Abstract
Testicular germ cell tumors are among the most common malignancies seen in children and young adults. Genomic studies have identified characteristic molecular profiles in testicular cancer, which are associated with histologic subtypes and may predict clinical behavior including treatment responses. Emerging molecular technologies analyzing tumor genomics, transcriptomics, and proteomics may now guide precision management of testicular tumors. Laser-assisted microdissection methods such as laser capture microdissection efficiently isolate selected tumor cells from routine pathology specimens, avoiding contamination from nontarget cell populations. Laser capture microdissection in combination with next generation sequencing makes precise high throughput genetic evaluation effective and efficient. The use of laser capture microdissection (LCM) for molecular testing may translate into great benefits for the clinical management of patients with testicular cancers. This review discusses application protocols for laser-assisted microdissection to investigate testicular germ cell tumors.
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References
Cheng L, Lopez-Beltran A, Massari F, MacLennan GT, Montironi R (2018) Molecular testing for BRAF mutations to inform melanoma treatment decisions: a move toward precision medicine. Mod Pathol 31:24–38
Cheng L, Alexander RE, Maclennan GT et al (2012) Molecular pathology of lung cancer: key to personalized medicine. Mod Pathol 25:347–369
Cheng L, Zhang DY, Eble JN (2013) Molecular genetic pathology, 2nd edn. Springer, New York
Cheng L, Eble JN (2013) Molecular surgical pathology. Springer, New York
Lander ES, Linton LM, Birren B et al (2001) Initial sequencing and analysis of the human genome. Nature 409:860–921
Venter JC, Adams MD, Myers EW et al (2001) The sequence of the human genome. Science 291:1304–1351
Ledford H (2015) End of cancer-genome project prompts rethink. Nature 517:128–129
Liu J, Lichtenberg T, Hoadley KA et al (2018) An integrated TCGA pan-cancer clinical data resource to drive high-quality survival outcome analytics. Cell 173:400.e11–416.e11
Espina V, Wulfkuhle JD, Calvert VS et al (2006) Laser-capture microdissection. Nat Protoc 1:586–603
Gallagher RI, Blakely SR, Liotta LA, Espina V (2012) Laser capture microdissection: Arcturus(XT) infrared capture and UV cutting methods. Methods Mol Biol 823:157–178
Golubeva Y, Salcedo R, Mueller C, Liotta LA, Espina V (2013) Laser capture microdissection for protein and NanoString RNA analysis. Methods Mol Biol 931:213–257
Cheng L, Zhang S, MacLennan GT et al (2013) Laser-assisted microdissection in translational research: theory, technical considerations, and future applications. Appl Immunohistochem Mol Morphol 21:31–47
McClure CD, Southall TD (2015) Getting down to specifics: profiling gene expression and protein-DNA interactions in a cell type-specific manner. Adv Genet 91:103–151
Jan SZ, Vormer TL, Jongejan A et al (2017) Unraveling transcriptome dynamics in human spermatogenesis. Development 144:3659–3673
Sluka P, O’Donnell L, McLachlan RI, Stanton PG (2008) Application of laser-capture microdissection to analysis of gene expression in the testis. Prog Histochem Cytochem 42:173–201
Cheng L, Albers P, Berney DM et al (2018) Testicular cancer. Nat Rev Dis Primers 4:29
Cheng L, Lyu B, Roth LM (2017) Perspectives on testicular germ cell neoplasms. Hum Pathol 59:10–25
Ivell R, Spiess A (2002) Analysing differential gene expression in the testis. Springer-Verlag, Berlin
Rajpert-De Meyts E, McGlynn KA, Okamoto K, Jewett MA, Bokemeyer C (2016) Testicular germ cell tumours. Lancet 387:1762–1774
Yachida S, Jones S, Bozic I et al (2010) Distant metastasis occurs late during the genetic evolution of pancreatic cancer. Nature 467:1114–1117
Gerlinger M, Rowan AJ, Horswell S et al (2012) Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N Engl J Med 366:883–892
Logothetis CJ (2013) Re: intratumor heterogeneity and branched evolution revealed by multiregion sequencing. Eur Urol 64:170
Swanton C, Caldas C (2009) Molecular classification of solid tumours: towards pathway-driven therapeutics. Br J Cancer 100:1517–1522
Mitchell RT, Camacho-Moll M, Macdonald J et al (2014) Intratubular germ cell neoplasia of the human testis: heterogeneous protein expression and relation to invasive potential. Mod Pathol 27:1255–1266
Kristensen DG, Nielsen JE, Jorgensen A et al (2014) Evidence that active demethylation mechanisms maintain the genome of carcinoma in situ cells hypomethylated in the adult testis. Br J Cancer 110:668–678
Taylor-Weiner A, Zack T, O’Donnell E et al (2016) Genomic evolution and chemoresistance in germ-cell tumours. Nature 540:114–118
Necchi A, Bratslavsky G, Corona RJ et al (2020) Genomic characterization of testicular germ cell tumors relapsing after chemotherapy. Eur Urol Focus 6(1):122–130
Dorssers LCJ, Gillis AJM, Stoop H et al (2019) Molecular heterogeneity and early metastatic clone selection in testicular germ cell cancer development. Br J Cancer 120(4):444–452
Shen H, Shih J, Hollern DP et al (2018) Integrated molecular characterization of testicular germ cell tumors. Cell Rep 23:3392–3406
da Silva VL, Fonseca AF, Fonseca M et al (2017) Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis. Oncotarget 8:92966–92977
Kernek KM, Ulbright TM, Zhang S et al (2003) Identical allelic losses in mature teratoma and other histologic components of malignant mixed germ cell tumors of the testis. Am J Pathol 163:2477–2484
Anglesio MS, Papadopoulos N, Ayhan A et al (2017) Cancer-associated mutations in endometriosis without cancer. N Engl J Med 376:1835–1848
Cheng L, Gu J, Ulbright TM et al (2002) Precise microdissection of human bladder carcinomas reveals divergent tumor subclones in the same tumor. Cancer 94:104–110
Wang X, Wang M, MacLennan GT et al (2009) Evidence for common clonal origin of multifocal lung cancers. J Natl Cancer Inst 101:560–570
McCarthy RP, Wang M, Jones TD, Strate RW, Cheng L (2006) Molecular evidence for the same clonal origin of multifocal papillary thyroid carcinomas. Clin Cancer Res 12:2414–2418
Katona TM, Jones TD, Wang M et al (2006) Molecular evidence for independent origin of multifocal neuroendocrine tumors of the enteropancreatic axis. Cancer Res 66:4936–4942
Jones TD, Wang M, Sung MT et al (2006) Clonal origin of metastatic testicular teratomas. Clin Cancer Res 12:5377–5383
Cheng L, Jones TD, McCarthy RP et al (2005) Molecular genetic evidence for a common clonal origin of urinary bladder small cell carcinoma and coexisting urothelial carcinoma. Am J Pathol 166:1533–1539
Sung MT, Wang M, MacLennan GT et al (2007) Histogenesis of sarcomatoid urothelial carcinoma of the urinary bladder: evidence for a common clonal origin with divergent differentiation. J Pathol 211:420–430
Jones TD, Wang M, Eble JN et al (2005) Molecular evidence supporting field effect in urothelial carcinogenesis. Clin Cancer Res 11:6512–6519
Jones TD, Eble JN, Wang M et al (2005) Molecular genetic evidence for the independent origin of multifocal papillary tumors in patients with papillary renal cell carcinomas. Clin Cancer Res 11:7226–7233
Abbosh PH, Wang M, Eble JN et al (2008) Hypermethylation of tumor-suppressor gene CpG islands in small-cell carcinoma of the urinary bladder. Mod Pathol 21:355–362
Cheng L, Zhang S, Wang M et al (2007) Molecular genetic evidence supporting the neoplastic nature of stromal cells in ‘fibrosis’ after chemotherapy for testicular germ cell tumours. J Pathol 213:65–71
Cheng L, MacLennan GT, Zhang S et al (2004) Laser capture microdissection analysis reveals frequent allelic losses in papillary urothelial neoplasm of low malignant potential of the urinary bladder. Cancer 101:183–188
Kum JB, Ulbright TM, Williamson SR et al (2012) Molecular genetic evidence supporting the origin of somatic-type malignancy and teratoma from the same progenitor cell. Am J Surg Pathol 36:1849–1856
Cheng L, Zhang S, Eble JN et al (2012) Molecular genetic evidence supporting the neoplastic nature of fibrous stroma in testicular teratoma. Mod Pathol 25:1432–1438
Cheng L, MacLennan GT, Zhang S et al (2008) Evidence for polyclonal origin of multifocal clear cell renal cell carcinoma. Clin Cancer Res 14:8087–8093
Scicchitano MS, Dalmas DA, Boyce RW, Thomas HC, Frazier KS (2009) Protein extraction of formalin-fixed, paraffin-embedded tissue enables robust proteomic profiles by mass spectrometry. J Histochem Cytochem 57:849–860
Thavarajah R, Mudimbaimannar VK, Elizabeth J, Rao UK, Ranganathan K (2012) Chemical and physical basics of routine formaldehyde fixation. J Oral Maxillofac Pathol 16:400–405
Srinivasan M, Sedmak D, Jewell S (2002) Effect of fixatives and tissue processing on the content and integrity of nucleic acids. Am J Pathol 161:1961–1971
Wang H, Owens JD, Shih JH et al (2006) Histological staining methods preparatory to laser capture microdissection significantly affect the integrity of the cellular RNA. BMC Genomics 7:97
Xie R, Chung JY, Ylaya K et al (2011) Factors influencing the degradation of archival formalin-fixed paraffin-embedded tissue sections. J Histochem Cytochem 59:356–365
Chomczynski P, Sacchi N (2006) The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on. Nat Protoc 1:581–585
Shen C, Beroukhim R, Schumacher SE et al (2011) Genetic and functional studies implicate HIF1alpha as a 14q kidney cancer suppressor gene. Cancer Discov 1:222–235
Espina V, Heiby M, Pierobon M, Liotta LA (2007) Laser capture microdissection technology. Expert Rev Mol Diagn 7:647–657
Funding
This work was supported by the Slovak Research and Development Agency under contract No. APVV-15-0086 and Scientific Grant Agency under contract number VEGA 1/0043/18 for Michal Chovanec.
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Cheng, L. et al. (2021). Molecular Characterization of Testicular Germ Cell Tumors Using Tissue Microdissection. In: Bagrodia, A., Amatruda, J.F. (eds) Testicular Germ Cell Tumors. Methods in Molecular Biology, vol 2195. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0860-9_3
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DOI: https://doi.org/10.1007/978-1-0716-0860-9_3
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