Abstract
Agriculture is crucial to the economic growth of any nation. Modern agricultural practises and several types of fertilizers are used on a large scale to increase agricultural product production. Regular and routine use of chemical-based fertilizers causes ecological damage and disturbances, as well as numerous health risks for humans and domestic animals. Thus, there will be a significant transition from the use of chemical-based pesticides to the use of biofertilizers produced by the microbial community associated with plants in modern agricultural practises. These will play a vital role in conjunction with multiple cultivars by supplying a variety of nutrients, thereby boosting crop production. These biofertilizers not only possess the best possible plant growth-promoting traits but also have massive potential to enhance crop yield. Modern biofertilizers are designed to provide cultivars with a variety of beneficial traits, including increased nutrient availability, modulation of plant hormones, amelioration of stresses (both biotic and abiotic), and resistance to phytopathogens. To design the next generation of biofertilizers that can have broad-spectrum applications on diverse cultivar varieties, it is necessary to improve the microbial communities that can be classified as either plant growth-promoting rhizobacteria (PGPR) or plant growth-promoting fungi (PGPF). The utilization of microbial consortia and the use of outstanding organisms like extremophiles and microalgae will demand a better understanding of their genetic composition and metabolism in association with plants. Today, customized biofertilizers are in high demand because they are comprised of a novel microbial community designed to thrive in the diverse conditions of agricultural fields. This distinguishes them from traditional biofertilizers in terms of numerous advantageous characteristics such as bioremediation, superior plant interactions that contribute to stable physiology, and the degradation of numerous pesticides. On the other hand, the application of biofertilizers in different soils of diverse cultivars has had limited success and is yet to be explored more, as these PGPR and PGPF can be expelled by the additional flexible microbiome of the soil. Consequently, diverse strategies must be adopted to facilitate effective interactions of the novel microbiome with the soil, rhizospheric environment, phytomicrobiome association, and detoxification of pollutants that reduce crop yield. This chapter emphasizes the concepts of novel molecular biology techniques that can be used to understand the metagenomics, metaproteomics, and metabolomics of the wide variety of microbiomes. This chapter addresses the latest developments in phytomicrobiome engineering and synthetic biology for developing the next generation of biofertilizers.
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References
Afridi MS, Fakhar A, Kumar A, Ali S, Medeiros FHV, Muneer MA, Ali H, Saleem M (2022) Harnessing microbial multitrophic interactions for rhizosphere microbiome engineering. Microbiol Res 265:127199. https://doi.org/10.1016/j.micres.2022.127199
Alfiky A, Weisskopf L (2021) Deciphering trichoderma–plant–pathogen interactions for better development of biocontrol applications. J Fungi 7(1):1–18. https://doi.org/10.3390/jof7010061
Ali M, Javaid A, Naqvi SH, Batcho A, Kayani WK, Lal A, Sajid IA, Nwogwugwu JO (2020) Biotic stress triggered small RNA and RNAi defense response in plants. Mol Biol Rep 47(7):5511–5522
Article R (2022) Enhancing health benefits of tomato by increasing its antioxidant contents through different techniques: a review. Haraira 9(2):131–142
Ashour M, El-Shafei AA, Khairy HM, Abd-Elkader DY, Mattar MA, Alataway A, Hassan SM (2020) Effect of Pterocladia capillacea seaweed extracts on growth parameters and biochemical constituents of Jew’s Mallow. Agronomy 10(3):420
Ashour M, Hassan SM, Elshobary ME, Ammar GAG, Gaber A, Alsanie WF, Mansour AT, El-Shenody R (2021) Impact of commercial seaweed liquid extract (TAM®) biostimulant and its bioactive molecules on growth and antioxidant activities of hot pepper (Capsicum annuum). Plants 10(6):1045
Canellas LP, Olivares FL, Aguiar NO, Jones DL, Nebbioso A, Mazzei P, Piccolo A (2015) Humic and fulvic acids as biostimulants in horticulture. Sci Hortic 196:15–27
Chaudhary T, Shukla P (2019a) Bioinoculant capability enhancement through metabolomics and systems biology approaches. Brief Funct Genomics 18(3):159–168
Chaudhary T, Shukla P (2019b) Bioinoculants for bioremediation applications and disease resistance: innovative perspectives. Indian J Microbiol 59(2):129–136
Chiriboga X, Campos-Herrera R, Jaffuel G, Röder G, Turlings TCJ (2017) Diffusion of the maize root signal (E)-β-caryophyllene in soils of different textures and the effects on the migration of the entomopathogenic nematode Heterorhabditis megidis. Rhizosphere 3:53–59
Colla G, Hoagland L, Ruzzi M, Cardarelli M, Bonini P, Canaguier R, Rouphael Y (2017) Biostimulant action of protein hydrolysates: unraveling their effects on plant physiology and microbiome. Front Plant Sci 8:2202
Davies PJ (2004) Plant hormones: biosynthesis, signal transduction, action! Springer Science & Business Media, Berlin
Del Amor FM, Cuadra-Crespo P (2011) Plant growth-promoting bacteria as a tool to improve salinity tolerance in sweet pepper. Funct Plant Biol 39(1):82–90
Forman HJ, Davies KJA, Ursini F (2014) How do nutritional antioxidants really work: nucleophilic tone and para-hormesis versus free radical scavenging in vivo. Free Radic Biol Med 66:24–35. https://doi.org/10.1016/j.freeradbiomed.2013.05.045
GarcÃa CJ, Alacid V, Tomás-Barberán FA, GarcÃa C, Palazón P (2022) Untargeted metabolomics to explore the bacteria exo-metabolome related to plant biostimulants. Agronomy 12(8):1–13. https://doi.org/10.3390/agronomy12081926
Gürbüz Çolak N, Eken NT, Ülger M, Frary A, Doğanlar S (2020) Mapping of quantitative trait loci for antioxidant molecules in tomato fruit: carotenoids, vitamins C and E, glutathione and phenolic acids. Plant Sci 292:110393. https://doi.org/10.1016/j.plantsci.2019.110393
Imam J, Singh PK, Shukla P (2016) Plant microbe interactions in post genomic era: perspectives and applications. Front Microbiol 7:1488
Jaramillo-Botero A, Colorado J, Quimbaya M, Rebolledo MC, Lorieux M, Ghneim-Herrera T, Arango CA, Tobón LE, Finke J, Rocha C (2022) The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization. Front Plant Sci 13:992663
Jha P, Panwar J, Jha PN (2018) Mechanistic insights on plant root colonization by bacterial endophytes: a symbiotic relationship for sustainable agriculture. Environ Sustain 1(1):25–38
Kalia VC, Kumar P (2017) Microbial applications, vol 2. Springer, Berlin
Khan W, Rayirath UP, Subramanian S, Jithesh MN, Rayorath P, Hodges DM, Critchley AT, Craigie JS, Norrie J, Prithiviraj B (2009) Seaweed extracts as biostimulants of plant growth and development. J Plant Growth Regul 28(4):386–399
Krishna SBN, Dubey A, Malla MA, Kothari R, Upadhyay CP, Adam JK, Kumar A (2019) Integrating microbiome network: establishing linkages between plants, microbes and human health. Open Microbiol J 13(1):330
Kumar V, Baweja M, Singh PK, Shukla P (2016) Recent developments in systems biology and metabolic engineering of plant–microbe interactions. Front Plant Sci 7:1421
Meléndez-MartÃnez AJ, Fraser PD, Bramley PM (2010) Accumulation of health promoting phytochemicals in wild relatives of tomato and their contribution to in vitro antioxidant activity. Phytochemistry 71(10):1104–1114. https://doi.org/10.1016/j.phytochem.2010.03.021
Moura FA, de Andrade KQ, Dos Santos JCF, Araújo ORP, Goulart MOF (2015) Antioxidant therapy for treatment of inflammatory bowel disease: does it work? Redox Biol 6:617–639. https://doi.org/10.1016/j.redox.2015.10.006
Quiza L, St-Arnaud M, Yergeau E (2015) Harnessing phytomicrobiome signaling for rhizosphere microbiome engineering. Front Plant Sci 6:507
Rouphael Y, Colla G (2020) Biostimulants in agriculture. In: Frontiers in plant science, vol 11. Frontiers Media SA, Lausanne, p 40
Santos LF, Olivares FL (2021) Plant microbiome structure and benefits for sustainable agriculture. Curr Plant Biol 26:100198
Schmidt A, Siebert KG (2001) ALBERT—software for scientific computations and applications. Acta Math Univ Comenianae 70(1):105–122
Singh A, Kumari R, Yadav AN, Mishra S, Sachan A, Sachan SG (2020) Tiny microbes, big yields: microorganisms for enhancing food crop production for sustainable development. In: New and future developments in microbial biotechnology and bioengineering. Elsevier, Amsterdam, pp 1–15
Smith FA, Smith SE (2011) What is the significance of the arbuscular mycorrhizal colonisation of many economically important crop plants? Plant Soil 348(1):63–79
Trautman EP, Crawford JM (2016) Linking biosynthetic gene clusters to their metabolites via pathway-targeted molecular networking. Curr Top Med Chem 16(15):1705–1716
Tsotetsi T, Nephali L, Malebe M, Tugizimana F (2022) Bacillus for plant growth promotion and stress resilience: what have we learned? Plants 11(19):2482. https://doi.org/10.3390/plants11192482
Ullah Khan W (2015) Prevalence, causes, treatment and the role of antioxidants in ischemic brain stroke diseases: a review. Am J Biomed Life Sci 3(2):29. https://doi.org/10.11648/j.ajbls.s.2015030201.15
Üstündaş M, Yener HB, Helvaci ŞŞ (2018) Parameters affecting lycopene extraction from tomato powder and its antioxidant activity. Anadolu Univ J Sci Technol A Appl Sci Eng 19(2):454–467. https://doi.org/10.18038/aubtda.363140
Valdivia-Nájar CG, MartÃn-Belloso O, Soliva-Fortuny R (2018) Kinetics of the changes in the antioxidant potential of fresh-cut tomatoes as affected by pulsed light treatments and storage time. J Food Eng 237:146–153
Vallecilla-Yepez L, Ciftci ON (2018) Increasing cis-lycopene content of the oleoresin from tomato processing byproducts using supercritical carbon dioxide. Lwt 95:354–360
Van Oosten MJ, Pepe O, De Pascale S, Silletti S, Maggio A (2017) The role of biostimulants and bioeffectors as alleviators of abiotic stress in crop plants. Chem Biol Technol Agric 4(1):1–12
Vidal C, González F, Santander C, Pérez R, Gallardo V, Santos C, Aponte H, Ruiz A, Cornejo P (2022) Management of rhizosphere microbiota and plant production under drought stress: a comprehensive review. Plants 11(18). https://doi.org/10.3390/plants11182437
Viswanath G, Sekar J, Ramalingam PV (2020) Detection of diverse N-acyl homoserine lactone signalling molecules among bacteria associated with rice rhizosphere. Curr Microbiol 77(11):3480–3491
Wang S, Tan Y, Fan H, Ruan H, Zheng A (2015) Responses of soil microarthropods to inorganic and organic fertilizers in a poplar plantation in a coastal area of eastern China. Appl Soil Ecol 89:69–75
Yapa N, Lakmali D, De Zoysa KS, Silva S, Manawadu C, Herath BM, Madhushan A, Perera G, Ratnayakae O, Kapilan R, Rathnayake A, Sirisena AI, Asad S, Karunarathna SC, Bamunuarachchige C (2022) Biofertilizers: an emerging trend in agricultural sustainability. Chiang Mai J Sci 49(3 Special Issue II):608–640. https://doi.org/10.12982/CMJS.2022.050
Zlatko Stoyanov ZLATEV (2005) Effects of water stress on leaf water relations of young bean plants. J Cent Eur Agric 6(1):5–14
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Bose, J.C., Sarwan, J., Narang, J., Mittal, K., Sharma, H. (2023). Futuristic Approaches in Biofertilizer Industry Through Metabolomics, Proteomes, and Gene Editing. In: Kaur, S., Dwibedi, V., Sahu, P.K., Kocher, G.S. (eds) Metabolomics, Proteomes and Gene Editing Approaches in Biofertilizer Industry . Springer, Singapore. https://doi.org/10.1007/978-981-99-3561-1_15
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