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Abstract

Nearly 25 years after the discovery of the human immunodeficiency virus type 1 (HIV-1) effective control of the AIDS pandemic remains elusive. At the root of this challenge is the evolution of this virus to elude immune control. Error-prone nature of replication and retro-transcription is the hallmark of this virus. This fidelity of replication in HIV-1 is due to the absence of proof-reading/repair and post-replicative error correction mechanisms that normally operate during replication of DNA Viruses. Advances in sequencing technology and expanded disease surveillance have allowed researchers to characterize the variation in HIV-1 around the world and within individual patient overtime. Although HIV-1 has been classified into distinct subtypes, the classification does not reflect dynamic genetic evolution of HIV-1 through which new strains are constantly emerging. The resultant viral diversity has implications for differential rates of disease progression in different geographical areas, differential responses to antiretroviral therapy (including the development of resistance), and vaccine development. In this review evolution of HIV-1 in India is discussed.

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References

  1. Simon F, Mauclere P, Roques P, Loussert-Ajaka I, Muller-Trutwin MC, Saragosti S Georges-Courbot MC, barre-Sinoussi F, Brun-Vezinet F (1998) Identification of a new human-immunodeficiency virus type 1 distinct from group M and group O. Nat Med 4:1032–1057

    Article  PubMed  CAS  Google Scholar 

  2. Korber B, Theiler J, Wolinsky S (1998) Limitation of a molecular clock applied to considerations of the origin of HIV-1. Science 280:1868–1871

    Article  PubMed  CAS  Google Scholar 

  3. Gao F, Vidal N, Li Y, Trask SA, Chen Y, Kostrikis LG, Ho DD, Kim J, Oh MD, Choe K, Salminen M, Robertson DL, Shaw GM, Hahn BH, Peeters M (2001) Evidence of two distinct sub-subtypes within the HIV-1 subtype A radiation. AIDS Res Hum Retroviruses 17:675–688

    Article  PubMed  Google Scholar 

  4. Bobkov AF, Kazennova EV, Selimova LM, Khanina TA, Ryabov GS, Bobkova MR, Sukhanova AL, Kravchenko AV, Ladnaya NN, Weber JN, Pokrovsky W (2004) Temporal trends in the HIV-1 epidemic in Russia: Predominance of subtype A. J Med Virol 74: 191–196

    Article  PubMed  CAS  Google Scholar 

  5. Jeeninga RE, Hoogenkamp M, Armand-Ugon M, de Baar M, Verhoef K, Berkhout B (2000) Functional differences between the long terminal repeat transcriptional promoters of human immunodeficiency virus type 1 subtypes A through G. J Virol 74:3740–3751

    Article  PubMed  CAS  Google Scholar 

  6. Gao F, Robertson DL, Carruthers CD, Morrison SG, Jian B, Chen Y, Barré-Sinoussi F, Girard M, Srinivasan A, Abimiku AG, Shaw GM, Sharp PM, Hahn BH (1998) A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1. J Virol 72:5 80-5698

    Google Scholar 

  7. Salemi M, de Oliveira T, Soares MA, Pybus O, Dumans AT, Vandamme AM, Tanuri A, Cassol S, Fitch WM (2005) Different epidemic potentials of the HIV-1B and C subtypes. J Mol Evol 60:598–605

    Article  PubMed  CAS  Google Scholar 

  8. Thomson MM, Najera R (2001) Travel and the introduction of human immunodeficiency virus type 1 non-B subtype genetic forms into Western countries. Clin Infect Dis 32: 1732–1737

    Article  PubMed  CAS  Google Scholar 

  9. Couturier E, Damond F, Roques P, Fleury H, Barin F, Brunet JB, Brun-Vézinet F, Simon F (2000) HIV-1 diversity in France, 1996–1998. The AC 11 laboratory network. AIDS 14:289–296

    Article  PubMed  CAS  Google Scholar 

  10. Salminen MO, Johansson B, Sönnerborg A, Ayehunie S, Gotte D, Leinikki P, Burke DS, McCutchan FE (1996) Full-length sequence of an Ethiopian human immunodeficiency virus type 1 (HIV-1) isolate of genetic subtype C. AIDS Res Hum Retroviruses 20:1329–1339

    Article  Google Scholar 

  11. McCormack GP, Glynn JR, Crampin AC, Sibande F, Mulawa D, Bliss L, Broadbent P, Abarca K, Pönnighaus JM, Fine PE, Clewley JP (2002) Early evolution of the human immunodeficiency virus type 1 subtype C epidemic in rural Malawi. J Virol 76: 12890–12899

    Article  PubMed  CAS  Google Scholar 

  12. Neilson JR, John GC, Carr JK, Lewis P, Kreiss JK, Jackson S, Nduati RW, Mbori-Ngacha D, Panteleeff DD, Bodrug S, Giachetti C, Bott MA, Richardson BA, Bwayo J, Ndinya-Achola J, Overbaugh J (1999) Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya. J Virol 73:4393–4403

    PubMed  CAS  Google Scholar 

  13. Vidal N, Peeters M, Mulanga-Kabeya C, Nzilambi N, Robertson D, Ilunga W, Sema H, Tshimanga K, Bongo B, Delaporte E (2000) Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa. J Virol 74:10498–10507

    Article  PubMed  CAS  Google Scholar 

  14. Yu XF, Chen J, Shao Y, Beyrer C, Lai S (1998) Two subtypes of HIV-1 among injection-drug users in southern China. Lancet 351:1250

    Article  PubMed  CAS  Google Scholar 

  15. Tatt ID, Barlow KL, Clewley JP, Gill ON, Parry JV (2004) Surveillance of HIV-1 subtypes among heterosexuals in England and Wales, 1997–2000. J Acquir Immune Defic Syndr 36:1092–1099

    Article  PubMed  Google Scholar 

  16. Dietrich U, Grez M, von Briesen H, Panhans B, Geissendörfer M, Kühnel H, Maniar J, Mahambre G, Becker WB, Becker ML, et al. (1994) HIV-1 strains from India are highly divergent from prototypic African and US/European strains, but are linked to a South African isolate. AIDS 7:23–27

    Article  Google Scholar 

  17. Grez M, Dietrich U, Balfe P, von Briesen H, Maniar JK, Mahambre G, Delwart EL, Mullins JI, Rübsamen-Waigmann H (1994) Genetic analysis of human immunodeficiency virus type 1 and 2 (HIV-1 and HIV-2) mixed infections in India reveals a recent spread of HIV-1 and HIV-2 from a single ancestor for each of these viruses. J Virol 68:2161–2168

    PubMed  CAS  Google Scholar 

  18. Voevodin A, Crandall KA, Seth P, al Mufti S (1996) HIV type 1 subtypes B and C from new regions of India and Indian and Ethiopian expatriates in Kuwait. AIDS Res Hum Retroviruses 12(7):641–643

    Article  PubMed  CAS  Google Scholar 

  19. Maitra A, Singh B, Banu S, Deshpande A, Robbins K, Kalish ML, Broor S, Seth P (1999) Subtypes of HIV type 1 circulating in India: Partial envelope sequences. AIDS Res Hum Retroviruses 15:941–944

    Article  PubMed  CAS  Google Scholar 

  20. Mandal D, Jana S, Bhattacharya SK, Chakrabarti S (2002) HIV type 1 subtypes circulating in eastern and northeastern regions of India. AIDS Res Hum Retroviruses 18:1219-1227

    Google Scholar 

  21. Gupta RM, Prasad VVSP, Rai A, Seth P (2005) Analysis of HIV type 1 subtype C full-length gag gene sequences from India: Novel observations and plausible implications. AIDS Res Hum Retroviruses 21:1066–1072

    Article  PubMed  CAS  Google Scholar 

  22. Tripathy SP, Kulkarni SS, Jadhav SD, Agnihotri KD, Jere AJ, Kurle SN, Bhattacharya SK, Singh K, Tripathy SP, Paranjape RS (2005) Subtype B and subtype C HIV type-1 recombinants in the northeastern state of Manipur, India. AIDS Res Hum Retroviruses 21:152–157

    Article  PubMed  CAS  Google Scholar 

  23. Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC (1998) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73:152–160

    Google Scholar 

  24. Siddappa NB, Dash PK, Mahadevan A, Desai A, Jayasuryan N, Ravi V, Satishchandra P, Shankar SK, Ranga U (2005) Identification of unique B/C recombinant strains of HIV-1 in the southern state of Karnataka, India. AIDS 19:1426–1429

    Article  PubMed  Google Scholar 

  25. Malim MH, Emerman M (2001) HIV-1 sequence variation: Drift, shift and attenuation. Cell 104:469–472

    Article  PubMed  CAS  Google Scholar 

  26. Shankarappa R, Chatterjee R, Learn GH, Neogi D, Ding M, Roy P, Ghosh A, Kingsley L, Harrison L, Mullins JI, Gupta P (2001) Human immunodeficiency virus type 1 env sequences from Calcutta in eastern India: Identification of features that distinguish subtype C sequences in India from other subtype C sequences. J Virol 75:10479–10487

    Article  PubMed  CAS  Google Scholar 

  27. Khan IF, Vajpayee M, Prasad VV, Seth P (2007) Genetic diversity of HIV type 1 subtype C env gene sequences from India. AIDS Res Hum Retroviruses 23:934–940

    Article  PubMed  CAS  Google Scholar 

  28. Kalpana A, Srikanth T, Abhay J, Sushama J, Swarali K, Ramesh P (2004) gp120 sequences from HIV type 1 subtype C early seroconverters in India. AIDS Res Hum Retroviruses 20:889–894

    Article  PubMed  CAS  Google Scholar 

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© 2010 The National Academy of Sciences, India

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Seth, P. (2010). Evolution of HIV-1 in India. In: Sharma, V.P. (eds) Nature at Work: Ongoing Saga of Evolution. Springer, New Delhi. https://doi.org/10.1007/978-81-8489-992-4_7

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