Skip to main content

The Time Series Image Analysis of the HeLa Cell Using Viscous Fluid Registration

  • Conference paper
Computational Science and Its Applications – ICCSA 2010 (ICCSA 2010)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 6018))

Included in the following conference series:

Abstract

Optical microscopy image analysis is important in the life science research. To obtain the motion of the cell, we use the viscous fluid registration method based on fluid dynamics. Viscous fluid registration deforms an image at time t to the next image at time t+1. In this algorithm, there is a problem that an object cannot be divided into two. In other words, the divided objects from one are connected by thin line because the velocity field on the connected thin line is zero. To solve this problem, we suggest a new viscous fluid registration algorithm for the object division. This algorithm is only added similarity maximization step to correct the displacement in the near pixels in the original viscous fluid registration. Using this method, one object is divided into two, and divided objects are not connected. We experiment the anaphase detection based on a nucleus identification using laser scanning microscope HeLa cell images. Experimental result shows that 74 in 76 cells are tracking well and 6 cells in the anaphase are detected. In three scenes in the cell division which can not be divided into two using original viscous fluid registration, suggested algorithm can be divided into two cells completely.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Zhou, X., Li, F., Yan, J., Wong, S.T.: A novel cell segmentation method and cell phase identification using Markov model. IEEE transactions on information technology in biomedicine 13, 152–157 (2009)

    Article  Google Scholar 

  2. Chen, X., Zhou, X., Wong, S.T.: Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy. IEEE Transactions on Biomedical Engineering 53, 762–766 (2006)

    Article  Google Scholar 

  3. Dzyubachyk, O., Niessen, W., Meijering, E.: Advanced level-set based multiple-cell segmentation and tracking in time-lapse fluorescence microscopy images. Biomedical Imaging 21, 185–188 (2008)

    Google Scholar 

  4. Goldman, R.D., Spector, D.L.: Live Cell Imaging: A Laboratory Manual. Cold Spring Harbor Laboratory Press (2005)

    Google Scholar 

  5. Shu, X., Shaner, N.C., Tarbrough, C.A., Tsien, R.Y., Remington, S.J.: Novel Chromophores and Buried Charges Control Color in mFruits. Biochemistry 45, 9639–9647 (2006)

    Article  Google Scholar 

  6. Zitova, B., Flusser, J.: Image registration methods: a survey. Image and Vision Computing 21, 977–1000 (2003)

    Article  Google Scholar 

  7. D’Agostino, E., Maes, F., Vandermeulen, D., Suetens, P.: A Viscous Fluid Model for Multimodal Non-rigid Image Registration Using Mutual Information. In: Dohi, T., Kikinis, R. (eds.) MICCAI 2002. LNCS, vol. 2489, pp. 541–548. Springer, Heidelberg (2002)

    Chapter  Google Scholar 

  8. Bro-Nielsen, M., Gramkow, C.: Fast fluid registration of medical images. Visualization in Biomedical Computing, 267–276 (1996)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Tokuhisa, S., Kaneko, K. (2010). The Time Series Image Analysis of the HeLa Cell Using Viscous Fluid Registration. In: Taniar, D., Gervasi, O., Murgante, B., Pardede, E., Apduhan, B.O. (eds) Computational Science and Its Applications – ICCSA 2010. ICCSA 2010. Lecture Notes in Computer Science, vol 6018. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-12179-1_18

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-12179-1_18

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-12178-4

  • Online ISBN: 978-3-642-12179-1

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics