Abstract
This chapter discusses two aspects of methodology, the theoretical and practical.
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References
Wang Z, Chen Y (2001) Detection of metal ions using wavelength interrogation surface plasmon resonance spectroscopy with calixarane derivatives as sensing films. Anal Lett 34:2609–2619
Wang Z, Chen Y (2001) Analysis of mono- and oligo-saccharides by multi-wavelength surface plasmon resonance (SPR) spectroscopy. Carbohydr Res 332:209–213
Han Z, Qi L, Shen G, Liu W, Chen Y (2007) Determination of chromium(VI) by surface Plasmon field-enhanced resonance light scattering. Anal Chem 79:5862–5866
Huang H, Huang S, Liu X, Zeng Y, Yu X, Liao B, Chen Y (2009) Label-free optical biosensors based on Au2S-coated gold nanorods. Biosens Bioelectron 24:3025–3029
Chen S, Zhao Q, Liu F, Huang H, Wang L, Yi S, Zeng Y, Chen Y (2013) Ultrasensitive determination of copper in complex biological media based on modulation of plasmonic properties of gold nanorods. Anal Chem 85:9142–9147
Zhao Q, Huang H, Zhang L, Wang L, Zeng Y, Xia X, Liu F, Chen Y (2016) Strategy to fabricate naked-eye readout ultrasensitive plasmonic nanosensor based on enzyme mimetic gold nanoclusters. Anal Chem 88:1412–1418
Wang X, Xu J, Wang Y, Wang F, Chen Y (2016) A universal strategy for direct immobilization of intact bioactivity-conserved carbohydrates on gold nanoparticles. RSC Adv 6:85333–85339
Yuan X, Chen Y (2012) Visual determination of Cu2+ through copper-catalysed in-situ formation of Ag nanoparticles. Analyst 137:4516–4523
Chen J, Xu J, Chen Y (2013) Interaction of straight chain alcohol vapors with self-assembled MOF film by surface plasmon resonance sensing and imaging. Chin Chem Lett 24:651–653
Shen G, Han Z, Liu W, Chen Y (2007) Color surface plasmon resonance imaging of protein microdots arrays. Chem Lett 36:926–927
Abelès F (1976) Surface electromagnetic waves ellipsometry. Surf Sci 56:237–251
Kabashin AV, Patskovsky S, Grigorenko AN (2009) Phase and amplitude sensitivities in surface plasmon resonance bio and chemical sensing. Opt Express 17:21191–21204
Kabashin AV, Nikitin PI (1997) Interferometer based on a surface-plasmon resonance for sensor applications. Quantum Electron 27:653–654
Kabashin AV, Nikitin PI (1998) Surface plasmon resonance interferometer for bio- and chemical-sensors. Opt Commun 150:5–8
Patskovsky S, Maisonneuve M, Meunier M, Kabashin AV (2008) Mechanical modulation method for ultra-sensitive phase measurements in photonics biosensing. Opt Express 16:21305–21314
Law W-C, Markowicz P, Yong K-T, Roy I, Baev A, Patskovsky S, Kabashin AV, Ho H-P, Prasad PN (2007) Wide dynamic range phase-sensitive surface plasmon resonance biosensor based on measuring the modulation harmonics. Biosens Bioelectron 23:627–632
Markowicz PP, Law WC, Baev A, Prasad PN, Patskovsky S, Kabashin AV (2007) Phase-sensitive time-modulated surface plasmon resonance polarimetry for wide dynamic range biosensing. Opt Express 15:1745–1754
Jung LS, Campbell CT, Chinowsky TM, Mar M, Yee SS (1998) Quantitative interpretation of the response of surface plasmon resonance sensors to adsorbed films. Langmuir 14:5636–5648
Armstrong Jr SH, Budka MJE, Morrison KC, Hasson M (1947) Preparation and properties of serum and plasma proteins. XII. The refractive properties of the proteins of human plasma and certain purified fractions. J Am Chem Soc 69:1747–1753
McMeekin TL, Groves ML, Hipp NJ (1964) Refractive indices of amino acids, proteins, and related substances. In: Stekol JA (ed) Amino acids and serum proteins. Adv Chem 44:54–56. https://doi.org/10.1021/ba-1964-0044.ch004
Darnell JE, Lodish H, Baltimore D (1990) Molecular cell biology. Scientific American Books, New York
Gölander C-G, Kiss E (1988) Protein adsorption on functionalized and ESCA-characterized polymer films studied by ellipsometry. J Colloid Interface Sci 121:240–253
Lide DR (ed) (1990) Handbook of chemistry physics, 71st edn. CRC Press, Boston
Chen J, Chen Y, Xu J, Zhang Y, Liao T (2012) Post-experimental denoising and background subtraction of surface plasmon resonance images for better quantification. Chemom Intell Lab Syst 114:56–63
Pitarke JM, Silkin VM, Chulkov EV, Echenique PM (2007) Theory of surface plasmons and surface-plasmon polaritons. Rep Prog Phys 70:1–87
Yu H, Shan X, Wang S, Chen H, Tao N (2014) Molecular scale origin of surface plasmon resonance biosensors. Anal Chem 86:8992–8997
Viitala L, Maley AM, Fung HWM, Corn RM, Viitala T, Murtomäki L (2016) Surface plasmon resonance imaging microscopy of liposomes and liposome-encapsulated gold nanoparticles. J Phys Chem C 120:25958–25966
Bozhevolnyi SI, Coello V (1998) Elastic scattering of surface plasmon polaritons: modeling and experiment. Phys Rev B: Condens Matter Mater Phys 58:10899–10910
Yu H, Shan X, Wang S, Wang S, Tao N (2017) Achieving high spatial resolution surface plasmon resonance microscopy with image reconstruction. Anal Chem 89:2704–2707
Aust EF, Sawodny M, Ito S, Knoll W (1994) Surface plasmon and guided optical wave microscopies. Scanning 16:353–361
Thiel AJ, Frutos AG, Jordan CE, Corn RM, Smith LM (1997) In situ surface plasmon resonance imaging detection of DNA hybridization to oligonucleotide arrays on gold surfaces. Anal Chem 69:4948–4956
Berger CEH, Beumer TAM, Kooyman RPH, Greve J (1998) Surface plasmon resonance multisensing. Anal Chem 70:703–706
Knoll W (1998) Interfaces and thin films as seen by bound electromagnetic waves. Annu Rev Phys Chem 49:569–638
Lyon LA, Holliway WD, Natan MJ (1999) An improved surface plasmon resonance imaging apparatus. Rev Sci Instrum 70:2076–2081
Rothenhäuslar B, Knoll W (1988) Surface plasmon microscopy. Nature 332:615–617
Zizlsperger M, Knoll W (1998) Multispot parallel on-line monitoring of interfacial binding reactions by surface plasmon microscopy. Prog Colloid Polym Sci 109:244–253
Huang H, Zhang S, Qi L, Yu X, Chen Y (2006) Microwave-assisted deposition of uniform thin gold film on glass surface. Surf Coat Technol 200:4389–4396
Brockman JM, Frutos AG, Corn RM (1999) A multistep chemical modification procedure to create DNA arrays on gold surfaces for the study of protein−DNA interactions with surface plasmon resonance imaging. J Am Chem Soc 121:8044–8051
Nelson BP, Grimsrud TE, Liles MR, Goodman RM, Corn RM (2001) Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal Chem 73:1–7
Camilone N, Chidsey CED, Liu G-Y, Scoles G (1993) Substrate dependence of the surface structure and chain packing of docosyl mercaptan self-assembled on the (111), (110) and (100) faces of single crystal gold. J Chem Phys 98:4234–4245
Jimenez A, Sarsa A, Blazquez M, Pineda T (2010) A molecular dynamics study of surfactant surface density of alkanethiol sefl-assembled monolayers on gold nanoparticles as a function of the radius. J Phys Chem C 114:21309–21314
Vericat C, Vela ME, Benitez G, Carro P, Salvarezza RC (2010) Sel-assembled monolayers of thiols and dithiols on gold: new challenges of a well known system. Chem Soc Rev 39:1805–1834
Ulman A (1999) Formation and structure of self-assembled monolayers. Chem Rev 96:1533–1554
Bryant MA, Pemberton JE (1991) Surface raman scattering of self-assembled monolayers form from 1-alkanethiols: behavior of films at gold and comparison to film at silver. J Am Chem Soc 113:8284–8293
Schoenfish MH, Pemberton JE (1998) Air stability of alkanethiol self-assmbled monolayers on silver and gold surfaces. J Am Chem Soc 120:4502–4513
Laibinis PE, Whitesides GM, Allara DL, Tao YT, Parikh AN, Nuzzo RG (1991) Comparison of the structures and wetting properties of self-assembled monolayes of n-alkanethiols on the coinage metal surfaces: copper, silver and gold. J Am Chem Soc 113:7152–7167
Campos MAC, Trilling AK, Yang M, Giesbers M, Beekwilder J, Paulusse JMJ, Zuihof H (2011) Self-assembled functional organic monolayers on oxide-free copper. Langmuir 27:8126–8133
Laibinis PE, Whitesides GM (1992) Self-assembled monolayers of n-alkanethiols on copper are barrier films that protect the metal against oxidation by air. J Am Chem Soc 114:9022–9028
Volmer M, Stralmann M, Viefhaus H (1990) Electrochemical and electron spectroscopic investigation of iron surface modified with thiols. Surf Interface Anal 16:278–282
Nozawa K, Nishihara H, Aramaki K (1997) Chemical modification of alkanethiol monolayers for protecting iron against corrosion. Corros Sci 39:1625–1639
Nozawa K, Aramaki K (1999) One- and two-dimensional polymer films of modified alkanethiol monolayers for preveting iron from corrosion. Corros Sci 41:57–73
Inkpen MS, Liu Z-F, Li H, Campos LM, Neaton JB, Venkataraman L (2019) Non-chemisorbed gold–sulfur binding prevails in self-assembled monolayers. Nat Chem 11:351–358. https://doi.org/10.1038/s41557-019-0216-y
Lee H, Dellatore SM, Miller WM, Messersmith PB (2007) Mussel-inspired surface chemistry for multifunctional coatings. Science 318:426–430
d’Ischia M, Napolitano A, Pezzella A, Meredith P, Sarna T (2009) Chemical and structural diversity in eumelanins: unexplored bio-optoelectronic materials. Angew Chem Int Ed 48:3914–3921
Della Vecchia NF, Avolio R, Alfè M, Errico ME, Napolitano A, d’Ischia M (2013) Building-block diversity in polydopamine underpins a multifunctional eumelanin-type platform tunable through a quinone control point. Adv Funct Mater 23:1331–1340
Yang W, Liu CJ, Chen Y (2018) Stability of polydopamine coatings on gold substrates inspected by surface plasmon resonance imaging. Langmuir 34:3565–3571
Hong S, Na YS, Choi S, Song IT, Kim WY, Lee H (2012) Non-covalent self-assembly and covalent polymerization co-contribute to polydopamine formation. Adv Funct Mater 22:4711–4717
Liebscher J, Mrówczyński R, Scheidt HA, Filip C, Hădade ND, Turcu R, Bende A, Beck S (2013) Structure of polydopamine: a never-ending story? Langmuir 29:10539–10548
Bernsmann F, Ball V, Addiego F, Ponche A, Michel M, Gracio JJ, Toniazzo V, Ruch D (2011) Dopamine-melanin film deposition depends on the used oxidant and buffer solution. Langmuir 27:2819–2825
d’Ischia M, Napolitano A, Ball V, Chen C-T, Buehler MJ (2014) Polydopamine and eumelanin: from structure-property relationships to a unified tailoring strategy. Acc Chem Res 47:3541–3550
Dreyer DR, Miller DJ, Freeman BD, Paul DR, Bielawski CW (2012) Elucidating the structure of poly(dopamine). Langmuir 28:6428–6435
Ball V (2010) Impedance spectroscopy and zeta potential titration of dopa-melanin films produced by oxidation of dopamine. Colloids Surf A 363:92–97
Kim BH, Lee DH, Kim JY, Shin DO, Jeong HY, Hong S, Yun JM, Koo CM, Lee H, Kim SO (2011) Mussel-inspired block copolymer lithography for low surface energy materials of teflon, graphene, and gold. Adv Mater 23:5618–5622
Smolin EM, Tapoport L (1959) The chemistry of heterocyclic compounds, s-triazine and derivatives. Itersciences, New York
Bruckner H, Strecker B (1992) Various concepts for toppingsteam plants with gas turbines. J Chromatogr 627:97–105
Thurstojanme JT, Dudleyd JR, Kaiser DW, Hechenbleikner I, Schaefer FC, Holm-Hansen D (1951) Cyanuric chloride derivatives. I. Aminochloro-s-triazines. J Am Chem Soc 73:2981–2983
Blotny G (2006) Recent applications of 2,4,6-trichloro-1,3,5-triazine and its derivatives in organic synthesis. Tetrahedron 62:9507–9522
Jan JZ, Huang BH, Lin JJ (2003) Facile preparation of amphiphilic oxyethylene–oxypropylene block copolymers by selective triazine coupling. Polymer 44:1003–1011
Steffensen MB, Simanek EE (2003) Chemoselective building blocks for dendrimers from relative reactivity data. Org Lett 5:2359–2361
Palazon F, Benavides CM, Leonard D, Souteyrand E, Chevolot Y, Cloarec JP (2014) Carbodiimide/NHS derivatization of COOH-terminated SAMs: activation or byproduct formation? Langmuir 30:4545–4550
Montalbetti CAGN, Falque V (2005) Amide bond formation and peptide coupling. Tetrahedron 61:10827–10852
Valeur E, Bradley M (2009) Amide bond formation: beyond the myth of coupling reagents. Chem Soc Rev 38:606–631
Li D, Guo Z, Liu C, Li J, Xu W, Chen Y (2017) Quantification of near-attomole gibberellins in floral organs dissected from a single Arabidopsis thaliana flower. Plant J 91:547–557
Nakajima N, Ikada Y (1995) Mechanism of amide formation by carbodiimide for bioconjugation in aquaus-media. Bioconjug Chem 6:123–130
Kuo JW, Swann DA, Prestwich GD (1991) Chemical modification of hyaluronic acid by carbodiimides. Bioconjug Chem 2:232–241
Pouyani T, Kuo JW, Harbison GS, Prestwich GD (1992) Solid-state NMR of N-acylureas derived from the reaction of hyaluronic acid with isotopically-labeled carbodiimides. J Am Chem Soc 114:5972–5976
Kurzer F, Douraghi K (1967) Advances in chemistry of carbodiimides. Chem Rev 67:107–152
Kishikawa K, Nakahara S, Nishikawa Y, Kohmoto S, Yamamoto M (2005) A ferroelectrically switchable columnar liquid crystal phase with achiral molecules: superstructures and properties of liquid crystalline ureas. J Am Chem Soc 127:2565–2571
Nyangulu JM, Galka MM, Jadhav A, Gai Y, Graham CM, Nelson KM, Cutler AJ, Taylor DC, Banowetz GM, Abrams SR (2005) An affinity probe for isolation of abscisic acid-binding proteins. J Am Chem Soc 127:1662–1664
Grant EB, Weiss JM, Branum S, Hayden S, Johnson S, Guiadeen D, Murray WV, Macielag MJ (2005) The synthesis of (9S)-9-alkyl-9-hydroxyerythromycin A derivatives and their ketolides. Tetrahedron Lett 46:2731–2735
Davis FA, Deng J (2004) Asymmetric synthesis of syn-(2R,3S)- and anti-(2S,3S)-ethyl diamino-3-phenylpropanoates from N-(benzylidene)-p-toluenesulfinamide and glycine enolates. Org Lett 6:2789–2792
White JD, Hansen JD (2005) Total synthesis of (-)-7-epicylindrospermopsin, a toxic metabolite of the freshwater cyanobacterium aphanizomenon ovalisporum, and assignment of its absolute configuration. J Org Chem 70:1963–1977
Iliev B, Linden A, Heimgartner H (2003) An unexpected formation of a 14-membered cyclodepsipeptide. Helv Chim Acta 86:3215–3234
Ella-Menye J-R, Sharma V, Wang G (2005) New synthesis of chiral 1,3-oxazinan-2-ones from carbohydrate derivatives. J Org Chem 70:463–469
Dandapani S, Curran DP (2004) Second generation fluorous DEAD reagents have expanded scope in the Mitsunobu reaction and retain convenient separation features. J Org Chem 69:8751–8757
Pedras MSC, Chumala PB, Quail JW (2004) Chemical mediators: the remarkable structure and host-selectivity of depsilairdin, a sesquiterpenic depsipeptide containing a new amino acid. Org Lett 6:4615–4617
Vaidyanathan R, Kalthod VG, Ngo DP, Manley JM, Lapekas SP (2004) Amidations using N, N′-carbonyldiimidazole: remarkable rate enhancement by carbon dioxide. J Org Chem 69:2565–2568
Li MH, Choi SK, Leroueil PR, Baker JR Jr (2014) Evaluating binding avidities of populations of heterogeneous multivalent ligand-functionalized nanoparticles. ACS Nano 8:5600–5609
Kolb HC, Finn MG, Sharpless KB (2001) Click chemistry: diverse chemical function from a few good reactions. Angew Chem Int Ed 40:2004–2021
Himo F, Lovell T, Hilgraf R, Rostovtsev VV, Noodleman L, Sharpless KB, Fokin VV (2005) Copper(I)-catalyzed synthesis of azoles. DFT study predicts unprecedented reactivity and intermediates. J Am Chem Soc 127:210–216
Boren BC, Narayan S, Rasmussen LK, Zhang L, Zhao H, Lin Z, Jia G, Fokin VV (2008) Ruthenium-catalyzed azide–alkyne cycloaddition: scope and mechanism. J Am Chem Soc 130:8923–8930
Hoyle CE, Lee TY, Roper T (2004) Thiol–enes: Chemistry of the past with promise for the future. J Polym Sci Part A: Polym Chem 42:5301–5338
Becer CR, Hoogenboom R, Schubert US (2009) Klick-Chemie jenseits von metallkatalysierten Cycloadditionen. Angew Chem 121:4998–5006
Kade MJ, Burke DJ, Hawker CJ (2010) The power of thiol-ene chemistry. J Polym Sci Part A: Polym Chem 48:743–750
Ke Z, Melisa AL, Ying W, Gregory NT (2011) Universal cyclic polymer templates. J Am Chem Soc 133:6906–6909
Hoyle CE, Browman CN (2010) Thiol–ene click chemistry. Angew Chem Int Ed 49:1540–1573
Hutchins RO, Hutchins MK (1991) Reduction of C=O to CHNH by metal hybrids. In: Trost BN, Fleming I (eds) Comprehensive organic synthesis, vol 8. Pergamon Press, New York
Albdel-Magid AF, Carson KG, Harris BD, Maryanoff CA, Shah RD (1996) Reductive amination of aldehydes and ketones with sodium triacetoxyborohydride. Studies on direct and indirect reductive amination procedures. J Org Chem 61:3849–3862
Borch RF, Bernstein MD, Durst HD (1971) Cyanohydridoborate anion as a selective reducing agent. J Am Chem Soc 93:2897–2904
Borch RF, Durst HD (1969) Lithium cyanohydridoborate, a versatile new reagent. J Am Chem Soc 91:3996–3997
Homola J, Yee SS, Gauglitz G (1999) Surface plasmon resonance sensors: reviews. Sens Actuators B Chem 54:3–15
Brockman JM, Nelson BP, Corn RM (2000) Surface plasmon resonance imaging measurements of ultrathin organic films. Annu Rev Phys Chem 51:41–63
Frey BL, Jordan CE, Kornguth S, Corn RM (1995) Control of the specific adsorption of proteins onto gold surfaces with poly(L-lysine) monolayers. Anal Chem 67:4452–4457
Jordan CE, Corn RM (1997) Surface plasmon resonance imaging measurements of electrostatic biopolymer adsorption onto chemically modified gold surfaces. Anal Chem 69:1449–1456
Nelson BP, Grimsrud TE, Liles MR, Goodman RM, Corn RM (2001) Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal Chem 73:1–7
Shumaker-Parry JS, Campbell CT (2004) Quantitative methods for spatially resolved adsorption/desorption measurements in real time by surface plasmon resonance microscopy. Anal Chem 76:907–917
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Chen, Y. (2023). Methodology. In: Surface Plasmon Resonance Imaging. Lecture Notes in Chemistry, vol 95. Springer, Singapore. https://doi.org/10.1007/978-981-99-3118-7_4
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