org/10.1056/NEJMoa025472.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. Karimata Y, Kinjo T, Parrott G, Uehara A, Nabeya D, Haranaga S, et al. Clinical features of human metapneumovirus pneumonia in non-immunocompromised patients: an investigation of three long-term care facility outbreaks. J Infect Dis. 2018;218(6):868–75. https://doi.org/10.1093/infdis/jiy261.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  34. Allander T, Tammi MT, Eriksson M, Bjerkner A, Tiveljung-Lindell A, Andersson B. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci U S A. 2005;102(36):12891–6. https://doi.org/10.1073/pnas.0504666102.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  35. Broccolo F, Falcone V, Esposito S, Toniolo A. Human bocaviruses: possible etiologic role in respiratory infection. J Clin Virol. 2015;72:75–81. https://doi.org/10.1016/j.jcv.2015.09.008.

    Article  CAS  PubMed  Google Scholar 

  36. Dunn JJ. Enteroviruses and parechoviruses. Microbiol Spectr. 2016; https://doi.org/10.1128/microbiolspec.DMIH2-0006-2015.

  37. Olijve L, Jennings L, Walls T. Human parechovirus: an increasingly recognized cause of sepsis-like illness in young infants. Clin Microbiol Rev. 2017;31(1):e00047–17. https://doi.org/10.1128/CMR.00047-17.

    Article  PubMed  PubMed Central  Google Scholar 

  38. Fitzner J, Qasmieh S, Mounts AW, Alexander B, Besselaar T, Briand S, et al. Revision of clinical case definitions: influenza-like illness and severe acute respiratory infection. Bull World Health Organ. 2018;96(2):122–8. https://doi.org/10.2471/BLT.17.194514.

    Article  PubMed  Google Scholar 

  39. Taylor S, Lopez P, Weckx L, Borja-Tabora C, Ulloa-Gutierrez R, Lazcano-Ponce E, et al. Respiratory viruses and influenza-like illness: epidemiology and outcomes in children aged 6 months to 10 years in a multi-country population sample. J Infect. 2017;74(1):29–41. https://doi.org/10.1016/j.jinf.2016.09.003.

    Article  PubMed  Google Scholar 

  40. Chang ML, Jordan-Villegas A, Evans A, Bhore R, Brock E, Mejias A, et al. Respiratory viruses identified in an urban children’s hospital emergency department during the 2009 influenza a(H1N1) pandemic. Pediatr Emerg Care. 2012;28(10):990–7. https://doi.org/10.1097/PEC.0b013e31826ca980.

    Article  PubMed  Google Scholar 

  41. Al-Romaihi HE, Smatti MK, Ganesan N, Nadeem S, Farag E, Coyle PV, et al. Epidemiology of respiratory infections among adults in Qatar (2012-2017). PLoS One. 2019;14(6):e0218097. https://doi.org/10.1371/journal.pone.0218097.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. Tan XQ, Zhao X, Lee VJ, Loh JP, Tan BH, Koh WHV, et al. Respiratory viral pathogens among Singapore military servicemen 2009-2012: epidemiology and clinical characteristics. BMC Infect Dis. 2014;14:204. https://doi.org/10.1186/1471-2334-14-204.

    Article  PubMed  PubMed Central  Google Scholar 

  43. Noh JY, Song JY, Cheong HJ, Choi WS, Lee J, Lee JS, et al. Laboratory surveillance of influenza-like illness in seven teaching hospitals, South Korea: 2011-2012 season. PLoS One. 2013;8(5):e64295. https://doi.org/10.1371/journal.pone.0064295.

    Article  PubMed  PubMed Central  Google Scholar 

  44. Todd S, Huong NTC, Thanh NTL, Vy NHT, Hung NT, Thao TTN, et al. Primary care influenza-like illness surveillance in Ho Chi Minh City, Vietnam 2013-2015. Influenza Other Respir Viruses. 2018;12(5):623–31. https://doi.org/10.1111/irv.12574.

    Article  PubMed  PubMed Central  Google Scholar 

  45. Falsey AR, McElhaney JE, Beran J, van Essen GA, Duval X, Esen M, et al. Respiratory syncytial virus and other respiratory viral infections in older adults with moderate to severe influenza-like illness. J Infect Dis. 2014;209(12):1873–81. https://doi.org/10.1093/infdis/jit839.

    Article  PubMed  PubMed Central  Google Scholar 

  46. Bellei N, Carraro E, Perosa A, Watanabe A, Arruda E, Granato C. Acute respiratory infection and influenza-like illness viral etiologies in Brazilian adults. J Med Virol. 2008;80(10):1824–7. https://doi.org/10.1002/jmv.21295.

    Article  PubMed  PubMed Central  Google Scholar 

  47. Louie JK, Hacker JK, Gonzales R, Mark J, Maselli JH, Yagi S, Drew WL. Characterization of viral agents causing acute respiratory infection in a San Francisco university medical center clinic during the influenza season. Clin Infect Dis. 2005;41(6):822–8. https://doi.org/10.1086/432800.

    Article  PubMed  PubMed Central  Google Scholar 

  48. Jain A, Prakash S, Jain B. Contribution of non- influenza respiratory viruses in causation of influenza like illness (ILI) during influenza epidemic: a laboratory based study. Clin Epidemiol Glob Health. 2017; https://doi.org/10.1016/j.cegh.2017.06.001.

  49. Michiels B, Thomas I, Van Royen P, Coenen S. Clinical prediction rules combining signs, symptoms and epidemiological context to distinguish influenza from influenza-like illnesses in primary care: a cross sectional study. BMC Fam Pract. 2011;12:4. https://doi.org/10.1186/1471-2296-12-4.

    Article  PubMed  PubMed Central  Google Scholar 

  50. Eskin B, Levy R. Evidence-based emergency medicine/rational clinical examination abstract. Does this patient have influenza? Ann Emerg Med. 2007;49(1):103–5. https://doi.org/10.1016/j.annemergmed.2006.08.016.

    Article  PubMed  Google Scholar 

  51. Ebell MH, Afonso A. A systematic review of clinical decision rules for the diagnosis of influenza. Ann Fam Med. 2011;9(1):69–77. https://doi.org/10.1370/afm.1192.

    Article  PubMed  PubMed Central  Google Scholar 

  52. Meissner HC. Viral bronchiolitis in children. N Engl J Med. 2016;374(1):62–72. https://doi.org/10.1056/NEJMra1413456.

    Article  CAS  PubMed  Google Scholar 

  53. Smith DK, McDermott AJ, Sullivan JF. Croup: diagnosis and management. Am Fam Physician. 2018;97:575–80.

    PubMed  Google Scholar 

  54. Zhang N, Wang L, Deng X, Liang R, Su M, He C, et al. Recent advances in the detection of respiratory virus infection in humans. J Med Virol. 2020;92(4):408–17. https://doi.org/10.1002/jmv.25674.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Singapore Pte Ltd.

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Kinjo, T., Fujita, J. (2021). Differential Diagnosis Between Influenza and Other Respiratory Viral Infections: What Are the Differential Diagnoses?. In: Fujita, J. (eds) Influenza. Respiratory Disease Series: Diagnostic Tools and Disease Managements. Springer, Singapore. https://doi.org/10.1007/978-981-15-9109-9_8

Download citation

  • DOI: https://doi.org/10.1007/978-981-15-9109-9_8

  • Published:

  • Publisher Name: Springer, Singapore

  • Print ISBN: 978-981-15-9108-2

  • Online ISBN: 978-981-15-9109-9

  • eBook Packages: MedicineMedicine (R0)

Publish with us

Policies and ethics