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Feature-Based Alignment of Volumetric Multi-modal Images

  • Conference paper

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 7917))

Abstract

This paper proposes a method for aligning image volumes acquired from different imaging modalities (e.g. MR, CT) based on 3D scale-invariant image features. A novel method for encoding invariant feature geometry and appearance is developed, based on the assumption of locally linear intensity relationships, providing a solution to poor repeatability of feature detection in different image modalities. The encoding method is incorporated into a probabilistic feature-based model for multi-modal image alignment. The model parameters are estimated via a group-wise alignment algorithm, that iteratively alternates between estimating a feature-based model from feature data, then realigning feature data to the model, converging to a stable alignment solution with few pre-processing or pre-alignment requirements. The resulting model can be used to align multi-modal image data with the benefits of invariant feature correspondence: globally optimal solutions, high efficiency and low memory usage. The method is tested on the difficult RIRE data set of CT, T1, T2, PD and MP-RAGE brain images of subjects exhibiting significant inter-subject variability due to pathology.

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References

  1. Joshi, S., David, B., Jomier, M., Gerig, G.: Unbiased diffeomorphic atlas construction for computational anatomy. NeuroImage LVI(23), 151–160 (2004)

    Article  Google Scholar 

  2. Twining, C.J., Cootes, T., Marsland, S., Petrovic, V., Schestowitz, R., Taylor, C.J.: A unified information-theoretic approach to groupwise non-rigid registration and model building. In: Christensen, G.E., Sonka, M. (eds.) IPMI 2005. LNCS, vol. 3565, pp. 1–14. Springer, Heidelberg (2005)

    Chapter  Google Scholar 

  3. Learned-Miller, E.: Data driven image models through continuous joint alignment. IEEE TPAMI 28(2), 236–250 (2005)

    Article  Google Scholar 

  4. Wu, G., Wang, Q., Jia, H., Shen, D.: Feature-based groupwise registration by hierarchical anatomical correspondence detection. Human Brain Mapping 33(2), 253–271 (2012)

    Article  Google Scholar 

  5. Zhang, P., Cootes, T.F.: Automatic construction of parts+geometry models for initializing groupwise registration. IEEE TMI 31(2), 341–358 (2012)

    Google Scholar 

  6. Lorenzen, P., Prastawa, M., Davis, B., Gerig, G., Bullitt, E., Joshi, S.: Multi-modal image set registration and atlas formation. MIA 10(3), 440 (2006)

    Google Scholar 

  7. Spiclin, Z., Likar, B., Pernus, F.: Groupwise registration of multimodal images by an efficient joint entropy minimization scheme. IEEE TIP 21(5), 2546–2558 (2012)

    MathSciNet  Google Scholar 

  8. Guld, M.O., Kohnen, M., Keysers, D., Schubert, H., Wein, B., Bredno, J., Lehmann, T.M.: Quality of dicom header information for image categorization. In: Int. Symposium on Medical Imaging, vol. 4685, pp. 280–287. SPIE (2002)

    Google Scholar 

  9. Lowe, D.G.: Distinctive image features from scale-invariant keypoints. IJCV 60(2), 91–110 (2004)

    Article  Google Scholar 

  10. Mikolajczyk, K., Schmid, C.: A performance evaluation of local descriptors. IEEE TPAMI 27(10), 1615–1630 (2005)

    Article  Google Scholar 

  11. Toews, M., Arbel, T.: A statistical parts-based appearance model of anatomical variability. IEEE TMI 26(4), 497–508 (2007)

    Google Scholar 

  12. Toews, M., Wells III, W.: Efficient and robust model-to-image alignment using 3d scale-invariant features. Medical Image Analysis 17(3), 271–282 (2013)

    Article  Google Scholar 

  13. Chen, J., Tian, J.: Real-time multi-modal rigid registration based on a novel symmetric-sift descriptor. Progress in Natural Science 19(5), 643–651 (2009)

    Article  Google Scholar 

  14. West, J., Fitzpatrick, J., Wang, M., Dawant, B., Maurer Jr., C., Kessler, R., Maciunas, R., Barillot, C., Lemoine, D., Collignon, A., et al.: Comparison and evaluation of retrospective intermodality brain image registration techniques. Journal of Computer Assisted Tomography 21(4), 554–568 (1997)

    Article  Google Scholar 

  15. Burt, P.J., Adelson, E.H.: The laplacian pyramid as a compact image code. IEEE Transactions on Communications 31(4) (1983)

    Google Scholar 

  16. Hubel, D.H., Wiesel, T.N.: Receptive fields, binocular interaction and functional architecture in the cat’s visual cortex. Journal of Physiology 160 (1962)

    Google Scholar 

  17. Roche, A., Malandain, G., Pennec, X., Ayache, N.: The correlation ratio as a new similarity measure for multimodal image registration. In: Wells, W.M., Colchester, A.C.F., Delp, S.L. (eds.) MICCAI 1998. LNCS, vol. 1496, pp. 1115–1124. Springer, Heidelberg (1998)

    Chapter  Google Scholar 

  18. Andronache, A., von Siebenthal, M., Szekely, G., Cattin, P.: Non-rigid registration of multi-modal images using both mutual information and cross-correlation. MIA 12, 3–15 (2008)

    Google Scholar 

  19. Evans, Hastings, Peacock: Statistical Distributions, 2nd edn. John Wiley and Sons (1993)

    Google Scholar 

  20. Ballard, D.: Generalizing the hough transform to detect arbitrary shapes. Pattern Recognition 13(2), 111–122 (1981)

    Article  MATH  Google Scholar 

  21. Duda, R.O., Hart, P.E., Stork, D.G.: Pattern classification, 2nd edn. Wiley (2001)

    Google Scholar 

  22. Rasmussen, C.E.: The infinite gaussian mixture model. In: Neural Information Processing Systems, pp. 554–560 (2001)

    Google Scholar 

  23. Comaniciu, D., Meer, P.: Mean shift: A robust approach toward feature space analysis. IEEE TPAMI 24(5), 603–619 (2002)

    Article  Google Scholar 

  24. Beis, J.S., Lowe, D.G.: Shape indexing using approximate nearest-neighbour search in high-dimensional spaces. In: CVPR, pp. 1000–1006 (1997)

    Google Scholar 

  25. Wachinger, C., Navab, N.: Structural image representation for image registration. In: MMBIA, pp. 23–30 (2010)

    Google Scholar 

  26. Rohr, K.: On 3D differential operators for detecting point landmarks. Image and Vision Computing 15(3), 219–233 (1997)

    Article  Google Scholar 

  27. Zöllei, L., Jenkinson, M., Timoner, S., Wells, W.M.: A marginalized MAP approach and EM optimization for pair-wise registration. In: Karssemeijer, N., Lelieveldt, B. (eds.) IPMI 2007. LNCS, vol. 4584, pp. 662–674. Springer, Heidelberg (2007)

    Chapter  Google Scholar 

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Toews, M., Zöllei, L., Wells, W.M. (2013). Feature-Based Alignment of Volumetric Multi-modal Images. In: Gee, J.C., Joshi, S., Pohl, K.M., Wells, W.M., Zöllei, L. (eds) Information Processing in Medical Imaging. IPMI 2013. Lecture Notes in Computer Science, vol 7917. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38868-2_3

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  • DOI: https://doi.org/10.1007/978-3-642-38868-2_3

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-38867-5

  • Online ISBN: 978-3-642-38868-2

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