Abstract
The atomic force microscope (AFM) is a very versatile tool for studying biological samples at nanometre-scale resolution. The resolution one achieves depends on many factors, including the sample properties, the imaging environment, the AFM tip and cantilever probe characteristics, and the signal detection and feedback control mechanism, to name a few. This chapter describes how to routinely achieve the highest possible spatial resolution on isolated protein molecules on mica surfaces. This is illustrated with Immunoglobulin G antibodies but the methods apply equally well to any other globular multi-subunit protein, as well as other biomolecules. Double-stranded DNA is used as a model sample to illustrate the effects of the force regime in amplitude modulation atomic force microscopy (AM AFM) on the image resolution and contrast. AM control is a widely used technique in biological AFM for reasons which are discussed.
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References
Binnig, G. et al. (1986) Atomic Force Microscope. Physical Review Letters 56, 930–933
Alessandrini, A. and Facci, P. (2005) AFM: a versatile tool in biophysics. Measurement Science and Technology 16, 65–92
Tamayo, J. and Garcia, R. (1996) Deformation, Contact Time, and Phase Contrast in Tapping Mode Scanning Force Microscopy. Langmuir 12 (18), 4430–4435
Hansma, H.G. and Hoh, J.H. (1994) Biomolecular Imaging with the Atomic Force Microscope. Annual Review of Biophysics and Biomolecular Structure 23, 115–140
Thomson, N.H. et al. (1996) Protein tracking and detection of protein motion using atomic force microscopy. Biophysical Journal 70 (5), 2421–2431
Ostendorf, F. et al. (2008) How flat is an air-cleaved mica surface? Nanotechnology 19, 305705–305710
Moreno-Herrero, F. et al. (2003) DNA height in atomic force microscopy. Ultramicroscopy 96, 167–174
Thomson, N.H. (2005) Imaging the substructure of antibodies with tapping-mode AFM in air: the importance of a water layer on mica. Journal of Microscopy 217, 193–199
Garcia, R. and Perez, R. (2002) Dynamic Atomic Force Microscopy Methods. Surface Science Reports 47, 197–301
Hansma, P.K. et al. (1994) Tapping mode atomic force microscopy in liquids. Applied Physics Letters 64, 1738–1740
Garcia, R. and San Paulo, A. (2000) Dynamics of a vibrating tip near or in intermittent contact with a surface. Physical Review B 61, 13381–13384
San Paulo, A. and Garcia, R. (2000) High-Resolution Imaging of Antibodies by Tapping-Mode Atomic Force Microscopy: Attractive and Repulsive Tip-Sample Interaction Regimes. Biophysical Journal 78, 1599–1605
Thomson, N.H. (2005) The substructure of immunoglobulin G resolved to 25 kDA using amplitude modulation in air. Ultramicroscopy 105, 1003–1110
Abou-Saleh, R.H. et al. (2009) Nanoscale Probing Reveals that Reduced Stiffness of Clots from Fibrinogen Lacking 42 N-Terminal Bβ-Chain Residues Is Due to the Formation of Abnormal Oligomers. Biophysical Journal 96 (6), 2415–2427
Quate, C.F. (1994) The AFM as a tool for surface imaging. Surface Science 299/300, 980–995
Urry, D.W. (1988) Entropic elastic processes in protein mechanisms. I. Elastic structure due to an inverse temperature transition and elasticity due to internal chain dynamics Journal of Protein Chemistry 7 (1), 1–34
Fukuma, T. et al. (2005) True molecular resolution in liquid by frequency modulation atomic force microscopy. Applied Physics Letters 86, 193108–193110
Y. Maeda et al. (1999) Observation of single- and double-stranded DNA using non-contact atomic force microscopy. Applied Surface Science 140, 400–405
J. Martinez et al. (2005) Length control and sharpening of atomic force microscope carbon nanotube tips assisted by an electron beam. Nanotechnology 16, 2493–2496
Patil, S. et al. (2007) Force microscopy imaging of individual protein molecules with sub-pico Newton force sensitivity. Journal of Molecular Recognition 20, 516–523
Zhang, Y. et al. (1996) Imaging Biological Structures with the Cryo Atomic Force Microscope. Biophysical Journal 71, 2168–2176
Sitong Sheng et al. (2006) Localization of Linker Histone in Chromatosomes by Cryo-Atomic Force Microscopy. Biophysical Journal 91 (4), L35–L37
Gross, L. et al. (2009) The Chemical Structure of a Molecule Resolved by Atomic Force Microscopy. Science 325, 1110–1114
Ostendorf, F. et al. (2009) Evidence for Potassium Carbonate Crystallites on Air-Cleaved Mica Surfaces. Langmuir 25 (18), 10764–10767
Christenson, H.K. and Israelachvili, J.N. (1987) Growth of Ionic Crystallites on Exposed Surfaces. Journal of colloid and interface science 17, 576–577
Christenson, H.K. (1993) Adhesion and surface energy of mica in air and water. Journal of Physical Chemistry 97, 12034–12041
Zitzler, L. et al. (2002) Capillary forces in tapping mode atomic force microscopy. Physical Review B 66, 155436–155443
Martinez, N. and Garcia, R. (2006) Measuring phase shifts and energy dissipation with amplitude modulation atomic force microscopy. Nanotechnology 17, 167–172
Cleveland, J.P. et al. (1998) Energy dissipation in tapping-mode atomic force microscopy. Applied Physics Letters 72 (20), 2613–2615
Acknowledgements
We thank Anthony Maxwell for kindly providing us with monoclonal IgG antibodies against the A-subunit of DNA gyrase. SS is funded through a Doctoral Training Grant of the BBSRC. We acknowledge the University of Leeds for strategic investment in AFM infrastructure.
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Santos, S., Thomson, N.H. (2011). High Resolution Imaging of Immunoglobulin G Antibodies and Other Biomolecules Using Amplitude Modulation Atomic Force Microscopy in Air. In: Braga, P., Ricci, D. (eds) Atomic Force Microscopy in Biomedical Research. Methods in Molecular Biology, vol 736. Humana Press. https://doi.org/10.1007/978-1-61779-105-5_5
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DOI: https://doi.org/10.1007/978-1-61779-105-5_5
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