Abstract
In this chapter we examine the properties of the Cellular Potts Model (CPM) formalism which make it preeminently suitable for modelling biological cells. The most outstanding feature in which CPM differs from other modelling formalisms, is that a cell is modelled as a deformable object, and takes its shape from a combination of internal and external forces which act upon it. The energy minimisation based CPM formalism enables us to integrate these forces acting at different scales. We map the parameters of the basic CPM formalism to physical and biological properties of cells. We show through those mappings that the modelling formalism is a powerful tool for investigating a large range of biological questions, from those concerning biophysical properties of single cells, cell motion, tissue level properties, all the way up to understanding the full morphogenesis and life-cycle of an organism.
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References
V. C. Abraham, V. Krishnamurthi, D. L. Taylor, and F. Lanni. The actin-based nanomachine at the leading edge of migrating cells. Biophys. J., 77(3):1721–1732, 1999.
P. B. Armstrong and R. Niederman. Reversal of tissue position after cell sorting. Dev. Biol., 28(3):518–527, 1972.
J. B. Beltman, A. F. M. Maréê, J. N. Lynch, M. J. Miller, and R. J. De Boer. Lymph node topology dictates T cell migration behavior. J. Exp. Biol., in press, 2007.
J. Carr and R. L. Pego. Metastable patterns in solutions of u t = ɛ 2 u xx − f ( u ). Comm. Pure Appl. Math., 42(5):523–576, 1989.
L. Carroll. Through the Looking Glass. Macmillan, London, 1872.
M. A. Castro, F. Klamt, V. A. Grieneisen, I. Grivicich, and J. C. Moreira. Gompertzian growth pattern correlated with phenotypic organization of colon carcinoma, malignant glioma and non-small cell lung carcinoma cell lines. Cell Prolif., 36(2):65–73, 2003.
C. S. Chen, M. Mrksich, S. Huang, G. M. Whitesides, and D. E. Ingber. Geometric control of cell life and death. Science, 276(5317):1425–1428, 1997.
L. P. Cramer, T. J. Mitchison, and J. A. Theriot. Actin-dependent motile forces and cell motility. Curr. Opin. Cell Biol., 6(1):82–86, 1994.
S. Etienne-Manneville. Cdc42-the centre of polarity. J. Cell Sci., 117(Pt 8):1291–1300, 2004.
E. Farge. Mechanical induction of Twist in the D rosophila foregut/stomodeal primordium. Curr. Biol., 13(16):1365–1377, 2003.
J. Folkman and A. Moscona. Role of cell shape in growth control. Nature, 273(5661):345–349, 1978.
J. A. Glazier and F. Graner. Simulation of the differential adhesion driven rearrangement of biological cells. Phys. Rev. E, 47(3):2128–2154, 1993.
F. Graner. Can surface adhesion drive cell-rearrangement? Part I: biological cellsorting. J. theor. Biol., 164:455–476, 1993.
V. A. Grieneisen. Estudo do estabelecimento de configurações em estruturas celulares. Master’s thesis, Universidade Federal do Rio Grande do Sul, Porto Alegre, 2004.
F. Guilak, G. R. Erickson, and H. P. Ting-Beall. The effects of osmotic stress on the viscoelastic and physical properties of articular chondrocytes. Biophys. J., 82(2):720–727, 2002.
C. Herring. Some theorems on the free energies of crystal surfaces. Phys. Rev., 82:87–93, 1951.
P. Hogeweg. Evolving mechanisms of morphogenesis: on the interplay between differential adhesion and cell differentiation. J. theor. Biol., 203(4):317–333, 2000.
P. Hogeweg. Shapes in the shadow: evolutionary dynamics of morphogenesis. Artif. Life, 6(1):85–101, 2000.
P. Hogeweg. Computing an organism: on the interface between informatic and dynamic processes. BioSystems, 64(1–3):97–109, 2002.
S. Huang and D. E. Ingber. The structural and mechanical complexity of cell-growth control. Nat. Cell Biol., 1(5):E131–E138, 1999.
M. Iwamoto, K. Sugino, R. D. Allen, and Y. Naitoh. Cell volume control in Paramecium: factors that activate the control mechanisms. J. Exp. Biol., 208(Pt 3):523–537, 2005.
Y. Jiang, H. Levine, and J. Glazier. Possible cooperation of differential adhesion and chemotaxis in mound formation of Dictyostelium. Biophys. J., 75(6):2615–2625, 1998.
A. Jilkine, A. F. M. Marée, and L. Edelstein-Keshet. Mathematical model for spatial segregation of the Rho-family GTPases based on inhibitory crosstalk. Bull. Math. Biol., in press, 2007.
J. Käfer, P. Hogeweg, and A. F. M. Marée. Moving forward moving backward: directional sorting of chemotactic cells due to size and adhesion differences. PLoS Comput. Biol., 2(6):e56, 2006.
V. M. Laurent, S. Kasas, A. Yersin, T. E. Schäffer, S. Catsicas, G. Dietler, A. B. Verkhovsky, and J.-J. Meister. Gradient of rigidity in the lamellipodia of migrating cells revealed by atomic force microscopy. Biophys. J., 89(1):667–675, 2005.
A. F. M. Marée. From Pattern Formation to Morphogenesis: Multicellular Coordination in Dictyostelium discoideum. PhD thesis, Utrecht University, 2000.
A. F. M. Marée and P. Hogeweg. How amoeboids self-organize into a fruiting body: multicellular coordination in Dictyostelium discoideum. Proc. Natl. Acad. Sci. U.S.A., 98(7):3879–3883, 2001.
A. F. M. Marée and P. Hogeweg. Modelling Dictyostelium discoideum morphogenesis: the culmination. Bull. Math. Biol., 64(2):327–353, 2002.
A. F. M. Marée, A. Jilkine, A. Dawes, V. A. Grieneisen, and L. Edelstein-Keshet. Polarization and movement of keratocytes: a multiscale modelling approach. Bull. Math. Biol., 68(5):1169–1211, 2006.
A. F. M. Marée, A. V. Panfilov, and P. Hogeweg. Migration and thermotaxis of Dictyostelium discoideum slugs, a model study. J. theor. Biol., 199:297–309, 1999.
A. F. M. Marée, A. V. Panfilov, and P. Hogeweg. Phototaxis during the slug stage of Dictyostelium discoideum: a model study. Proc. R. Soc. Lond. Ser. B, 266:1351–1360, 1999.
R. Meili and R. A. Firtel. Two poles and a compass. Cell, 114(2):153–156, 2003.
N. Metropolis, A. E. Rosenbluth, M. N. Rosenbluth, A. H. Teller, and E. Teller. Equation of state calculations by fast computing machines. J. Chem. Phys., 21:1087–1092, 1953.
A. Mogilner and L. Edelstein-Keshet. Regulation of actin dynamics in rapidly moving cells: a quantitative analysis. Biophys. J., 83(3):1237–1258, 2002.
A. Mogilner and G. Oster. Cell motility driven by actin polymerization. Biophys. J., 71(6):3030–3045, 1996.
J. C. M. Mombach, J. A. Glazier, R. C. Raphael, and M. Zajac. Quantitative comparison between differential adhesion models and cell sorting in the presence and absence of fluctuations. Phys. Rev. Lett., 75(11):2244–2247, 1995.
N. B. Ouchi, J. A. Glazier, J.-P. Rieu, A. Upadhyaya, and Y. Sawada. Improving the realism of the cellular Potts model in simulations of biological cells. Physica A, 329(3–4):451–458, 2003.
R. A. Ream, J. A. Theriot, and G. N. Somero. Influences of thermal acclimation and acute temperature change on the motility of epithelial wound-healing cells (keratocytes) of tropical, temperate and Antarctic fish. J. Exp. Biol., 206(Pt 24):4539–4551, 2003.
C. Rottman and M. Wortis. Exact equilibrium crystal shapes at nonzero temperature in two dimensions. Phys. Rev. B, 24:6274–6277, 1981.
B. Rubinstein, K. Jacobson, and A. Mogilner. Multiscale two-dimensional modeling of a motile simple-shaped cell. SIAM Multiscale Model. Simul., 3(2):413–439, 2005.
E. Ruoslahti. Stretching is good for a cell. Science, 276(5317):1345–1346, 1997.
N. J. Savill and P. Hogeweg. Modelling morphogenesis: From single cells to crawling slugs. J. theor. Biol., 184(3):229–235, 1997.
I. C. Scott and D. Y. R. Stainier. Developmental biology: twisting the body into shape. Nature, 425(6957):461–463, 2003.
L. A. Segel. Computing an organism. Proc. Natl. Acad. Sci. U.S.A., 98(7):3639–3640, 2001.
M. S. Steinberg. Reconstruction of tissues by dissociated cells: some morphogenetic tissue movements and the sorting out of embryonic cells may have a common explanation. Science, 141:401–408, 1963.
M. S. Steinberg. Adhesion-guided multicellular assembly: a commentary upon the postulates, real and imagined, of the differential adhesion hypothesis, with special attention to computer simulations of cell sorting. J. theor. Biol., 55(2):431–443, 1975.
T. M. Svitkina and G. G. Borisy. Arp2/3 complex and actin depolymerizing factor/ cofilin in dendritic organization and treadmilling of actin filament array in lamellipodia. J. Cell Biol., 145(5):1009–1026, 1999.
W. A. Thomas, J. Thomson, J. L. Magnani, and M. S. Steinberg. Two distinct adhesion mechanisms in embryonic neural retina cells. III. Functional specificity. Dev. Biol., 81(2):379–385, 1981.
W. R. Trickey, F. P. T. Baaijens, T. A. Laursen, L. G. Alexopoulos, and F. Guilak. Determination of the Poisson’s ratio of the cell: recovery properties of chondrocytes after release from complete micropipette aspiration. J. Biomech., 39(1):78–87, 2006.
A. B. Verkhovsky, T. M. Svitkina, and G. G. Borisy. Self-polarization and directional motility of cytoplasm. Curr. Biol., 9(1):11–20, 1999.
G. Wulff. Zur Frage des Geschwindigkeit des Wachstums und der Auflö sung der Krystallflächen. Z. Kristallogr. Mineral., 34:449–531, 1901.
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Marée, A.F.M., Grieneisen, V.A., Hogeweg, P. (2007). The Cellular Potts Model and Biophysical Properties of Cells, Tissues and Morphogenesis. In: Anderson, A.R.A., Chaplain, M.A.J., Rejniak, K.A. (eds) Single-Cell-Based Models in Biology and Medicine. Mathematics and Biosciences in Interaction. Birkhäuser Basel. https://doi.org/10.1007/978-3-7643-8123-3_5
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DOI: https://doi.org/10.1007/978-3-7643-8123-3_5
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