Abstract
We review here the state of the art on the application of toxin–antitoxin pairs in biotechnology and medicine, touching on technologies that range from simple selection of recombinant DNA in the laboratory, to complex and ambitious therapeutic strategies that may become routine in the future.
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References
Agarwal, S., Mishra, N. K., Bhatnagar, S., & Bhatnagar, R. (2010). PemK toxin of Bacillus anthracis is a ribonuclease: An insight into its active site, structure, and function. Journal of Biological Chemistry, 285, 7254–7270.
Alekshun, M. N., & Levy, S. B. (2007). Molecular mechanisms of antibacterial multidrug resistance. Cell, 128, 1037–1050.
Amitai, S., Yassin, Y., & Engelberg-Kulka, H. (2004). MazF-mediated cell death in Escherichia coli: A point of no return. Journal of Bacteriology, 186, 8295–8300.
Arase, K., Saijo, K., Watanabe, H., Konno, A., Arase, H., & Saito, T. (1999). Ablation of a specific cell population by the replacement of a uniquely expressed gene with a toxin gene. Proceedings of the National Academy of Sciences of the United States of America, 96, 9264–9268.
Bai, H., Sang, G., You, Y., Xue, X., Zhou, Y., Hou, Z., et al. (2012). Targeting RNA polymerase primary sigma70 as a therapeutic strategy against methicillin-resistant Staphylococcus aureus by antisense peptide nucleic acid. PLoS ONE, 7, e29886.
Bernard, P. (1995). New ccdB positive-selection cloning vectors with kanamycin or chloramphenicol selectable markers. Gene, 162, 159–160.
Bernard, P. (1996). Positive selection of recombinant DNA by CcdB. BioTechniques, 21, 320–323.
Bernard, P., & Couturier, M. (1992). Cell killing by the F plasmid CcdB protein involves poisoning of DNA-topoisomerase II complexes. Journal of Molecular Biology, 226, 735–745.
Bernard, P., Gabant, P., Bahassi, E. M., & Couturier, M. (1994). Positive-selection vectors using the F plasmid ccdB killer gene. Gene, 148, 71–74.
Carattoli, A. (2009). Resistance plasmid families in Enterobacteriaceae. Antimicrobial Agents and Chemotherapy, 53, 2227–2238.
Chono, H., Matsumoto, K., Tsuda, H., Saito, N., Lee, K., Kim, S., et al. (2011a). Acquisition of HIV-1 resistance in T lymphocytes using an ACA-specific E. coli mRNA interferase. Human Gene Therapy, 22, 35–43.
Chono, H., Saito, N., Tsuda, H., Shibata, H., Ageyama, N., Terao, K., et al. (2011b). In vivo safety and persistence of endoribonuclease gene-transduced CD4+ T cells in cynomolgus macaques for HIV-1 gene therapy model. PLoS ONE, 6, e23585.
Chopra, N., Agarwal, S., Verma, S., Bhatnagar, S., & Bhatnagar, R. (2011). Modeling of the structure and interactions of the B. anthracis antitoxin, MoxX: Deletion mutant studies highlight its modular structure and repressor function. Journal of Computer-Aided Molecular Design, 25, 275–291.
Christensen, S. K., Maenhaut-Michel, G., Mine, N., Gottesman, S., Gerdes, K., & Van Melderen, L. (2004). Overproduction of the Lon protease triggers inhibition of translation in Escherichia coli: Involvement of the yefM-yoeB toxin–antitoxin system. Molecular Microbiology, 51, 1705–1717.
Davies, J. (2007). Microbes have the last word. A drastic re-evaluation of antimicrobial treatment is needed to overcome the threat of antibiotic-resistant bacteria. EMBO Reports, 8, 616–621.
de la Cueva-Mendez, G., Mills, A. D., Clay-Farrace, L., Diaz-Orejas, R., & Laskey, R. A. (2003). Regulatable killing of eukaryotic cells by the prokaryotic proteins Kid and Kis. EMBO Journal, 22, 246–251.
de la Cueva-Mendez, G., & Pimentel, B. (2007). Gene and cell survival: lessons from prokaryotic plasmid R1. EMBO Reports, 8, 458–464.
Faridani, O. R., Nikravesh, A., Pandey, D. P., Gerdes, K., & Good, L. (2006). Competitive inhibition of natural antisense Sok-RNA interactions activates Hok-mediated cell killing in Escherichia coli. Nucleic Acids Research, 34, 5915–5922.
Fiebig, A., Castro Rojas, C. M., Siegal-Gaskins, D., & Crosson, S. (2010). Interaction specificity, toxicity and regulation of a paralogous set of ParE/RelE-family toxin–antitoxin systems. Molecular Microbiology, 77, 236–251.
Gabant, P., Van Reeth, T., Dreze, P. L., Faelen, M., Szpirer, C., & Szpirer, J. (2000). New positive selection system based on the parD (kis/kid) system of the R1 plasmid. BioTechniques, 28, 784–788.
Gerdes, K., Christensen, S. K., & Lobner-Olesen, A. (2005). Prokaryotic toxin–antitoxin stress response loci. Nature Reviews Microbiology, 3, 371–382.
Gerdes, K., Rasmussen, P. B., & Molin, S. (1986). Unique type of plasmid maintenance function: Postsegregational killing of plasmid-free cells. Proceedings of the National Academy of Sciences of the United States of America, 83, 3116–3120.
Giuliodori, A. M., Di Pietro, F., Marzi, S., Masquida, B., Wagner, R., Romby, P., et al. (2010). The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA. Molecular Cell, 37, 21–33.
Goff, S. A., & Goldberg, A. L. (1987). An increased content of protease La, the lon gene product, increases protein degradation and blocks growth in Escherichia coli. Journal of Biological Chemistry, 262, 4508–4515.
Goldstein, J., Pollitt, N. S., & Inouye, M. (1990). Major cold shock protein of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America, 87, 283–287.
Guglielmini, J., & Van Melderen, L. (2011). Bacterial toxin–antitoxin systems: Translation inhibitors everywhere. Mobile Genetic Elements, 1, 283–290.
Heath, R. J., White, S. W., & Rock, C. O. (2001). Lipid biosynthesis as a target for antibacterial agents. Progress in Lipid Research, 40, 467–497.
Jaffe, A., Ogura, T., & Hiraga, S. (1985). Effects of the ccd function of the F plasmid on bacterial growth. Journal of Bacteriology, 163, 841–849.
Jensen, L. B., Garcia-Migura, L., Valenzuela, A. J., Lohr, M., Hasman, H., & Aarestrup, F. M. (2010). A classification system for plasmids from enterococci and other Gram-positive bacteria. Journal of Microbiol Methods, 80, 25–43.
Jones, P. G., VanBogelen, R. A., & Neidhardt, F. C. (1987). Induction of proteins in response to low temperature in Escherichia coli. Journal of Bacteriology, 169, 2092–2095.
Kamada, K., Hanaoka, F., & Burley, S. K. (2003). Crystal structure of the MazE/MazF complex: Molecular bases of antidote-toxin recognition. Molecular Cell, 11, 875–884.
Kim, H. G., Hwang, H. J., Kim, M. S., Lee, D. Y., Chung, S. K., Lee, J. M., et al. (2004). pTOC-KR: A positive selection cloning vector based on the ParE toxin. BioTechniques, 36(60–62), 64.
Koga, M., Otsuka, Y., Lemire, S., & Yonesaki, T. (2011). Escherichia coli rnlA and rnlB compose a novel toxin–antitoxin system. Genetics, 187, 123–130.
Koprunner, M., Thisse, C., Thisse, B., & Raz, E. (2001). A zebrafish nanos-related gene is essential for the development of primordial germ cells. Genes & Development, 15, 2877–2885.
Kristoffersen, P., Jensen, G. B., Gerdes, K., & Piskur, J. (2000). Bacterial toxin–antitoxin gene system as containment control in yeast cells. Applied and Environment Microbiology, 66, 5524–5526.
Leplae, R., Geeraerts, D., Hallez, R., Guglielmini, J., Dreze, P., & Van Melderen, L. (2011). Diversity of bacterial type II toxin–antitoxin systems: A comprehensive search and functional analysis of novel families. Nucleic Acids Research, 39, 5513–5525.
Leung, E., Datti, A., Cossette, M., Goodreid, J., McCaw, S. E., Mah, M., et al. (2011). Activators of cylindrical proteases as antimicrobials: Identification and development of small molecule activators of ClpP protease. Chemistry & Biology, 18, 1167–1178.
Levy, S. B., & Marshall, B. (2004). Antibacterial resistance worldwide: Causes, challenges and responses. Nature Medicine, 10, S122–S129.
Lioy, V. S., Machon, C., Tabone, M., Gonzalez-Pastor, J. E., Daugelavicius, R., Ayora, S., et al. (2012). The zeta toxin induces a set of protective responses and dormancy. PLoS ONE, 7, e30282.
Lioy, V. S., Martin, M. T., Camacho, A. G., Lurz, R., Antelmann, H., Hecker, M., et al. (2006). pSM19035-encoded zeta toxin induces stasis followed by death in a subpopulation of cells. Microbiology, 152, 2365–2379.
Lioy, V. S., Rey, O., Balsa, D., Pellicer, T., & Alonso, J. C. (2010). A toxin–antitoxin module as a target for antimicrobial development. Plasmid, 63, 31–39.
Maisonneuve, E., Shakespeare, L. J., Jorgensen, M. G., & Gerdes, K. (2011). Bacterial persistence by RNA endonucleases. Proceedings of the National Academy of Sciences of the United States of America, 108, 13206–13211.
Mao, L., Inoue, K., Tao, Y., Montelione, G. T., McDermott, A. E., & Inouye, M. (2011). Suppression of phospholipid biosynthesis by cerulenin in the condensed single-protein-production (cSPP) system. Journal of Biomolecular NMR, 49, 131–137.
Mao, L., Tang, Y., Vaiphei, S. T., Shimazu, T., Kim, S. G., Mani, R., et al. (2009). Production of membrane proteins for NMR studies using the condensed single protein (cSPP) production system. Journal of Structural and Functional Genomics, 10, 281–289.
Mao, L., Vaiphei, S. T., Shimazu, T., Schneider, W. M., Tang, Y., Mani, R., et al. (2010). The E. coli single protein production system for production and structural analysis of membrane proteins. Journal of Structural and Functional Genomics, 11, 81–84.
Martinez, J. L., & Baquero, F. (2002). Interactions among strategies associated with bacterial infection: Pathogenicity, epidemicity, and antibiotic resistance. Clinical Microbiology Reviews, 15, 647–679.
Meng, J., Kanzaki, G., Meas, D., Lam, C. K., Crummer, H., Tain, J., et al. (2012). A genome-wide inducible phenotypic screen identifies antisense RNA constructs silencing Escherichia coli essential genes. FEMS Microbiology Letters, 329, 45–53.
Miki, T., Yoshioka, K., & Horiuchi, T. (1984). Control of cell division by sex factor F in Escherichia coli. I. The 42.84-43.6 F segment couples cell division of the host bacteria with replication of plasmid DNA. Journal of Molecular Biology, 174, 605–625.
Moritz, E. M., & Hergenrother, P. J. (2007). Toxin–antitoxin systems are ubiquitous and plasmid-encoded in vancomycin-resistant enterococci. Proceedings of the National Academy of Sciences of the United States of America, 104, 311–316.
Nehlsen, K., Herrmann, S., Zauers, J., Hauser, H., & Wirth, D. (2010). Toxin–antitoxin based transgene expression in mammalian cells. Nucleic Acids Research, 38, e32.
Nikaido, H. (2009). Multidrug resistance in bacteria. Annual Review of Biochemistry, 78, 119–146.
Norman, A., Hansen, L. H., & Sorensen, S. J. (2009). Conjugative plasmids: Vessels of the communal gene pool. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 364, 2275–2289.
Ogura, T., & Hiraga, S. (1983). Mini-F plasmid genes that couple host cell division to plasmid proliferation. Proceedings of the National Academy of Sciences of the United States of America, 80, 4784–4788.
Okeke, I. N., Laxminarayan, R., Bhutta, Z. A., Duse, A. G., Jenkins, P., O’Brien, T. F., et al. (2005). Antimicrobial resistance in developing countries. Part I: Recent trends and current status. The Lancet Infectious Diseases, 5, 481–493.
Overgaard, M., Borch, J., & Gerdes, K. (2009). RelB and RelE of Escherichia coli form a tight complex that represses transcription via the ribbon-helix-helix motif in RelB. Journal of Molecular Biology, 394, 183–196.
Pandey, D. P., & Gerdes, K. (2005). Toxin–antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Research, 33, 966–976.
Park, J. H., Yamaguchi, Y., & Inouye, M. (2012). Intramolecular regulation of the sequence-specific mRNA interferase activity of MazF fused to a MazE fragment with a linker cleavable by specific proteases. Applied and Environment Microbiology, 78, 3794–3799.
Peleg, A. Y., & Hooper, D. C. (2010). Hospital-acquired infections due to Gram-negative bacteria. New England Journal of Medicine, 362, 1804–1813.
Peubez, I., Chaudet, N., Mignon, C., Hild, G., Husson, S., Courtois, V., et al. (2010). Antibiotic-free selection in E. coli: New considerations for optimal design and improved production. Microbial Cell Factories, 9, 65.
Pimentel, B., Madine, M. A., & de la Cueva-Mendez, G. (2005). Kid cleaves specific mRNAs at UUACU sites to rescue the copy number of plasmid R1. EMBO Journal, 24, 3459–3469.
Qing, G., Ma, L. C., Khorchid, A., Swapna, G. V., Mal, T. K., Takayama, M. M., et al. (2004). Cold-shock induced high-yield protein production in Escherichia coli. Nature Biotechnology, 22, 877–882.
Raskatov, J. A., Meier, J. L., Puckett, J. W., Yang, F., Ramakrishnan, P., & Dervan, P. B. (2012). Modulation of NF-kappaB-dependent gene transcription using programmable DNA minor groove binders. Proceedings of the National Academy of Sciences of the United States of America, 109, 1023–1028.
Reckel, S., Lohr, F., & Dotsch, V. (2005). In-cell NMR spectroscopy. ChemBioChem, 6, 1601–1606.
Roberts, R. C., Spangler, C., & Helinski, D. R. (1993). Characteristics and significance of DNA binding activity of plasmid stabilization protein ParD from the broad host-range plasmid RK2. Journal of Biological Chemistry, 268, 27109–27117.
Roman, G., Endo, K., Zong, L., & Davis, R. L. (2001). P[Switch], a system for spatial and temporal control of gene expression in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America, 98, 12602–12607.
Sass, P., Josten, M., Famulla, K., Schiffer, G., Sahl, H. G., Hamoen, L., et al. (2011). Antibiotic acyldepsipeptides activate ClpP peptidase to degrade the cell division protein FtsZ. Proceedings of the National Academy of Sciences of the United States of America, 108, 17474–17479.
Schneider, W. M., Inouye, M., Montelione, G. T., & Roth, M. J. (2009). Independently inducible system of gene expression for condensed single protein production (cSPP) suitable for high efficiency isotope enrichment. Journal of Structural and Functional Genomics, 10, 219–225.
Shao, Y., Harrison, E. M., Bi, D., Tai, C., He, X., Ou, H. Y., et al. (2011). TADB: A web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea. Nucleic Acids Research, 39, D606–D611.
Shapira, A., Shapira, S., Gal-Tanamy, M., Zemel, R., Tur-Kaspa, R., & Benhar, I. (2012). Removal of hepatitis C virus-infected cells by a zymogenized bacterial toxin. PLoS ONE, 7, e32320.
Shimazu, T., Degenhardt, K., Nur, E. K. A., Zhang, J., Yoshida, T., Zhang, Y., et al. (2007). NBK/BIK antagonizes MCL-1 and BCL-XL and activates BAK-mediated apoptosis in response to protein synthesis inhibition. Genes & Development, 21, 929–941.
Slanchev, K., Stebler, J., de la Cueva-Mendez, G., & Raz, E. (2005). Development without germ cells: The role of the germ line in zebrafish sex differentiation. Proceedings of the National Academy of Sciences of the United States of America, 102, 4074–4079.
Summers, D. K., & Sherratt, D. J. (1984). Multimerization of high copy number plasmids causes instability: CoIE1 encodes a determinant essential for plasmid monomerization and stability. Cell, 36, 1097–1103.
Suzuki, M., Zhang, J., Liu, M., Woychik, N. A., & Inouye, M. (2005). Single protein production in living cells facilitated by an mRNA interferase. Molecular Cell, 18, 253–261.
Szpirer, C. Y., & Milinkovitch, M. C. (2005). Separate-component-stabilization system for protein and DNA production without the use of antibiotics. BioTechniques, 38, 775–781.
Terwilliger, T. C., Stuart, D., & Yokoyama, S. (2009). Lessons from structural genomics. Annual Review of Biophysics, 38, 371–383.
Tzika, A. C., Rosa, S. F., Fabiani, A., Snell, H. L., Snell, H. M., Marquez, C., et al. (2008). Population genetics of Galapagos land iguana (genus Conolophus) remnant populations. Molecular Ecology, 17, 4943–4952.
Vaiphei, S. T., Tang, Y., Montelione, G. T., & Inouye, M. (2011). The use of the condensed single protein production system for isotope-labeled outer membrane proteins, OmpA and OmpX in E. coli. Molecular Biotechnology, 47, 205–210.
Van Melderen, L., & Saavedra De Bast, M. (2009). Bacterial toxin–antitoxin systems: More than selfish entities? PLoS Genetics, 5(3), .
Vandermeulen, G., Marie, C., Scherman, D., & Preat, V. (2011). New generation of plasmid backbones devoid of antibiotic resistance marker for gene therapy trials. Molecular Therapy, 19, 1942–1949.
Vieira, J., & Messing, J. (1982). The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene, 19, 259–268.
Walhout, A. J., Temple, G. F., Brasch, M. A., Hartley, J. L., Lorson, M. A., van den Heuvel, S., et al. (2000). GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes. Methods in Enzymology, 328, 575–592.
Wang, X., & Wood, T. K. (2011). Toxin–antitoxin systems influence biofilm and persister cell formation and the general stress response. Applied and Environment Microbiology, 77, 5577–5583.
Watts, A. (2005). Solid-state NMR in drug design and discovery for membrane-embedded targets. Nature Reviews Drug Discovery, 4, 555–568.
Williams, J. J., Halvorsen, E. M., Dwyer, E. M., DiFazio, R. M., & Hergenrother, P. J. (2011). Toxin–antitoxin (TA) systems are prevalent and transcribed in clinical isolates of Pseudomonas aeruginosa and methicillin-resistant Staphylococcus aureus. FEMS Microbiology Letters, 322, 41–50.
Williams, J. J., & Hergenrother, P. J. (2012). Artificial activation of toxin–antitoxin systems as an antibacterial strategy. Trends in Microbiology, 20, 291–298.
Xia, B., Ke, H., Jiang, W., & Inouye, M. (2002). The Cold Box stem-loop proximal to the 5’-end of the Escherichia coli cspA gene stabilizes its mRNA at low temperature. Journal of Biological Chemistry, 277, 6005–6011.
Yamaguchi, Y., & Inouye, M. (2011). Regulation of growth and death in Escherichia coli by toxin–antitoxin systems. Nature Reviews Microbiology, 9, 779–790.
Yamamoto, T. A., Gerdes, K., & Tunnacliffe, A. (2002). Bacterial toxin RelE induces apoptosis in human cells. FEBS Letters, 519, 191–194.
Yang, M., Gao, C., Wang, Y., Zhang, H., & He, Z. G. (2010). Characterization of the interaction and cross-regulation of three Mycobacterium tuberculosis RelBE modules. PLoS ONE, 5, e10672.
Zhang, Y., Zhang, J., Hoeflich, K. P., Ikura, M., Qing, G., & Inouye, M. (2003). MazF cleaves cellular mRNAs specifically at ACA to block protein synthesis in Escherichia coli. Molecular Cell, 12, 913–923.
Zhu, L., Sharp, J. D., Kobayashi, H., Woychik, N. A., & Inouye, M. (2010). Noncognate Mycobacterium tuberculosis toxin–antitoxins can physically and functionally interact. Journal of Biological Chemistry, 285, 39732–39738.
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Work in Dr. de la Cueva-Méndez’s laboratory is supported by Fundación Pública Andaluza Progreso y Salud, which depends on the Consejeria de Salud y Bienestar Social of the Junta de Andalucia.
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de la Cueva-Méndez, G., Pimentel, B. (2013). Biotechnological and Medical Exploitations of Toxin-Antitoxin Genes and Their Components. In: Gerdes, K. (eds) Prokaryotic Toxin-Antitoxins. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-33253-1_19
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