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Coexpression and Copurification of RNA–Protein Complexes in Escherichia coli

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RNA Scaffolds

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2323))

Abstract

For structural, biochemical, or pharmacological studies, it is required to have pure RNA in large quantities. We previously devised a generic approach that allows for efficient in vivo expression of recombinant RNA in Escherichia coli. We have extended the “tRNA scaffold” method to RNA–protein coexpression in order to express and purify RNA by affinity in native condition. As a proof of concept, we present the expression and the purification of the AtRNA-mala in complex with the MS2 coat protein.

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References

  1. Masson JM, Miller JH (1986) Expression of synthetic tRNA genes under the control of a synthetic promoter. Gene 47:179–183

    Article  CAS  Google Scholar 

  2. Meinnel T, Mechulam Y, Fayat G (1988) Fast purification of a functional elongator tRNAmet expressed from a synthetic gene in vivo. Nucleic Acids Res 16:8095–8096

    Article  CAS  Google Scholar 

  3. Tisné C, Rigourd M, Marquet R, Ehresmann C, Dardel F (2000) NMR and biochemical characterization of recombinant human tRNA(Lys)3 expressed in Escherichia coli: identification of posttranscriptional nucleotide modifications required for efficient initiation of HIV-1 reverse transcription. RNA 6:1403–1412

    Article  Google Scholar 

  4. Wallis NG, Dardel F, Blanquet S (1995) Heteronuclear NMR studies of the interactions of 15N-labeled methionine-specific transfer RNAs with methionyltRNA transformylase. Biochemistry 34:7668–7677

    Article  CAS  Google Scholar 

  5. Engelke DR, Hopper AK (2006) Modified view of tRNA: stability amid sequence diversity. Mol Cell 21:144–145

    Article  CAS  Google Scholar 

  6. Ponchon L, Dardel F (2007) Recombinant RNA technology: the tRNA scaffold. Nat Methods 4:571–576

    Article  CAS  Google Scholar 

  7. Ponchon L, Beauvais G, Nonin-Lecomte S, Dardel F (2009) A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold. Nat Protoc 4:947–959

    Article  CAS  Google Scholar 

  8. Pasloske BL, Walkerpeach CR, Obermoeller RD, Winkler M, DuBois DB (1998) Armored RNA technology for production of ribonuclease-resistant viral RNA controls and standards. J Clin Microbiol 36:3590–3594

    Article  CAS  Google Scholar 

  9. Fang PY, Gómez Ramos LM, Holguin SY et al (2017) Functional RNAs: combined assembly and packaging in VLPs. Nucleic Acids Res 45:3519–3527

    Article  CAS  Google Scholar 

  10. Schwarz-Schilling M, Dupin A, Chizzolini F, Krishnan S, Mansy SS, Simmel FC (2018) Optimized assembly of a multifunctional RNA-protein nanostructure in a cell-free gene expression system. Nano Lett 18:2650–2657

    Article  CAS  Google Scholar 

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Correspondence to Luc Ponchon .

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El Khouri, M. et al. (2021). Coexpression and Copurification of RNA–Protein Complexes in Escherichia coli. In: Ponchon, L. (eds) RNA Scaffolds. Methods in Molecular Biology, vol 2323. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1499-0_6

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  • DOI: https://doi.org/10.1007/978-1-0716-1499-0_6

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1498-3

  • Online ISBN: 978-1-0716-1499-0

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