Abstract
In the field of intelligent digital healthcare, Continuous-flow microfluidic biochip (CFMB) has become a research direction of widespread concern. CFMB integrates a large number of microvalves and large-scale microchannel networks into a single chip, enabling efficient execution of various biochemical protocols. However, as the scale of the chip increases, the routing task for CFMB becomes increasingly complex, and traditional manual routing is no longer sufficient to meet the requirements. Therefore, this paper proposes an automatic routing framework for CFMB based on Genetic algorithm (GA) and A* algorithms. Specifically, we adopt a two-stage A* algorithm to design the routing between modules, using the routing results obtained from the A* algorithm as the basis for evaluating the quality of solutions in the GA algorithm. Then, the GA algorithm is used to search for the optimal approximate solution in the solution space. Experimental results show that this method can reduce routing length and minimize routing crossings, thereby improving the parallel transmission speed of reagents on CFMB. This approach provides a feasible solution for large-scale automated routing of CFMB in the field of intelligent digital healthcare.
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References
Araci, I.E., Quake, S.R.: Microfluidic very large scale integration (mVLSI) with integrated micromechanical valves. Lab Chip 12(16), 2803 (2012)
Duffy, D.C., et al.: Rapid prototyping of microfluidic systems in Poly (Dimethylsiloxane). Analy. Chem. 70(23), 4974–4984 (1998)
Unger, M.A., et al.: Monolithic microfabricated valves and pumps by multilayer soft lithography. Science 288(5463), 113–116 (2000)
Melin, J., Quake, S.R.: Microfluidic large-scale integration: the evolution of design rules for biological automation. Annu. Rev. Biophys. Biomol. Struct. 36, 213–231 (2007)
Thorsen, T., Maerkl, S.J., Quake, S.R.: Microfluidic large-scale integration. Science 298(5593), 580–584 (2002)
Becker, H.: Microfluidics: a technology coming of age. Med. Device Technol. 19(3), 21–24 (2008)
Levenspiel, O.: Chemical reaction engineering. John wiley & sons (1998)
Paegel, B.M., et al.: High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor. Proc. National Acad. Sci. 99(2), 574–579 (2002)
Lin, X., et al.: Effectively identifying compound-protein interaction using graph neural representation. IEEE/ACM Trans. Comput. Biol. Bioinform. 20(2), 932–943 (2023). https://doi.org/10.1109/TCBB.2022.3198003
Hu, K., et al.: Control-layer routing and control-pin minimization for flow-based microfluidic biochips. IEEE Trans. Comput. Aided Design Integrated Circ. Syst. (2017)
Chakraborty, S., Das, C., Chakraborty, S.: Securing module-less synthesis on cyberphysical digital microfluidic biochips from malicious intrusions’. In: 2018 31st International Conference on VLSI Design and 2018 17th International Conference on Embedded Systems (VLSID), pp. 467–468.IEEE (2018)
Yi-Siang, S., Ho, T.-Y., Lee, D.-T.: A routability-driven flow routing algorithm for programmable microfluidic devices. In: 2016 21st Asia and South Pacific Design Automation Conference (ASP-DAC), pp. 605–610. IEEE (2016)
Wang, Q.: Sequence-pair-based placement and routing for flowbased microfluidic biochips. In: 2016 21st Asia and South Pacific Design Automation Conference (ASP-DAC), pp. 587–592. IEEE (2016)
Grimmer, A.: Close-to-optimal placement and routing for continuous flow microfluidic biochips. In: 2017 22nd Asia and South Pacific Design Automation Conference (ASP-DAC), 530–535. IEEE (2017)
Huang, X., et al.: Timing-driven flow-channel network construction for continuous-flow microfluidic biochips. IEEE Trans. Comput.- Aided Design Integrated Circ. Syst. 39(6), 1314–1327 (2019)
Minhass, W.H., et al.: Control synthesis for the flow-based microfluidic large-scale integration biochips. In: Design Automation Conference (2013)
Yao, H., Ho, T.Y., Cai, Y.: PACOR: practical control-layer routing flow with length-matching constraint for flow-based microfluidic biochIPs. In: Design Automation Conference (2015)
Li, X., et al.: a potential information capacity index for link prediction of complex networks based on the cannikin law. Entropy 21(9), 863 (2019)
Wang, Q., et al.: Hamming-distance-based valve-switching optimization for control-layer multiplexing in flow-based microfluidic biochips. In: Design Automation Conference (2017)
Tseng, T.M., et al.: Columba: co-layout synthesis for continuous-flow microfluidic biochips. In: Proceedings of the 53rd Annual Design Automation Conference, pp. 1–6 (2016)
Tseng, T.M., et al.: Columba S: a scalable co-layout design automation tool for microfluidic large-scale integration. In: the 55th Annual Design Automation Conference (2018)
Tseng, T.M., et al.: Columba 2.0: a co-layout synthesis tool for continuous-flow microfluidic biochips. IEEE Trans. Comput.- Aided Design Integrated Circ. Syst. 37(8), 1588–1601 (2018)
Zheng, Q., et al.: An improved deep reinforcement learning for robot navigation. In: Third International Conference on Machine Learning and Computer Application (ICMLCA 2022), vol. 12636. SPIE, pp. 171–176 (2023)
Fan, X., et al.: Combine discussion mechanism and chaos strategy on particle swarm optimization algorithm. In: 2019 IEEE 10th International Conference on Software Engineering and Service Science (ICSESS). IEEE, pp. 642–645 (2019)
Dong, C., et al.: Dual-search artificial bee colony algorithm for engineering optimization. IEEE Access 7, 24571–24584 (2019)
Dong, C., et al.: A cost-driven method for deep-learning-based hardware trojan detection. Sensors 23(12), 5503 (2023)
Minhass, W.H., et al.: Architectural synthesis of flow-based microfluidic large-scale integration biochips. In: International Conference on Compilers, p. 181 (2012)
Acknowledgements
This work is supported by the fund of Fujian Province Digital Economy Alliance, the National Natural Science Foundation of China (No. U1905211), and the Natural Science Foundation of Fujian Province (No. 2020J01500).
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Huang, H., Yang, Z., Zhong, J., Xu, L., Dong, C., Bao, R. (2024). Genetic-A* Algorithm-Based Routing for Continuous-Flow Microfluidic Biochip in Intelligent Digital Healthcare. In: Jin, H., Yu, Z., Yu, C., Zhou, X., Lu, Z., Song, X. (eds) Green, Pervasive, and Cloud Computing. GPC 2023. Lecture Notes in Computer Science, vol 14504. Springer, Singapore. https://doi.org/10.1007/978-981-99-9896-8_14
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DOI: https://doi.org/10.1007/978-981-99-9896-8_14
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