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  • © 2011

Formalin-Fixed Paraffin-Embedded Tissues

Methods and Protocols

Editors:

  • Includes well-established and tested methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains well-organized themes and key implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 724)

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Table of contents (19 protocols)

  1. Front Matter

    Pages i-xii
  2. Regulatory and Ethical Issues on the Utilization of FFPE Tissues in Research

    • Catherine M. With, David L. Evers, Jeffrey T. Mason
    Pages 1-21
  3. Tissue Microarrays: Construction and Uses

    • Carol B. Fowler, Yan-Gao Man, Shimin Zhang, Timothy J. O’Leary, Jeffrey T. Mason, Robert E. Cunningham
    Pages 23-35
  4. Standardization in Immunohistology

    • Anthony S.-Y. Leong, Trishe Y.-M. Leong
    Pages 37-68
  5. Microwaves for Chromogenic In Situ Hybridization

    • Anthony S.-Y. Leong, Zenobia Haffajee
    Pages 79-89
  6. Automated Analysis of FISH-Stained HER2/neu Samples with Metafer

    • Christian Schunck, Eiman Mohammad
    Pages 91-103
  7. Microarray Profiling of DNA Extracted from FFPE Tissues Using SNP 6.0 Affymetrix Platform

    • Marianne Tuefferd, An de Bondt, Ilse Van den Wyngaert, Willem Talloen, Hinrich Göhlmann
    Pages 147-160
  8. Whole Genome Amplification of DNA Extracted from FFPE Tissues

    • Mira Bosso, Fahd Al-Mulla
    Pages 161-180
  9. Pyrosequencing of DNA Extracted from Formalin-Fixed Paraffin-Embedded Tissue

    • Brendan Doyle, Ciarán O’Riain, Kim Appleton
    Pages 181-190
  10. Analysis of DNA Methylation in FFPE Tissues Using the MethyLight Technology

    • Ashraf Dallol, Waleed Al-Ali, Amina Al-Shaibani, Fahd Al-Mulla
    Pages 191-204
  11. RT-PCR Gene Expression Profiling of RNA from Paraffin-Embedded Tissues Prepared Using a Range of Different Fixatives and Conditions

    • Mei-Lan Liu, Jennie Jeong, Ranjana Ambannavar, Carl Millward, Frederick Baehner, Chithra Sangli et al.
    Pages 205-237
  12. RT-PCR-Based Gene Expression Profiling for Cancer Biomarker Discovery from Fixed, Paraffin-Embedded Tissues

    • Aaron Scott, Ranjana Ambannavar, Jennie Jeong, Mei-Lan Liu, Maureen T. Cronin
    Pages 239-257
  13. Protein Mass Spectrometry Applications on FFPE Tissue Sections

    • Carol B. Fowler, Timothy J. O’Leary, Jeffrey T. Mason
    Pages 281-295
  14. An Alternative Fixative to Formalin Fixation for Molecular Applications: The RCL2®-CS100 Approach

    • Amélie Denouël, Florence Boissière-Michot, Philippe Rochaix, Frédéric Bibeau, Nathalie Boulle
    Pages 297-307

About this book

Presenting an area of research that intersects with and integrates diverse disciplines, including genomics, epigenetics, proteomics, and cellular biology, among others, Formalin-Fixed Paraffin-Embedded Tissues: Methods and Protocols collects contributions from expert researchers in order to provide practical guidelines to this complex study. Compiled in order to provide researchers with up-to-date methodological information pertaining to the utilization of genomic, transcriptomic, and proteomic data in diagnosis, prognosis, and tailored therapy, the ultimate aim of this volume is to decipher diseases at a molecular level. Divided into multiple convenient chapters, this detailed book covers various techniques to construct and utilize tissue arrays, it also provides detailed protocols in immunohistochemistry, immunofluorescence, fluorescent and chromogenic in situ hybridization, and ultimately introduces protocols for FFPET microdissection and nucleic acids extraction for their utilization in advanced techniques such as microarray CGH, DNA methylation and pyrosequencing. The volume also discusses FFPET research from an ethical standpoint and concludes with a chapter on novel tissue fixative. Written in the highly successful Methods in Molecular Biology™ series format, chapters contain introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and notes on troubleshooting and avoiding known pitfalls.

 

Authoritative and accessible, Formalin-Fixed Paraffin-Embedded Tissues: Methods and Protocols serves as a practical guide for scientists of all backgrounds and aims to convey the appropriate sense of fascination associated with this vital field of research.

Reviews

From the reviews:

“This text can be considered an introductory compendium of current methods and protocols in Molecular Biology for the use of Fixed Paraffin-Embedded Tissues that will be particularly suited to new researchers in the field who are eager to develop expertise. It is an easily readable and technically comprehensive book that would be ideal for initial experimental planning which can be complemented by other bibliographic sources and scientific journals for in-depth discussions of particular techniques and their potential applications.” (Flavia Troglio and Manuela Vecchi, Molecular Biotechnology, 2012)

Editors and Affiliations

  • Health Science Center, Dept. of Pathology, Kuwait University, Safat, Kuwait

    Fahd Al-Mulla

Bibliographic Information

  • Book Title: Formalin-Fixed Paraffin-Embedded Tissues

  • Book Subtitle: Methods and Protocols

  • Editors: Fahd Al-Mulla

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-61779-055-3

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2011

  • Hardcover ISBN: 978-1-61779-054-6Published: 16 February 2011

  • Softcover ISBN: 978-1-4939-6171-9Published: 23 August 2016

  • eBook ISBN: 978-1-61779-055-3Published: 03 March 2011

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XII, 312

  • Topics: Molecular Medicine, Pathology

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access