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Parallel Evolution of Antibody Affinity and Thermal Stability for Optimal Biotherapeutic Development

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Antibody Engineering

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1827))

Abstract

Naïve antibody libraries provide a rich resource for the identification of binding domains against targets of therapeutic interest. Being naïve in nature means a lack in antigen bias, resulting in a breadth of diversity with respect to epitopes that can be successfully targeted. In combination with display-based technology platforms, selection strategies allow for the generation of ortholog cross-reactive binding domains which enable critical preclinical proof-of-concept studies. However, naïve binding domains often suffer from low target affinity. In addition, construction of large naïve libraries results in non-native pairing of heavy and light v-domains which can present a challenge to molecular stability. Here we describe effective methods for the parallel evolution of antibody affinity and thermal stability which couple mutant antibody library phage display with carefully designed selection strategies.

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References

  1. Bargou R, Leo E, Zugmaier G, Klinger M et al (2008) Tumor regression in cancer patients by very low doses of a T cell-engaging antibody. Science 321:974–977

    Article  CAS  PubMed  Google Scholar 

  2. Topp MS, Gokbuget N, Zugmaier G, Degenhard E et al (2012) Long-term follow-up of hematologic relapse-free survival in a phase 2 study of blinatumomab in patients with MRD in B-lineage ALL. Blood 120:5185–5187

    Article  CAS  PubMed  Google Scholar 

  3. Mabry R, Gilbertson DG, Frank A, Vu T et al (2010) A dual-targeting PDGFRbeta/VEGF-A molecule assembled from stable antibody fragments demonstrates anti-angiogenic activity in vitro and in vivo. MAbs 2:20–34

    Article  PubMed  PubMed Central  Google Scholar 

  4. Mabry R, Lewis KE, Moore M, McKernan PA, Bukowski TR, Bontadelli K, Brender T, Okada S, Lum K, West J et al (2010) Engineering of stable bispecific antibodies targeting IL-17A and IL-23. Protein Eng Des Sel 23:115–127

    Article  CAS  PubMed  Google Scholar 

  5. Orcutt KD, Ackerman ME, Cieslewicz M et al (2009) A modular IgG-scFv bispecific antibody topology. Protein Eng Des Sel 23(4):221–228

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Michaelson JS, Demarest SJ et al (2009) Anti-tumor activity of stability-engineered IgG-like bispecific antibodies targeting TRAIL-R2 and LTbetaR. MAbs 1:128–141

    Article  PubMed  PubMed Central  Google Scholar 

  7. Miller BR, Demarest SJ, Lugovskoy A, Huang F, Wu X, Snyder WB, Croner LJ, Wang N, Amatucci A, Michaelson JS et al (2010) Stability engineering of scFvs for the development of bispecific and multivalent antibodies. Protein Eng Des Sel 23:549–557

    Article  CAS  PubMed  Google Scholar 

  8. Jordan JL, Arndt JW et al (2009) Structural understanding of stabilization patterns in engineered bispecific Ig-like antibody molecules. Proteins 77:832–841

    Article  CAS  PubMed  Google Scholar 

  9. Andris-Widhopf J, Rader C, Steinberger P, fuller R, Barbas CF III (2000) Methods for the generation of chicken monoclonal antibody fragments by phage display. J Immunol Methods 242:159–181

    Article  CAS  PubMed  Google Scholar 

  10. Finlay WJ, Bloom L, Varghese S, Autin B, Cunningham O (2017) Optimized generation of high-affinity, high-specificity single-chain Fv antibodies from multi-antigen immunized chickens. Methods Mol Biol 1485:319–338

    Article  CAS  PubMed  Google Scholar 

  11. Bostrom J, Lee CV, Haber L, Fuh G (2009) Improving antibody binding affinity and specificity for therapeutic development. In: Dimitrov A (ed) Therapeutic antibodies. Methods in molecular biology (methods and protocols), vol 525. Humana Press, New York

    Google Scholar 

  12. Fennell BJ, McDonnell B, Tam AS, Cunningham O et al (2013) CDR-restricted engineering of native human scFvs creates highly stable and soluble bifunctional antibodies for subcutaneous delivery. MAbs 5(6):882–895

    Article  PubMed  PubMed Central  Google Scholar 

  13. Jespers L, Schon O, Famm K, Winter G (2004) Aggregation-resistant domain antibodies selected on phage by heat denaturation. Nat Biotechnol 22:1161–1165

    Article  CAS  PubMed  Google Scholar 

  14. Finlay WJ, Cunningham O et al (2009) Affinity maturation of a humanized rat antibody for anti-rage therapy: comprehensive mutagenesis reveals a high level of mutational plasticity both inside and outside the complementarity-determining regions. J Mol Biol 388(3):541–558

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Brian Fennell .

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Franklin, E., Cunningham, O., Fennell, B. (2018). Parallel Evolution of Antibody Affinity and Thermal Stability for Optimal Biotherapeutic Development. In: Nevoltris, D., Chames, P. (eds) Antibody Engineering. Methods in Molecular Biology, vol 1827. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8648-4_23

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  • DOI: https://doi.org/10.1007/978-1-4939-8648-4_23

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-8647-7

  • Online ISBN: 978-1-4939-8648-4

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