Abstract
Endocrine-disrupting chemicals (EDCs) could evoke untold endocrine-related detrimental effects on humans and wildlife. To minimize the potential deleterious effects of EDCs on the endocrine system of living organisms, we should identify and screen potential EDCs from the current myriad of commercially used chemicals. Computational models and software have been increasingly recognized as a valuable, effective, and powerful high-throughput virtual screening tool that could be employed to screen potential EDCs. To date, the number of available predictive models and software for nonreceptor-mediated targets were less than that of nuclear receptors. Importantly, tools with predictive models for hormone transport proteins (one critical nonreceptor-mediated target) were scarce. Thus, it is a driving imperative to develop more models related to nonreceptor-mediated targets and to deploy tools capable of nonreceptor-mediated target modeling. In this chapter, we introduce a high-throughput virtual screening tool named “ED Profiler,” which has been integrated with (quantitative) structure–activity relationship ((Q)SAR) models for some nonreceptor-mediated targets (e.g. human and fish hormone transport proteins) and could be used to predict the potential disrupting effects of EDCs on nonreceptor-mediated targets. The (Q)SAR models were derived using typical machine learning algorithms, i.e. k-nearest neighbor (kNN) or decision tree. The ED Profiler was developed and deployed in Python. Leveraging the power of ED Profiler, we could categorize whether a given substance within the applicability domain of corresponding (Q)SAR) models was a potential nonreceptor-mediated target disruptor or not.
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The study was supported by the National Natural Science Foundation of China (No. 22176097), China Postdoctoral Science Foundation (2020T130301, 2020M671502); Jiangsu Planned Projects for Postdoctoral Research Funds (2020Z288).
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Yang, X., Liu, H., Kusko, R., Hong, H. (2023). ED Profiler: Machine Learning Tool for Screening Potential Endocrine-Disrupting Chemicals. In: Hong, H. (eds) Machine Learning and Deep Learning in Computational Toxicology. Computational Methods in Engineering & the Sciences. Springer, Cham. https://doi.org/10.1007/978-3-031-20730-3_10
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