Skip to main content
Log in

Support Vector Machine on Fluorescence Landscapes for Breast Cancer Diagnostics

  • ORIGINAL PAPER
  • Published:
Journal of Fluorescence Aims and scope Submit manuscript

Abstract

Excitation-emission matrices (EEM) and total synchronous fluorescence spectra (SFS) of normal and malignant breast tissue specimens are measured in UV–VIS spectral region to serve as data inputs in development of Support Vector Machine (SVM) based breast cancer diagnostics tool. Various input data combinations are tested for classification accuracy using SVM prediction against histopathology findings to discover the best combination regarding diagnostics sensitivity and specificity. It is shown that with EEM data SVM provided 67 % sensitivity and 62 % specificity diagnostics. With SFS data SVM provided 100 % sensitivity and specificity for a several input data combinations. Among these combinations those that require minimal data inputs are identified.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  1. Komen GS (2010) Facts for life. Racial & ethic differences. Web. http://www.komen.org/bci. accessed 2011

  2. Ramanujam N (2000) Fluorescence spectroscopy in vivo. In: Meyers RA (ed) Encyclopedia of analytical chemistry. John Willey & Sons, Ltd., Chichester, NewYork, pp 20–56

    Google Scholar 

  3. Alfano RR, Tang GC, Pradhan A, Lam W, Choy DSJ, Opher E (1987) Fluorescence spectra from cancerous and normal human breast and lung tissues. IEEE J Quantum Electron 23:1806–1811

    Article  Google Scholar 

  4. Dramicanin T, Dramicanin MD, Jokanovic V, Nikolic-Vukosavljevic D, Dimitrijevic B (2005) Three-dimensional total synchronous luminescence spectroscopy criteria for discrimination between normal and malignant breast tissues. Photochem Photobiol 81:1554–1558

    Article  PubMed  CAS  Google Scholar 

  5. Schomacker KT, Frisoli JK, Compton CC et al (1992) Ultraviolet laser-induced fluorescence of colonic tissue: basic biology and diagnostic potential. Lasers Surg Med 12:63–78

    Article  PubMed  CAS  Google Scholar 

  6. Kamath SD, Mahato KK (2007) Optical pathology using oral tissue fluorescence spectra: classification by principal component analysis and k-means nearest neighbor analysis. J Biomed Opt 12:014028

    Article  PubMed  Google Scholar 

  7. Sterenborg HJCM, Motamedi M, Wagner RF, Duvic M, Thomsen S, Jacques SL (1994) In vivo fluorescence spectroscopy and imaging of human skin tumours. Lasers Med Sci 9:191–201

    Article  Google Scholar 

  8. Koteeswaran D, Venkatesan P, Ganesan S (2003) Native fluorescence spectroscopy of blood plasma in the characterization of oral malignancy. Photochem Photobiol 78:197–204

    Article  PubMed  Google Scholar 

  9. Dramicanin T, Dimitrijevic B, Dramicanin MD (2011) Application of supervised self-organizing maps in breast cancer diagnosis by total synchronous fluorescence spectroscopy. Appl Spectrosc 65(3):293–297

    Article  PubMed  CAS  Google Scholar 

  10. Dramicanin T, Dramicanin MD, Dimitrijevic B, Jokanovic V, Lukic S (2006) Discrimination between normal and malignant breast tissues by synchronous luminescence spectroscopy. Acta Chim Slov 53:444–449

    CAS  Google Scholar 

  11. Ivancuic O (2007) Applications of support vector machines in chemistry. In: Lipkowitz KB, Cundari TR (eds) Reviews in computational chemistry, Volume 23. Wiley-VCH, Weinheim, pp 291–400

    Chapter  Google Scholar 

  12. Liu Q, Chen K, Martin M, Wintenberg A, Lenarduzzi R, Panjehpour B, Overholt F, Vo-Dinh T (2007) Development of a synchronous fluorescence imaging system and data analysis methods. Opt Exp 15:12583–12594

    Article  Google Scholar 

  13. Mujamder SK, Gupta PK (1998) Synchronous luminescence spectroscopy of human breast tissues. Proc SPIE 3252:169–178

    Article  Google Scholar 

  14. Mujamder SK, Gupta PK (2000) Synchronous luminescence spectroscopy for oral cancer diagnosis. Lasers Life Sci 9:143–151

    Google Scholar 

  15. Vengadesan N, Anbupalam T, Hemamalini S, Ebenezar J, Muthvelu K, Koteeswaran D, Aruna PR, Ganesan SC (2002) Characterization of cervical normal and abnormal tissues by synchronous luminescence spectroscopy. Proc SPIE 4613:13–17

    Article  CAS  Google Scholar 

  16. Vo-Dinh T (2000) Principle of Synchronous Luminescence (SL) technique for biomedical diagnostics. Proc SPIE 3911:42–49

    Article  Google Scholar 

  17. Chapelle O, Haffner P, Vapnik VN (1999) Support vector machines for histogram-based image classification. IEEE Trans Neural Network 10:1055–1064

    Article  CAS  Google Scholar 

  18. Vapnik VN (1995) The nature of statistical learning theory. Springer, New York

    Google Scholar 

  19. Burges CJC (1998) A tutorial on support vector machines for pattern recognition. Data Min Knowl Disc 2:121–167

    Article  Google Scholar 

  20. Pontil M, Verri A (1998) Support vector machines for 3D object recognition. IEEE Trans Pattern Anal Mach Intell 20:637–646

    Article  Google Scholar 

  21. Hagan MT, Demuth HB, Beale MH (1996) Neural network design. PWS Publishing Co., Boston

    Google Scholar 

  22. Park DC (2000) Centroid neural network for unsupervised competitive learning. IEEE Trans Neural Network 11:520–528

    Article  CAS  Google Scholar 

  23. Gader PD, Keller JM, Krishnapuram R, Chiang JH, Mohamed MA (1997) Neural and fuzzy methods in handwriting recognition. Computer 30:79–86

    Article  Google Scholar 

  24. Burbidge R, Trotter M, Buxton B, Holden S (2001) Drug design by machine learning: support vector machines for pharmaceutical data analysis. Comput Chem 26:5–14

    Article  PubMed  CAS  Google Scholar 

  25. Ding CH, Dubchak I (2001) Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics 17:349–358

    Article  PubMed  CAS  Google Scholar 

  26. Liang H, Lin Z (2001) Detection of delayed gastric emptying from electrogastrograms with support vector machine. IEEE Trans Biomed Eng 48:601–604

    Article  PubMed  CAS  Google Scholar 

  27. Mercer J (1909) Functions of positive and negative type and their connection with the theory of integral equations. Phil Trans Roy Soc Lond A 209:415–446

    Article  Google Scholar 

  28. Palmer GM, Keely PJ, Breslin TM, Ramanujam N (2003) Autofluorescence spectroscopy of normal and malignant human breast cell lines. Photochem Photobiol 78:462–469

    Article  PubMed  CAS  Google Scholar 

  29. Palmer GM, Ramanujam N (2003) Diagnosis of breast cancer using optical spetroscopy. Med Laser Appl 18:233–248

    Article  Google Scholar 

  30. Chance B, Salkovitz IA, Kovach AG (1972) Kinetics of mitochondrial flavoprotein and pyridine nucleotide in perfused heart. Am J Physiol 1:207–218

    Google Scholar 

  31. Tamura M, Hazeki O, Nioka S, Chance B (1989) In vivo study of tissue oxygen metabolism using optical and nuclear magnetic resonance spectroscopies. Annu Rev Physiol 51:813–834

    Article  PubMed  CAS  Google Scholar 

  32. Vo-Dinh T, Cullum BM (2003) Fluorescence spectroscopy for biomedical diagnostics. In: Vo-Dinh T (ed) Biomedical photonics handbook, Volume 28. CRC Press, Boca Raton, pp 1–50

    Chapter  Google Scholar 

  33. Vo-Dinh T (1978) Multicomponent analysis by synchronous luminescence spectrometry. Anal Chem 50:396–401

    Article  Google Scholar 

Download references

Acknowledgments

Authors acknowledge the support of the Ministry of Education and Science of the Republic of Serbia (project numbers 45020 and 173049).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Miroslav D. Dramićanin.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Dramićanin, T., Lenhardt, L., Zeković, I. et al. Support Vector Machine on Fluorescence Landscapes for Breast Cancer Diagnostics. J Fluoresc 22, 1281–1289 (2012). https://doi.org/10.1007/s10895-012-1070-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10895-012-1070-0

Keywords

Navigation