Skip to main content
Log in

Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites

  • Published:
Microbial Ecology Aims and scope Submit manuscript

Abstract

Numbers and activities of microorganisms were measured in the vadose zones of three arid and semiarid areas of the western United States, and the influence of water availability was determined. These low-moisture environments have vadose zones that are commonly hundreds of meters thick. The specific sampling locations chosen were on or near U.S. Department of Energy facilities: the Nevada Test Site (NTS), the Idaho National Engineering Laboratory (INEL), and the Hanford Site (HS) in southcentral Washington State. Most of the sampling locations were uncontaminated, but geologically representative of nearby locations with storage and/or leakage of waste compounds in the vadose zone. Lithologies of samples included volcanic tuff, basalt, glaciofluvial and fluvial sediments, and paleosols (buried soils). Samples were collected aseptically, either by drilling bore-holes (INEL and HS), or by excavation within tunnels (NTS) and outcrop faces (paleosols near the HS). Total numbers of microorganisms were counted using direct microscopy, and numbers of culturable microorganisms were determined using plate-count methods. Desiccation-tolerant microorganisms were quantified by plate counts performed after 24 h desiccation of the samples. Mineralization of 14C-labeled glucose and acetate was quantified in samples at their ambient moisture contents, in dried samples, and in moistened samples, to test the hypothesis that water limits microbial activities in vadose zones. Total numbers of microorganisms ranged from log 4.5 to 7.1 cells g-1 dry wt. Culturable counts ranged from log <2 to 6.7 CFU g-1 dry wt, with the highest densities occurring in paleosol (buried soil) samples. Culturable cells appeared to be desiccation-tolerant in nearly all samples that had detectable viable heterotrophs. Water limited mineralization in some, but not all samples, suggesting that an inorganic nutrient or other factor may limit microbial activities in some vadose zone environments.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Amy PS, Haldeman DL, Ringelberg D, Hall DH, Russell C (1992) Comparison of identification systems for classification of bacteria isolated from water and endolithic habitats within the deep subsurface. Appl Environ Microbiol 58:3367–3373

    Google Scholar 

  2. Arrage AA, Phelps TJ, Benoit RE, Palumbo AV, White DC (1993) Bacterial sensitivity to UV light as a model for ionizing radiation resistance. J Microbiol Methods (In press).

  3. Balkwill DL (1989) Numbers, diversity, and morphological characteristics of aerobic chemoheterotrophic bacteria in deep subsurface sediments from a site in South Carolina. Geomicrobiol J 7:33–52

    Google Scholar 

  4. Balkwill DL, Ghiorse WC (1985) Characterization of subsurface bacteria associated with two shallow aquifers in Oklahoma. Appl Environ Microbiol 50:580–588

    Google Scholar 

  5. Balkwill DL, Fredrickson JK, Thomas JM (1989) Vertical and horizontal variations in the physiological diversity of the aerobic chemoheterotrophic bacterial microflora in deep southeast coastal plain subsurface sediments. Appl Environ Microbiol 55:1058–1065

    Google Scholar 

  6. Boylen CW (1973) Survival of Arthrobacter crystallopoietes during prolonged periods of extreme desiccation. J Bacteriol 113:33–57

    Google Scholar 

  7. Boylen CW, Ensign JC (1970) Intracellular substrates for endogenous metabolism during longterm starvation of rod and spherical cells of Arthrobacter crystallopoietes. J Bacteriol 103:578–587

    Google Scholar 

  8. Brockman FJ, Kieft TL, Fredrickson JK, Bjornstad BN, Li SW, Spangenburg W, Long PE (1992) Microbiology of vadose zone paleosols in southcentral Washington state. Microb Ecol 23:279–301

    Google Scholar 

  9. Byers FM, Carr WJ, Orkild PP, Quinlivan WD, Sargent KA (1976) Volcanic suites and related cauldrons of Timber Mountain-Oasis Valley caldera complex, southern Nevada. (US Geological Survey Professional Paper 919) US Geological Survey, Washington, DC

    Google Scholar 

  10. Chen M, Alexander M (1973) Survival of soil bacteria during prolonged periods of extreme desiccation. Soil Biol Bichem 5:213–221

    Google Scholar 

  11. Colwell FS (1989) Microbiological comparison of surface soil and unsaturated subsurface soil from a semiarid high desert. Appl Environ Microbiol 55:2420–2423

    Google Scholar 

  12. Colwell FS, Stormberg GJ, Phelps TJ, Birnbaum SA, McKinley JP, Rawson SA, Veverka C, Goodwin S, Long PE, Russell BF, Garland T, Thompson D, Skinner P, Grover S (1992) Innovative techniques for collection of saturated and unsaturated subsurface basalts and sediments for microbiological characterization. J Microbiol Methods 15:279–292

    Google Scholar 

  13. Dawes EA (1985) Starvation, survival, and energy reserves. In: Fletcher, M, Floodgate G. (eds) Bacteria in their natural environments. Academic Press, Inc., New York, pp 43–79.

    Google Scholar 

  14. Fletcher M, Wobber FJ (1992) Subsurface microbial origins, Appendix A (summary of workshop proceedings). In: U. S. Department of Energy, Environmental Sciences Division, Office of Health and Environmental Research, Office of Energy Research, Subsurface Science Program, Origins of Microorganisms in Deep Subsurface Envionments, Deep Microbiology Subprogram, Phase II Preliminary Plan. (DOE/ER-0556T) US Department of Energy, Washington DC, pp 27–35

    Google Scholar 

  15. Fredrickson JK, Hicks RJ, Li SW, Brockman FJ (1988) Plasmid incidence in bacteria isolated from deep subsurface sediments. Appl Environ Microlbiol 54:2916–2923

    Google Scholar 

  16. Fredrickson JK, Garland TR, Hicks RJ, Thomas JM, Li SW, McFadden KM (1989) Lithotrophic and heterotrophic bacteria in deep subsurface sediments and their relation to sediment properties. Geomicrobiol J 7:53–66

    Google Scholar 

  17. Fredrickson JK, Balkwill DL, Zachara JM, Li SW, Brockman FJ, Simmons MA (1991) Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the Atlantic coastal plain. Appl Environ Microbiol 57:402–411

    Google Scholar 

  18. Ghiorse WC, Balkwill DL (1983) Enumeration and morphological characterization of bacteria indigenous to subsurface sediments. Develop Ind Microbiol 24:213–224

    Google Scholar 

  19. Griffin DM (1981) Water potential as a selective factor in the microbial ecology of soils. In: Parr JF, Gardner WR, Elliott LF (eds) Water potential relations in soil microbiology. Soil Science Society of America, Madison, Wisconsin, pp 141–151

    Google Scholar 

  20. Haldeman DL, Amy PS (1993) Bacterial heterogeneity in deep subsurface tunnels at Rainier Mesa, Nevada Test Site. Microb Ecol 25:183–194

    Google Scholar 

  21. Henis Y (1987) Survival and dormancy of bacteria. In: Hems Y (ed) Survival and dormancy of microorganisms. John Wiley & Sons, New York, pp 1–108

    Google Scholar 

  22. Hersman L, Purtymun W, Sinclair J (1988) Preliminary microbiological analysis of the vadose zone, Pajarito Plateau, New Mexico. (Abstr Ann Meet Am Soc Microbiol) American Society for Microbiology, Washington DC, pp 252

    Google Scholar 

  23. Hicks RJ, Fredrickson JK (1989) Aerobic metabolic potential of microbial populations indigenous to deep subsurface environments. Geomicrobiol J 7:67–77

    Google Scholar 

  24. Houser FN, Poole FG (1960) Structural features of pyroclastic rocks of the Oak Springs formation at the Nevada Test Site, Nye County, Nevada, as related to the topography of the underlying surface. US Geological Survey Professional Paper 400-B:266–268

  25. Jenkins D, Schultz J, Matin A (1988) Starvation-induced cross protection against heat or H2O2 challenge in Escherichia coli. J Bacteriol 170:3910–3914

    Google Scholar 

  26. Kieft TL (1991) Soil microbiology in reclamation of arid and semiarid lands. In: Skujins J. (ed) Semiarid lands and deserts: soil resource and reclamation. Marcel Dekker, New York, pp 209–256

    Google Scholar 

  27. Kieft TL, Rosacker LL (1991) Application of respiration- and adenylate-based soil microbiological assays to deep subsurface terrestrial sediments. Soil Biol Biochem 23:563–568

    Google Scholar 

  28. Kieft TL, Soroker E, Firestone MK (1987) Microbial biomass response to a rapid increase in water potential when dry soil in wetted. Soil Biol Biochem 19:119–126

    Google Scholar 

  29. Kieft TL, Rosacker LL, Willcox D, and Franklin AJ (1991) Water potential and starvation stress in deep subsurface organisms. In: Fliermans CB, Hazen TC (eds) Proceedings of the First International Symposium on Microbiology of the Deep Subsurface. WSRC Information Services, Aiken, South Carolina, pp 4–99 to 4–111

    Google Scholar 

  30. Konopka A, Turco R (1991) Biodegradation of organic compounds in vadose zone and aquifer sediments. Appl Environ Microbiol 57:2260–2268

    Google Scholar 

  31. Lind A-M, Eiland F (1989) Microbiological characterization and nitrate reduction in subsurface soils. Biol Fertil Soils 8:197–203

    Google Scholar 

  32. Long PE, Rawson SA (1991) Hydrologic and geochemical controls on microorganisms in subsurface formations. In: Pacific Northwest Laboratory Annual Report for 1990 to the DOE Office of Energy Research, Part 2, Environmental Sciences (PNL-7600 pt. 2) pp 22–30

  33. Long PE, Rawson SA, Murphy E, Bjomstad B (1992) Hydrologic and geochemical controls on microorganisms in subsurface formations. In: Pacific Northwest Laboratory Annual Report for 1991 to the DOE Office of Energy Research, Part 2, Environmental Sciences (PNL-8000 pt. 2) pp 49–71

  34. McElroy DL, Hubbell JM (1989) Vadose zone monitoring at the radioactive waste management complex, Idaho National Engineering Laboratory. In: Proceedings from nuclear waste isolation in the unsaturated zone, Focus '89. Witherspoon PA, Fiore JH, Slemmons DB (eds) American Nuclear Society, Inc., LaGrange Park, Ill., pp 359–364

    Google Scholar 

  35. McMahon PB, Chapelle FH (1991) Microbial production of organic acids in aquitard sediments and its role in aquifer geochemistry. Nature 349:233–235

    Google Scholar 

  36. Papendick RI, Campbell GS (1981) Theory and measurement of water potential. In: Parr JF, Gardner WR, and Elliott LF (eds) Water potential relations in soil microbiology. Soil Science Society of America, Madison, Wisconsin, pp 1–22

    Google Scholar 

  37. Phelps TJ, Fliermans CB, Garland TR, Pfiffner SM, White DC (1989) Methods for recovery of deep terrestrial subsurface sediments for microbiological studies. J Microbiol Methods 9:15–27

    Google Scholar 

  38. Rattray EAS, Prosser JI, Glover LA, Killham K (1992) Matric water potential in relation survival and activity of a genetically modified microbial inoculum in soil. Soil Biol Biochem 24:421–425

    Google Scholar 

  39. Robinson JB, Salonius PO, Chase FE (1965) A note on the differential response of Arthrobacter spp. and Pseudomonas spp. to drying in soil. Can J Microbiol 11:746–748

    Google Scholar 

  40. Rosacker LL, Kieft TL (1990) Biomass and adenylate energy charge of a grassland soil during drying. Soil Biol Biochem 22:1121–1127

    Google Scholar 

  41. Roszak DB, Colwell RR (1987) Survival strategies of bacteria in the natural environment. Microbiol Rev 51:365–379

    Google Scholar 

  42. Sinclair JL, Ghiorse WC (1989) Distribution of aerobic bacteria, protozoa, algae, and fungi in deep subsurface sediments. Geomicrobiol J 7:15–31

    Google Scholar 

  43. Sokal RR, Rolf FJ (1981) Biometry. Freeman, San Francisco

    Google Scholar 

  44. Weast RC (1983) Handbook of Chemistry and Physics, 64th Edition. Chemical Rubber Co., Boca Raton, Florida

    Google Scholar 

  45. Wollum AG (1982) Cultural methods for soil microorganisms. In: Page AL (ed) Methods of soil analysis, part 2: chemical and microbiological properties. American Society of Agronomy, Madison, Wisconsin, pp 781–802

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Offprint requests to: T.L. Kieft

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kieft, T.L., Amy, P.S., Brockman, F.J. et al. Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites. Microb Ecol 26, 59–78 (1993). https://doi.org/10.1007/BF00166030

Download citation

  • Received:

  • Revised:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00166030

Keywords

Navigation