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Modelling the Migration of Pathogens in Agricultural Settings: From Surface Land to Groundwater Reservoirs

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Microbial Biodiversity, Biotechnology and Ecosystem Sustainability

Abstract

Groundwater is an essential natural resource for the preservation of the natural ecosystems, as well as, for human life and health as for many communities it is their sole source to supply all their daily water needs (Oki and Kanae 2006). In brief, groundwater aquifers are formed when freshwater stores in underground saturated geological formations refilled by alluvial recharge. As water begins to seep into the ground, it enters to the unsaturated zone or vadose zone (a mixture of soil, water and air) that ideally acts as a natural filter retaining pollutants suspended before reaching the saturated zone (Stefanakis et al. 2015). It is estimated that water for human consumption comprises of up to underground water (95–96%) and consequently when water scarcity occurs, groundwater exploitation appears the easiest way to fulfill the growing water demands (Oki and Kanae 2006; Giordano 2009). Thus, the increasing reports on contamination of groundwater resources has a direct impact in all living organisms which depend directly or indirectly on the hydrologic cycle of the reservoir (Fig. 1).

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References

  • Amoah ID, Kumari S, Bux F (2020) Coronaviruses in wastewater processes: source, fate and potential risks. Environ Int 143:105962. Advance online publication. https://doi.org/10.1016/j.envint.2020.105962

    Article  CAS  Google Scholar 

  • Bhattarai R, Davidson PC, Kalita PK, Kuhlenschmidt MS (2017) Modeling effect of cover condition and soil type on rotavirus transport in surface flow. J Water Health 15(4):545–554

    Article  Google Scholar 

  • Bitton G, Harvey RW (1992) Transport of pathogens through soil. In: Mitchell R (ed) Environmental microbiology. Wiley, New York

    Google Scholar 

  • Borowski H, Thompson RCA, Armstrong T, Clode PL (2009) Morphological characterization of Cryptosporidium parvum life-cycle stages in an in vitro model system. Parasitology 137:13–26

    Article  Google Scholar 

  • Bowman DD (2010) Pathogens in rural and agricultural water and watersheds 2010: State of knowledge and future directions. College of Veterinary Medicine, Cornell University. Elsevier

    Google Scholar 

  • Bowman DD, Bowman D (2009) Manure pathogens: manure management, regulations, and water quality protection. McGraw-Hill, New York, NY

    Google Scholar 

  • Bradford SA, Harvey RW (2017) Future research needs involving pathogens in groundwater. Hydrogeol J 25:931–938

    Article  CAS  Google Scholar 

  • Bradford SA, Morales VL, Zhang W, Harvey RW, Packman AI, Mohanram A, Welty C (2013) Transport and fate of microbial pathogens in agricultural settings. Crit Rev Environ Sci Technol 43(8):775–893

    Article  CAS  Google Scholar 

  • Centers for Disease Control and Prevention (2014) Surveillance for waterborne disease outbreaks associated with drinking water. MMWR 64:837–862

    Google Scholar 

  • Chávez A, Maya C, Gibson R, Jiménez B (2011) The removal of microorganisms and organic micropollutants from wastewater during infiltration to aquifers after irrigation of farmland in the Tula Valley. Mexico Environ Pollut 159(5):1354–1362

    Article  Google Scholar 

  • Coffey WT, Kalmykov YP (2004) The Langevin equation: with applications to stochastic problems in physics, chemistry and electrical engineering. World Scientific, Singapore

    Book  Google Scholar 

  • Cotruvo JA, Dufour A, Rees G, Bartram J, Carr R, Cliver DO, Craun GF, Fayer R, Gannon VPJ (2004) Waterborne zoonoses: identification, causes, and control. World Health Organization and IWA, London

    Google Scholar 

  • Domenico PA, Schwartz FW (1998) Physical and chemical hydrogeology, 2nd edn. John Wiley and Sons, Inc., New York

    Google Scholar 

  • Eisenberg JNS, Lei X, Hubbard AH, Brookhart MA, Colford JM (2005) The role of disease transmission and conferred immunity in outbreaks: analysis of the 1993 Cryptosporidium outbreak in Milwaukee, Wisconsin. Am J Epidemiol 161:62–72

    Article  Google Scholar 

  • Elimelech M, Gregory J, Jia X, Williams RA (1995) Particle deposition and aggregation: measurement, modeling, and simulation. Butterworth-Heinemann, Oxford, England

    Google Scholar 

  • Elimelech M, Omelia CR (1990) Kinetics of deposition of colloidal particles in porous-media. Environ Sci Technol 24(10):1528–1536

    Article  CAS  Google Scholar 

  • Engström E, Liu H-H (2015) Modeling bacterial attenuation in on-site wastewater treatment systems using the active region model and column-scale data. Environ Earth Sci 74:4827–4837

    Article  Google Scholar 

  • Gani R, Cameron I, Lucia A, Sin G, Georgiadis M (2012) Process systems engineering, 2. Modeling and simulation. In: Ullmann's Encyclopedia of industrial chemistry. Wiley, Germany

    Google Scholar 

  • Giordano M (2009) Global groundwater? Issues and solutions. Annu Rev Environ Resour 34:7.1–7.26

    Article  Google Scholar 

  • Goltz M, Huang J (2017) Analytical modeling of solute transport in groundwater. John Wiley & Sons, Inc., New Jersey

    Book  Google Scholar 

  • Harvey RW (1997) Microorganisms as tracers in groundwater injection and recovery experiments: a review. FEMS Microbiol Rev 20:461–472

    Article  CAS  Google Scholar 

  • Harvey RW, Harms H (2001) In: Hurst CJ (ed) Transport of microorganisms in the terrestrial subsurface: in situ and laboratory methods. Manual of environmental microbiology. ASM Press, Washington, D.C., pp 753–776

    Google Scholar 

  • Hu B, Teng Y, Zhai Y, Zuo R, Li J, Chen H (2016) Riverbank filtration in China: a review and perspective. J Hydrol 541:914–927

    Article  CAS  Google Scholar 

  • Jarrol EL, Hoff JC, Meyer EA (1984) In: Erlandsen SL, Meyer EA (eds) Resistance of cysts to disinfection agents in giardia and giardiasis biology, pathogenesis, and epidemiology. Plenum Press, New York, p 417

    Google Scholar 

  • Jarvis N, Larsbo M (2012) MACRO (v5.2): model use, calibration, and validation. Trans ASABE 55:1413–1423. https://agris.fao.org/agris-search/search.do?recordID=SE9311797

    Article  Google Scholar 

  • Kamai T, Nassar MK, Nelson KE, Ginn TR (2015) Colloid filtration prediction by mapping the correlation-equation parameters from transport experiments in porous media. Water Resour Res 51(11):8995–9012

    Article  Google Scholar 

  • Klaine SJ, Alvarez PJJ, Batley GE, Fernandez TF, Handy RD, Lyon DY, Mahendra S, McLaughlin MJ, Lead JR (2008) Nanomaterials in the environment: behavior, fate, bioavailability, and effects. Environ Toxicol Chem 27(9):1825–1851

    Article  CAS  Google Scholar 

  • Koelsch RK, Lorimor JC, Mankin KR (2006) Vegetative treatment systems for management of open lot runoff: review of literature. Appl Eng Agric 22:141–153

    Article  Google Scholar 

  • Kroes JG, van Dam JC, Bartholomeus RP, Groenendijk P, Heinen M, Hendriks RFA, Mulder HM, Supit I, van Walsum PEV (2017). https://www.swap.alterra.nl/

  • Lapworth DJ, Baran N, Stuart ME, Ward RS (2012) Emerging organic contaminants in groundwater: a review of sources, fate and occurrence. Environ Pollut 163:287–303

    Article  CAS  Google Scholar 

  • Li G, Nie X, Chen J, Jiang Q, An T, Wong PK, Zhang H, Zhao H, Yamashita H (2015) Enhanced visible-light-driven photocatalytic inactivation of Escherichia coli using g-C3N4/TiO2 hybrid photocatalysts synthesized using a hydrothermal-calcination approach. Water Res 86:17–24

    Article  CAS  Google Scholar 

  • Li K, Ma H (2019) Rotation and retention dynamics of rod-shaped colloids with surface charge heterogeneity in sphere-in-cell porous media model. Langmuir 35(16):5471–5483

    Article  CAS  Google Scholar 

  • Li T, Lin H, Zhang Y, Li M, Wang D, Che Y, Zhu Y, Li S, Zhang J, Ge S, Zhao Q, Xia N (2014) Improved characteristics and protective efficacy in an animal of E. coli-derived recombinant double-layered rotavirus virus-like particles. Vaccine 32(17):1921–1931

    Article  CAS  Google Scholar 

  • Long W, Hilpert M (2009) A correlation for the collector efficiency of Brownian particles in clean-bed filtration in sphere packings by a lattice-boltzmann method. Environ Sci Technol 43(12):4419–4424

    Article  CAS  Google Scholar 

  • Ma H, Johnson WP (2010) Colloid retention in porous media of various porosities: predictions by the hemispheres-in-cell model. Langmuir 26(3):1680–1687

    Article  CAS  Google Scholar 

  • Macler BA, Merkle JC (2000) Current knowledge on groundwater microbial pathogens and their control. Hydrogeol J 8:29–40

    Article  Google Scholar 

  • Marin EE, Quevedo IR and Rivera-Toledo M (2019) Modeling the mobility of pathogenic biocolloids in groundwater in Morales M. A. (Presidency), XL National Meeting of AMIDIQ, Huatulco (Mexico), May 7–10, 2019

    Google Scholar 

  • Mattison K, Shukla A, Cook A, Pollari F, Friendship R, Kelton D, Bidawid S, Farber JM (2007) Human noroviruses in swine and cattle. Emerging Infect Dis 13:1184–1188

    Article  CAS  Google Scholar 

  • Mawdsley JR, Bardgett RD, Merry RJ, Pain BF, Theodorou MK (1995) Pathogens in livestock waste, their potential for movement through soil and environmental pollution. Appl Soil Ecol 2:1–15

    Article  Google Scholar 

  • Meng XJ, Wiseman B, Elvinger F, Guenette DK, Toth TE, Engle RE, Emerson SU, Purcell RH (2002) Prevalence of antibodies to hepatitis E virus in veterinarians working with swine and in normal blood donors in the United States and other countries. J Clin Microbiol 40:117–122

    Article  CAS  Google Scholar 

  • Messina F, Marchisio DL, Sethi R (2015) An extended and total flux normalized correlation equation for predicting ingle-collector efficiency. J Colloid Interface Sci 446:185–193

    Article  CAS  Google Scholar 

  • Molnar IL, Gerhard JI, Willson CS, O'Carroll DM (2015) The impact of immobile zones on the transport and retention of nanoparticles in porous media. Water Resour Res 51(11):8973–8994

    Article  Google Scholar 

  • Molnar IL, Pensini E, Asad MA, Mitchell CA, Nitsche LC, Pyrak-Nolte LJ, Miño GL, Krol MM (2019) Colloid transport in porous media: a review of classical mechanisms and emerging topics. Transp Porous Media 130:129–156

    Article  Google Scholar 

  • Nelson KE, Ginn TR (2011) New collector efficiency equation for colloid filtration in both natural and engineered flow conditions. Water Resour Res 47(5):17

    Article  Google Scholar 

  • Oki T, Kanae S (2006) Global hydrological cycles and world water resources. Science 313(5790):1068–1072

    Article  CAS  Google Scholar 

  • Paraskeva CA, Burganos VN, Payatakes AC (1991) Three-dimensional trajectory analysis of particle deposition in constricted tubes. Chem Eng Commun 108(1):23–48

    Article  CAS  Google Scholar 

  • Rajagopalan R, Tien C (1976) Trajectory analysis of deep-bed filtration with sphere-in-cell porous-media model. AI Ch E J 22(3):523–533

    Article  CAS  Google Scholar 

  • Rosen BH, Croft R, Atwill ER, Wade S, and Stehman S (2000) Waterborne pathogens in agricultural watersheds. Technical note 2, p. 1–64. Watershed Science Institute, University of Vermont, Burlington, Vt

    Google Scholar 

  • Sen TK (2011) Processes in pathogenic biocolloidal contaminants transport in saturated and unsaturated porous media: a review. Water Air Soil Pollut 216(1–4):239–256

    Article  CAS  Google Scholar 

  • Shampine LF (2005) Solving hyperbolic PDEs in MATLAB. Appl Numer Analy Comput Math 2(3):346–358

    Article  Google Scholar 

  • Shiklomanov I (1993) World fresh water resources in water in crisis: a guide to the World’s fresh water resources. Oxford University Press, New York

    Google Scholar 

  • Šimůnek (2021) M. HYDRUS: software for flow and transport modeling in variably saturated media. https://www.pc-progress.com/en/Default.aspx?hydrus-3d [visited 07/23/2021]

  • Smith JE, Perdek JM (2004) Assessment and management of watershed microbial contaminants. Crit Rev Environ Sci Technol 34:109–139

    Article  CAS  Google Scholar 

  • Stefanakis AI, Akratos CA, Tsihrintzis VA (2014) Vertical flow constructed wetlands: eco-engineering systems for wastewater and sludge treatment. Elsevier Publishing, Amsterdam

    Book  Google Scholar 

  • Stefanakis AI, Zouzias D and Marsellos A (2015) Groundwater pollution: human and natural sources and risks in Environmental Sci. and Eng. Vol. 4: Water Pollution

    Google Scholar 

  • Stewart WE, Lightfoot EN, Bird RB, Klingenberg DJ (2014) Introductory transport phenomena. John Wiley and Sons, Inc., New York

    Google Scholar 

  • Strauch D (1987) Hygiene of animal waste management. In: Animal production and environmental health. Elsevier Science, Amsterdam

    Google Scholar 

  • Taylor R, Cronin A, Pedley S, Barker J, Atkinson T (2004) The implications of groundwater velocity variations on microbial transport and wellhead protection-review of field evidence. FEMS Microbiol Ecol 49:17–26

    Article  CAS  Google Scholar 

  • Torkzaban S, Hocking M, Bradford SA, Tazehkand SS, Sasidharan SS, Šimůnekd J (2019) Modeling virus transport and removal during storage and recovery in heterogeneous aquifers. J Hydrol 578:124082

    Article  Google Scholar 

  • Tufenkji N (2007) Colloid and microbe migration in granular environments: a discussion of modelling methods. In: Frimmel FH, Von Der Kammer F, Flemming HC (eds) Colloidal transport in porous media. Springer, Berlin, Heidelberg

    Google Scholar 

  • Tufenkji N, Elimelech M (2004) Correlation equation for predicting single-collector efficiency in physicochemical filtration in saturated porous media. Environ Sci Technol 38(2):529–536

    Article  CAS  Google Scholar 

  • Tufenkji N & Emelko M (2011) Fate and transport of microbial contaminants in groundwater. Encyclopedia of Environmental Health, 715–726. Elsevier

    Google Scholar 

  • Tufenkji N, Miller GF et al (2004) Transport of Cryptosporidium oocysts in porous media: role of straining and physicochemical filtration. Environ Sci Technol 38:5932–5938

    Article  CAS  Google Scholar 

  • Tyrrel SF, Quinton JN (2003) Overland flow transport of pathogens from agricultural land receiving faecal wastes. J Appl Microbiol 94:87–93

    Article  Google Scholar 

  • U.S. Environmental Protection Agency. (1996) National water quality inventory, report to Congress. Rep.841-R-97–008. Washington, DC

    Google Scholar 

  • U.S. Environmental Protection Agency. (2010) Watershed assessment, tracking and environmental results. http://iaspub.epa.gov/waters10/attains_nationcy.control

  • Yao KM, Habibian MT, O’Melia CR (1971) Water and wastewater filtration. Concepts and applications. Environ Sci Technol 5(11):1105–1112

    Article  CAS  Google Scholar 

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Acknowledgements

The authors acknowledge the financial support of the Dirección de Investigación (DINV) at UIA through project DINV-0054 and to the Consejo Nacional de Ciencia y Tecnología Mexicano (CONACyT) through the postgraduate fellowship (No.375858) awarded to E.M-A. We also thank Ernesto Javier Murillo Mata for his help and valuable contribution adapting the figures used in this manuscript.

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Correspondence to Iván R. Quevedo .

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Marín-Angel, E., Rivera-Toledo, M., Quevedo, I.R. (2023). Modelling the Migration of Pathogens in Agricultural Settings: From Surface Land to Groundwater Reservoirs. In: Aguilar, C.N., Abdulhameed, S., Rodriguez-Herrera, R., Sugathan, S. (eds) Microbial Biodiversity, Biotechnology and Ecosystem Sustainability. Springer, Singapore. https://doi.org/10.1007/978-981-19-4336-2_13

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