Abstract
MaxEnt is a widely used species distribution model (SDM) that works on the principle of maximizing entropy. Despite large body of species habitat research carried out using MaxEnt, till now there is no standardized accepted modeling procedure for obtaining reproducible research outcomes. There is a need to understand the nuances in the selection of model parameters and resulting uncertainties in the outcomes. We studied the global sensitivity and uncertainty in habitat projections of the species Quercus leucotrichophora (Banj oak) over Uttarakhand State of India in the Central Himalayas by varying the model parameters—regularization factor (RF), background points (BP), and k-fold cross-validations (CVs). The Sobol variance decomposition sensitivity analysis on the model outcomes indicates that high probable habitats and potential habitats are sensitive to RF and BP, while prediction of less probable habitats is relatively sensitive to the number of k-fold CVs. Accuracy of the model is also highly correlated with the RF (r = −0.75, p < 0.001), which has influenced the extent of potential and high probable habitat projections. We conclude that SDMs should be supplemented with the information on sensitive model parameters and the uncertainty associated with the model parameters for improved objectivity and reproducibility of research findings related to species conservation planning.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Abdelaal M, Fois M, Fenu G, Bacchetta G (2019) Using MaxEnt modeling to predict the potential distribution of the endemic plant Rosa arabica Crép. in Egypt. Eco Inform 50:68–75. https://doi.org/10.1016/j.ecoinf.2019.01.003
Alsamadisi AG, Tran LT, Papeş M (2020) Employing inferences across scales: integrating spatial data with different resolutions to enhance Maxent models. Ecol Model 415:108857. https://doi.org/10.1016/j.ecolmodel.2019.108857
Anderson RP, Gonzalez I (2011) Species-specific tuning increases robustness to sampling bias in models of species distributions: an implementation with Maxent. Ecol Model 222:2796–2811. https://doi.org/10.1016/j.ecolmodel.2011.04.011
Araujo M, New M (2007) Ensemble forecasting of species distributions. Trends Ecol Evol 22:42–47. https://doi.org/10.1016/j.tree.2006.09.010
Barbet-Massin M, Jiguet F, Albert CH, Thuiller W (2012) Selecting pseudo-absences for species distribution models: how, where and how many?: how to use pseudo-absences in niche modelling? Methods Ecol Evol 3:327–338. https://doi.org/10.1111/j.2041-210X.2011.00172.x
Bean WT, Stafford R, Brashares JS (2012) The effects of small sample size and sample bias on threshold selection and accuracy assessment of species distribution models. Ecography 35:250–258. https://doi.org/10.1111/j.1600-0587.2011.06545.x
Brockmann D, Morgenroth E (2007) Comparing global sensitivity analysis for a biofilm model for two-step nitrification using the qualitative screening method of Morris or the quantitative variance-based Fourier Amplitude Sensitivity Test (FAST). Water Sci Technol 56:85–93. https://doi.org/10.2166/wst.2007.600
Cao Y, DeWalt RE, Robinson JL et al (2013) Using Maxent to model the historic distributions of stonefly species in Illinois streams: the effects of regularization and threshold selections. Ecol Model 259:30–39. https://doi.org/10.1016/j.ecolmodel.2013.03.012
Champion HG, Seth SK (1968) A revised survey of the forest types of India. Manager of Publications, Delhi
Convertino M, Muñoz-Carpena R, Chu-Agor ML et al (2014) Untangling drivers of species distributions: global sensitivity and uncertainty analyses of MaxEnt. Environ Model Softw 51:296–309. https://doi.org/10.1016/j.envsoft.2013.10.001
Dhyani S, Kadaverugu R, Dhyani D et al (2018) Predicting impacts of climate variability on habitats of Hippophae salicifolia (D. Don) (Seabuckthorn) in Central Himalayas: future challenges. Eco Inform 48:135–146. https://doi.org/10.1016/j.ecoinf.2018.09.003
Dhyani S, Kadaverugu R, Pujari P (2020) Predicting impacts of climate variability on Banj oak (Quercus leucotrichophora A. Camus) forests: understanding future implications for Central Himalayas. Reg Environ Chang 20:113. https://doi.org/10.1007/s10113-020-01696-5
Dhyani A, Kadaverugu R, Nautiyal BP, Nautiyal MC (2021) Predicting the potential distribution of a critically endangered medicinal plant Lilium polyphyllum in Indian Western Himalayan Region. Reg Environ Chang 21:30. https://doi.org/10.1007/s10113-021-01763-5
Elith J, Graham CH, Anderson R et al (2006) Novel methods improve prediction of species’ distributions from occurrence data. Ecography 29:129–151. https://doi.org/10.1111/j.2006.0906-7590.04596.x
Feng X, Park DS, Walker C et al (2019) A checklist for maximizing reproducibility of ecological niche models. Nat Ecol Evol 3:1382–1395. https://doi.org/10.1038/s41559-019-0972-5
Girard S, Mallet V, Korsakissok I, Mathieu A (2016) Emulation and Sobol’ sensitivity analysis of an atmospheric dispersion model applied to the Fukushima nuclear accident. J Geophys Res Atmos 121:3484–3496. https://doi.org/10.1002/2015JD023993
Hallgren W, Santana F, Low-Choy S et al (2019) Species distribution models can be highly sensitive to algorithm configuration. Ecol Model 408:108719. https://doi.org/10.1016/j.ecolmodel.2019.108719
Jaxa-Rozen M, Kwakkel J (2018) Tree-based ensemble methods for sensitivity analysis of environmental models: a performance comparison with Sobol and Morris techniques. Environ Model Softw 107:245–266. https://doi.org/10.1016/j.envsoft.2018.06.011
Jaynes ET (1957) Information theory and statistical mechanics. Phys Rev 106:620
Koo H, Iwanaga T, Croke BFW et al (2020) Position paper: sensitivity analysis of spatially distributed environmental models- a pragmatic framework for the exploration of uncertainty sources. Environ Model Softw 134:104857. https://doi.org/10.1016/j.envsoft.2020.104857
Kujala H, Moilanen A, Araújo MB, Cabeza M (2013) Conservation planning with uncertain climate change projections. PLoS One 8:e53315. https://doi.org/10.1371/journal.pone.0053315
Kumar D, Singh A, Kumar P et al (2020) Sobol sensitivity analysis for risk assessment of uranium in groundwater. Environ Geochem Health 42:1789–1801. https://doi.org/10.1007/s10653-020-00522-5
Liu J, Dietz T, Carpenter SR et al (2007) Complexity of coupled human and natural systems. Science 317:1513–1516. https://doi.org/10.1126/science.1144004
Lobo JM, Tognelli MF (2011) Exploring the effects of quantity and location of pseudo-absences and sampling biases on the performance of distribution models with limited point occurrence data. J Nat Conserv 19:1–7. https://doi.org/10.1016/j.jnc.2010.03.002
Merow C, Smith MJ, Silander JA (2013) A practical guide to MaxEnt for modeling species’ distributions: what it does, and why inputs and settings matter. Ecography 36:1058–1069. https://doi.org/10.1111/j.1600-0587.2013.07872.x
Nossent J, Elsen P, Bauwens W (2011) Sobol’ sensitivity analysis of a complex environmental model. Environ Model Softw 26:1515–1525. https://doi.org/10.1016/j.envsoft.2011.08.010
Perz SG, Muñoz-Carpena R, Kiker G, Holt RD (2013) Evaluating ecological resilience with global sensitivity and uncertainty analysis. Ecol Model 263:174–186. https://doi.org/10.1016/j.ecolmodel.2013.04.024
Phillips SJ, Anderson RP, Schapire RE (2006) Maximum entropy modeling of species geographic distributions. Ecol Model 190:231–259. https://doi.org/10.1016/j.ecolmodel.2005.03.026
Phillips SJ, Dudík M, Elith J et al (2009) Sample selection bias and presence-only distribution models: implications for background and pseudo-absence data. Ecol Appl 19:181–197. https://doi.org/10.1890/07-2153.1
Pianosi F, Wagener T (2015) A simple and efficient method for global sensitivity analysis based on cumulative distribution functions. Environ Model Softw 67:1–11. https://doi.org/10.1016/j.envsoft.2015.01.004
Pickett STA, Cadenasso ML, Grove JM (2005) Biocomplexity in coupled natural–human systems: a multidimensional framework. Ecosystems 8:225–232. https://doi.org/10.1007/s10021-004-0098-7
Porfirio LL, Harris RMB, Lefroy EC et al (2014) Improving the use of species distribution models in conservation planning and management under climate change. PLoS One 9:e113749. https://doi.org/10.1371/journal.pone.0113749
Purohit S, Rawat N (2021) MaxEnt modeling to predict the current and future distribution of Clerodendrum infortunatum L. under climate change scenarios in Dehradun district, India. Model Earth Syst Environ 8:2051–2063. https://doi.org/10.1007/s40808-021-01205-5
R Core Team (2017) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna
Raman S, Shameer TT, Sanil R et al (2020) Protrusive influence of climate change on the ecological niche of endemic brown mongoose (Herpestes fuscus fuscus): a MaxEnt approach from Western Ghats, India. Model Earth Syst Environ 6:1795–1806. https://doi.org/10.1007/s40808-020-00790-1
Razavi S, Gupta HV (2016) A new framework for comprehensive, robust, and efficient global sensitivity analysis: 1. Theory. Water Resour Res 52:423–439. https://doi.org/10.1002/2015WR017558
Saltelli A (2002) Making best use of model evaluations to compute sensitivity indices. Comput Phys Commun 145:280–297. https://doi.org/10.1016/S0010-4655(02)00280-1
Saltelli A, Annoni P (2010) How to avoid a perfunctory sensitivity analysis. Environ Model Softw 25:1508–1517. https://doi.org/10.1016/j.envsoft.2010.04.012
Saltelli A, Tarantola S, Chan KP-S (1999) A quantitative model-independent method for global sensitivity analysis of model output. Technometrics 41:39–56. https://doi.org/10.1080/00401706.1999.10485594
Saltelli A, Ratto M, Andres T et al (2008) Global sensitivity analysis: the primer. Wiley
Saltelli A, Annoni P, Azzini I et al (2010) Variance based sensitivity analysis of model output. Design and estimator for the total sensitivity index. Comput Phys Commun 181:259–270. https://doi.org/10.1016/j.cpc.2009.09.018
Singh G, Padalia H, Rai I et al (2016) Spatial extent and conservation status of Banj oak (Quercus leucotrichophora A. Camus) forests in Uttarakhand, Western Himalaya. Trop Ecol 57:255–262
Snowling SD, Kramer JR (2001) Evaluating modelling uncertainty for model selection. Ecol Model 138:17–30. https://doi.org/10.1016/S0304-3800(00)00390-2
Sobol IM (1993) Sensitivity estimates for nonlinear mathematical models. Mathemat Modell Comput Exper 1:407–414
Song W, Kim E, Lee D et al (2013) The sensitivity of species distribution modeling to scale differences. Ecol Model 248:113–118. https://doi.org/10.1016/j.ecolmodel.2012.09.012
Townsend Peterson A, Papeş M, Eaton M (2007) Transferability and model evaluation in ecological niche modeling: a comparison of GARP and Maxent. Ecography 30:550–560. https://doi.org/10.1111/j.0906-7590.2007.05102.x
Vanuytrecht E, Raes D, Willems P (2014) Global sensitivity analysis of yield output from the water productivity model. Environ Model Softw 51:323–332. https://doi.org/10.1016/j.envsoft.2013.10.017
Verma AK, Garkoti SC (2019) Population structure, soil characteristics and carbon stock of the regenerating banj oak forests in Almora, Central Himalaya. Forest Science and Technology. https://www.tandfonline.com/doi/abs/10.1080/21580103.2019.1620135
Voosen P (2019) New climate models predict a warming surge. Science. https://doi.org/10.1126/science.aax7217
Yi Y, Cheng X, Yang Z-F, Zhang S-H (2016) Maxent modeling for predicting the potential distribution of endangered medicinal plant (H. riparia Lour) in Yunnan, China. Ecol Eng 92:260–269. https://doi.org/10.1016/j.ecoleng.2016.04.010
Zhan C, Song X, Xia J, Tong C (2013) An efficient integrated approach for global sensitivity analysis of hydrological model parameters. Environ Model Softw 41:39–52. https://doi.org/10.1016/j.envsoft.2012.10.009
Zhang X, Trame M, Lesko L, Schmidt S (2015) Sobol sensitivity analysis: a tool to guide the development and evaluation of systems pharmacology models. CPT Pharmacometrics Syst Pharmacol 4:69–79. https://doi.org/10.1002/psp4.6
Acknowledgments
The authors sincerely thank the support extended by the Knowledge Resource Center of CSIR-National Environmental Engineering Research Institute in processing the manuscript having the reference number CSIR-NEERI/KRC/2021/JAN/CTMD-WTMD/1.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.
About this chapter
Cite this chapter
Kadaverugu, R., Dhyani, S., Kadaverugu, A., Biniwale, R. (2023). Global Sensitivity and Uncertainty Analysis of MaxEnt Model: Implications in Species Habitat Projections. In: Dhyani, S., Adhikari, D., Dasgupta, R., Kadaverugu, R. (eds) Ecosystem and Species Habitat Modeling for Conservation and Restoration. Springer, Singapore. https://doi.org/10.1007/978-981-99-0131-9_7
Download citation
DOI: https://doi.org/10.1007/978-981-99-0131-9_7
Published:
Publisher Name: Springer, Singapore
Print ISBN: 978-981-99-0130-2
Online ISBN: 978-981-99-0131-9
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)