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Molecular Identification of Insect Pests of Horticultural Crops

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Trends in Horticultural Entomology

Abstract

Accurate identification of species is fundamental to both basic and applied research. Classification and identification of various life forms, particularly insects, has been a major challenge to the scientific community with the dwindling interest in taxonomy and fund availability. In quarantine and plant protection activities, their immature stages are met with and diagnosis of these is important to foster a rapid, accurate species identification that is crucial in various spheres of pest management like biological control, insecticide resistance management, preventing the entry of invasive and alien species, and insect vector management that include identification of biotypes, cryptic species. With the advent of molecular biology and molecular tools, identification of life forms including insects has become quick, precise, and easy. Deoxyribonucleic acid (DNA) barcoding is an alternative way to accurately identify species, which also complements conventional taxonomy. DNA barcoding enables even a non-specialist to identify a species even using immature stages like egg, larva, nymph, or pupa. The mitochondrial cytochrome c oxidase subunit I (mtCO-I) region marker was used in the species diagnosis and genetic diversity research. The polymerase chain reaction (PCR) method developed effectively identified biotypes of insect pests. Molecular identification is applied to a great extent in sucking pests including thrips, mealybugs, whiteflies, aphids, and leafhoppers, besides fruit flies.

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References

  • Abdullah, I., Winter, S., Atiri, G. I., & Thottappilly, G. (2003). Molecular characterization of whitefly, Bemisia tabaci (Hemiptera:Aleyrodidae) populations infesting cassava. Bulletin of Entomological Research, 93(2), 97–106.

    Google Scholar 

  • Ahmad, J. N., Sharif, T., Samina, J. N., Maqsood, S., & Zafar, F. (2019). Molecular identification and characterization of fruit flies of genus Bactrocera (Diptera: Tephritidae) in Pakistan. Pakistan Journal of Zoology, 51, 2275–2280.

    CAS  Google Scholar 

  • Alhudaib, K. A., Sabour Rezk, A. A., Abdel-Banat, B. M. A., & Soliman, A. M. (2014). Molecular identification of the biotype of whitefly (Bemisia tabaci) inhabiting the eastern region of Saudi Arabia. Journal of Biological Sciences, 14, 494–500.

    Google Scholar 

  • Arnemann, J. A., Roxburgh, S., Walsh, T., Guedes, J., Gordon, K., Smagghe, G., & Tay, W. T. (2019). Multiple incursion pathways for Helicoverpa armigera in Brazil show its genetic diversity spreading in a connected world. Scientific Reports, 9, 19380. https://doi.org/10.1038/s41598-019-55919-9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ashfaq, M., Ara, J., Raza, N. A., Hebert, P. D. N., & Mansoor, S. (2011). Molecular phylogenetic analysis of a scale insect (Drosicha mangiferae; Hemiptera: Monophlebidae) infesting mango orchards in Pakistan. European Journal of Entomology, 108, 553–559.

    Google Scholar 

  • Asokan, R., Chaitanya, B. N., Rebijith, K. B., Krishna Kumar, N. K., Viraktamath, C. A., & Ramamurthy, V. V. (2015). COI based molecular identification of mango leaf hoppers (Hemiptera: Cicadellidae) in India. Indian Journal of Biotechnology, 14, 260–263.

    CAS  Google Scholar 

  • Asokan, R., Nageshaa, S. N., Manamohana, M., Krishnakumar, N. K., Mahadevaswamya, H. M., Rebijitha, K. B., Prakasha, M. N., & Sharath, C. G. (2012a). Molecular diversity of Helicoverpa armigera Hubner (Noctuidae:Lepidoptera) in India. Oriental Insects, 46(2), 130–143.

    Google Scholar 

  • Asokan, R., Rebijith, K. B., & Krishna Kumar, N. K. (2012b). Genetic diversity of tomato fruit borer, Helicoverpa armigera Hübner (lepidoptera: Noctuidae) inferred by mitochondrial cytochrome oxidase-I (mtCO-I). Pest Management in Horticultural Ecosystems, 18, 65–70.

    Google Scholar 

  • Asokan, R., Rebijith, K. B., Krishna, V., Krishna, K. N. K., Jacob, T. K., Devasahayam, S. D., Tyagi, K., & Sujeesh, E. S. (2012d). Molecular diversity of cardamom thrips, Sciothrips cardamomi (Ramakrishna) (Thripidae: Thysanoptera). Oriental Insects, 47, 55–64.

    Google Scholar 

  • Asokan, R., Rebijith, K. B., Singh, S. K., & Ramamurthy, V. V. (2013). Life stage independent identification of fruit flies (Diptera: Tephritidae) using 28S rDNA sequences. The Bioscan, 8, 1–10.

    Google Scholar 

  • Asokan, R., Rebijith, K. B., Singh, S. K., Sidhu, A. S., Siddharthan, S., Karanth, P. K., Elango, R., & Ramamurthy, V. V. (2011a). Molecular identification and phylogeny of Bactrocera species (Diptera: Tephritidae). Florida Entomologist, 94(4), 1026–1035.

    CAS  Google Scholar 

  • Asokan, R., Rebijith, K. B., Srikumar, K. K., Shivarama, B. P., & Ramamurthy, V. V. (2012c). Molecular identification and diversity of Helopeltis antonii and Helopeltis theivora (Hemiptera: Miridae) in India. Florida Entomologist, 95(2), 350–358.

    CAS  Google Scholar 

  • Asokan, R., Joshi, S., Krishna Kumar, N. K. and Rebijith, K. B. 2011b. DNA barcode for important sap sucking insect pests of horticultural crops. IIHR Tech Bulletin, 57p.

    Google Scholar 

  • Asokan, R., Krishna Kumar, N. K., Kumar, V., & Ranganath, H. R. (2007). Molecular differences in mitochondrial cytochrome oxidase I (mtCOI) gene and development of a species-specific marker for onion thrips, Thrips tabaci Lindeman and melon thrips, T. palmi Karny (Thysanoptera: Thripidae), vectors of tospoviruses (Bunyaviridae). Bulletin of Entomological Research, 97, 461–470.

    CAS  PubMed  Google Scholar 

  • Assefa, Y., & Malindzisa, N. (2018). Molecular identification of mealybugs (Hemiptera: Pseudococcidae) on cultivated, ornamental and wild host plants in Swaziland. Asian Research Journal of Agriculture, 9(1), 1–10.

    Google Scholar 

  • Banta, G., Jindal, V., Mohindru, B., Sharma, S., Kaur, J., & Gupta, V. K. (2016). Molecular phylogenetic analysis of mango mealybug, Drosicha mangiferae from Punjab. Journal of Environmental Biology, 37, 49–55.

    CAS  PubMed  Google Scholar 

  • Behere, G. T., Tay, W. T., Russell, D. A., Heckel, D. G., Appleton, B. R., Kranthi, K. R., & Batterham, P. (2007). Mitochondrial DNA analysis of field populations of Helicoverpa armigera (lepidoptera: Noctuidae) and of its relationship to H. zea. BMC Evolutionary Biology, 7, 117. https://doi.org/10.1186/1471-2148-7-117

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bhau, B. S., Mech, J., Borthakur, S., Bhuyan, M., & Bhattacharyya, P. R. (2014). Morphological and genetic diversity studies among populations of tea mosquito bug, Helopeltis theivora from Assam, India. Molecular Biology Reports, 41(12), 7845–7856.

    CAS  PubMed  Google Scholar 

  • Boopathi, T., Mohankumar, S., Karuppuchamy, P., Kalyanasundaram, M., Ravi, M., Preetha, B., Aravintharaj, R., & Manju, T. (2014). Genetic evidence for diversity of spiraling whitefly, Aleurodicus dispersus (Hemiptera: Aleyrodidae) populations in India. Florida Entomologist, 97(3), 1115–1122.

    Google Scholar 

  • Calatayud P.A. and Le Rü B (Eds). 2006. Cassava and mealybugs. IRD Éditions Institut De Recherche Pour Le Développement, Paris, 2006, pp. 11–22.

    Google Scholar 

  • Castillo, C., Zhen, F. U., & Burckhardt, D. (2019). First record of the tomato potato psyllid Bactericera cockerelli from South America Carmen. Bulletin of Insectology, 72(1), 85–91.

    Google Scholar 

  • Chaitanya, B. N., Asokan, R., Rebijith, K. B., Rao, C. N., Ram, K. P., Krishna, K. N., & K. (2016). Molecular identification and diversity of Asian citrus psyllids using mtCoI gene sequences. Pest Management in Horticultural Ecosystems, 22(1), 51–57.

    Google Scholar 

  • Chakrabortya, R., Singhaa, D., Kumar, V., Pakrashia, A., Shantanu, K., Chandraa, K., Patnaikb, S., & Tyagia, K. (2019). DNA barcoding of selected Scirtothrips species (Thysanoptera) from India. Mitochondrial DNA Part B, 4(2), 2710–2714.

    Google Scholar 

  • Chandrika M. Josephrajkumar, A., Babu M, Prathibha, P. S., Krishnakumar, V., Hegde, V. and Chowdappa, P. (2017). Invasive rugose spiralling whitefly on coconut, Technical Bulletin No. 117, (Centenary Series 60), ICAR-CPCRI, Regional Station, Kayamkulam, 16 p.

    Google Scholar 

  • Chang H, Liu Q, Hao D., Liu Y., An Y, Qian L. and Yang X.2013. DNA barcodes and molecular diagnostics for distinguishing introduced Xyleborus (coleoptera: Scolytinae) species in China, Mitochondrial DNA, 25:1, 63–69, DOI: 10.3109/19401736.2013.779260.

    Google Scholar 

  • Chen, P., Liu, Q. Z., Qiao, X. F., Wang, J. W., & Zhang, T. (2018). Identification and phylogenetic analysis of pear psyllids (Hemiptera: Psyllidae) in Chinese pear orchards. Journal of Economic Entomology, 111(6), 2908–2913.

    CAS  PubMed  Google Scholar 

  • Correa, M. C., Germain, J. F., Malausa, T., & Zaviezo, T. (2012). Molecular and morphological characterization of mealybugs (Hemiptera: Pseudococcidae) from Chilean vineyards. Bulletin of Entomological Research, 102(5), 524–530.

    CAS  PubMed  Google Scholar 

  • Cuervo, I. M., Calatayud, P. A., Múnera, S. D., Bellotti, A. C., & Calvert, L. A. (2002). Molecular identification of cassava mealybugs [poster] (p. 1). Centro Internacional de Agricultura Tropical (CIAT).

    Google Scholar 

  • Daane, K. M., Middleton, M. C., Sforza, R., Cooper, M. L., Walton, V. A., Walsh, D. B., Zaviezo, T., & Almeida, P. P. (2011). Development of a multiplex PCR for identification of vineyard mealybugs. Molecular Ecology and Evolution, 40(6), 1595–1603.

    CAS  Google Scholar 

  • De Grazia, A., Marullo, R., & Moritz, G. (2016). Molecular diagnosis of native and quarantine pest thrips of southern European citrus orchards. Bulletin of Insectology, 69(1), 1–6.

    Google Scholar 

  • Deng, J., Li, H., Wang, X., Yu, F., Zhang, Y., & Wu, S. (2016). Molecular identification of two morphologically similar Eulecanium species: E. giganteum and E. kuwanai (Hemiptera: Coccidae). The Canadian Entomologist, 148(1), 1–7.

    Google Scholar 

  • Dewer, Y., Abdel-Fattah, R. S., & Schneider, S. A. (2018). Molecular and morphological identification of the mealybug, Phenacoccus solani Ferris (Hemiptera: Pseudococcidae): First report in Egypt. Bulletin OEPP EPPO Bulletin, 48(1), 155–159.

    Google Scholar 

  • Dickey, A. M., Stocks, I. C., Smith, T., Osborne, L., & McKenzie, C. L. (2015). DNA barcode development for three recent exotic whitefly (Hemiptera: Aleyrodidae) invaders in Florida. Florida Entomologist, 98(2), 473–478.

    Google Scholar 

  • Edwards, R., Carraher, C., Poulton, J., Sandanayaka, M., Todd, J. H., Dobson, S., Mauchline, N., Hill, G., MCkenna, C., & Newcomb, R. D. (2008). DNA diagnostics of three armored scale species on kiwifruit in New Zealand. Journal of Economic Entomology, 101, 1944–1949.

    CAS  PubMed  Google Scholar 

  • Ellango, R., Asokan, R., & Mahmood, R. (2014). Host specific molecular variations in Bemisia tabaci (G.) as revealed by using mitochondrial and ribosomal marker. The Bioscan, 9, 461–466.

    Google Scholar 

  • Farkas, P., György, Z., Tóth, A., Sojnóczki, A., & Fail, J. (2019). A simple molecular identification method of the Thrips tabaci (Thysanoptera: Thripidae) cryptic species complex. Bulletin of Entomological Research, 1–9. https://doi.org/10.1017/S0007485319000762. (n.d.).

  • Firakea, D. M., Sankarganeshb, E., Sharmaa, B., Firakea, P., Gajanan, D., & Beherea, T. (2018). DNA barcoding confirmed the occurrence of invasive vegetable leafminer, Liriomyza sativae Blanchard (Diptera:Agromyzidae) in Northeast India. Journal of Asia-Pacific Biodiversity, 11, 56–60.

    Google Scholar 

  • Foottit, R. G., Lowery, D. T., Maw, H. E. L., Smirle, M. J., & Lushai, G. (2009). Identification, distribution, and molecular characterization of the apple aphids Aphis pomi and Aphis spiraecola (Hemiptera: Aphididae: Aphidinae). Canadian Entomologist, 141(5), 478–495.

    Google Scholar 

  • Foottit, R. G., Maw, H. E. L., Pike, K. S., & Miller, R. H. (2010). The identity of Pentalonia nigronervosa Coquerel and P. caladii van der Goot (Hemiptera: Aphididae) based on molecular and morphometric analysis. Zootaxa, 2358, 25–38.

    Google Scholar 

  • Frey, J., & Frey, E. B. (1995). Molecular identification of six species of scale insects (Quadraspidiotus sp.) by RAPD-PCR: Assessing the field-specificity of pheromone traps. Molecular Ecology, 4(6), 777–778.

    CAS  Google Scholar 

  • Hadija, M. A., Hamss, H. E., Simiand, C., Maruthi, M. N., Colvin, J., Christopher, A. O., & Delatte, H. (2019). What has changed in the outbreaking populations of the severe crop pest whitefly species in cassava in two decades? Scientific Reports, 9, 14796. https://doi.org/10.1038/s41598-019-50259-0

    Article  CAS  Google Scholar 

  • Hajibabaei, M., Janzen, D. H., Burns, J. M., Hallwachs, W., & Hebert, P. D. N. (2006). DNA barcodes distinguish species of tropical lepidoptera. Proceedings of the National Academy of Sciences of the United States of America, 103, 968–971.

    PubMed  PubMed Central  Google Scholar 

  • HanSong, Y., HeungKim, T., & Roderick, G. K. (2000). Molecular genetic diagnosis of four fruit fly species (Tephritidae). Journal of Asia-Pacific Entomology, 3(2), 89–94.

    Google Scholar 

  • Hebert, P. D. N., & Gregory, T. R. (2005). The promise of DNA barcoding for taxonomy. Systematic Biology, 54, 852–859.

    PubMed  Google Scholar 

  • Hebert, P. D. N., Ratnasignham, S., & deWaard, J. R. (2003b). Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London Series B, 270(Suppl. 1), S96–S99.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hebert, P. D. W., Cywinska, A., Ball, S. L., & deWaard, J. R. (2003a). Biological identification through DNA barcodes. Proceedings of the Royal Society of London Series B, 270, 313–321.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hosseini, R., & Hajizadeh, J. (2011). Molecular identification of three of the most important mealybug species (Hemiptera: Sternorrhyncha: Coccoidea: Pseudococcidae) on ornamental plants in Guilan province, Iran. Zootaxa, 3009, 46–54.

    Google Scholar 

  • Hosseininaveh, F., Nozari, J., Kaydan, M. B., & Hosseininaveh, V. D. (2018). Molecular and morphological identification of pistachio armored scale insects (Hemiptera: Diaspididae), with description of a new species. https://doi.org/10.11646/zootaxa.4200.4.5

  • Indriyanti, D. R., Suputa, S., & Jannah, S. N. (2017). Molecular identification of Bactrocera sp. fruit fly from Muria forest, Central Java, Indonesia. ARPN Journal of Engineering and Applied Sciences, 12(9), 2954–2961.

    CAS  Google Scholar 

  • Jalalizanda, A. R., Mirhendib, H., Karimi, A., Modaresi, M., & Mahmoodia, E. (2012). Morphological and molecular identification aphids of Rosae. APCBEE Procedia, 4, 12–15.

    Google Scholar 

  • Jiang, F., Li, Z., Deng, Y., Wu, J., Liu, R., & Buahom, N. (2013). Rapid diagnosis of the economically important fruit fly, Bactrocera correcta (Diptera: Tephritidae) based on a species-specific barcoding cytochrome oxidase I marker. Bulletin of Entomological Research, 103(3), 363–371.

    CAS  PubMed  Google Scholar 

  • Jiménez, M. P., & Meneses, M. B. (2016). First record of morphological and molecular identification of mealybug Pseudococcus Jackbeardsleyi (Hemiptera: Pseudococcidae) in Costa Rica. Universal Journal of Agricultural Research, 4(4), 125–133.

    Google Scholar 

  • Joshi, S., Lokeshwari, D., Krishna, K. N. K., Manjunatha, H., Verghese, A., & Jalali, S. K. (2014). Wahlgreniella Nervata (Hemiptera: Aphididae), a new pest of rose in India. Florida Entomologist, 97(1), 162–165.

    Google Scholar 

  • Kadirvel, P., Srinivasan, R., Hsu, Y. C., Su, F. C., & Pena, R. D. L. (2013). Application of cytochrome oxidase I sequences for phylogenetic analysis and identification of thrips species occurring on vegetable crops. Journal of Economic Entomology, 106(1), 408–418.

    CAS  PubMed  Google Scholar 

  • Kapantaidaki, D. E., Sadikoglou, E., Tsakireli, D., Kampanis, V., Stavrakaki, M., Schorn, C., Ilias, A., Riga, M., Tsiamis, G., Nauen, R., Skavdis, G., Vontas, J., & Tsagkarakou, A. (2018). Insecticide resistance in Trialeurodes vaporariorum populations and novel diagnostics for kdr mutations. Pest Management Science, 74(1), 59–69. https://doi.org/10.1002/ps.4674. Epub 2017 Sep 11.

    Article  CAS  PubMed  Google Scholar 

  • Karimi, J., Hassani-Kakhki, M., & Awal, M. M. (2010). Identifying thrips (Insecta: Thysanoptera) using DNA barcodes. Journal of Cell and Molecular Research, 2(1), 35–41.

    Google Scholar 

  • Kinyanjui, G., Khamis, F. M., Mohamed, S., Ombura, L. O., Warigia, M., & Ekesi, S. (2016). Identification of aphid (Hemiptera: Aphididae) species of economic importance in Kenya using DNA barcodes and PCR-RFLP-based approach. Bulletin of Entomological Research, 106, 63–72.

    CAS  PubMed  Google Scholar 

  • Kiran, V. S., Asokan, R., Revannavar, R., Mahadeva Swamy, H. M. M., & Ellango, R. (2019). Genetic characterization and DNA barcoding of coffee shot-hole borer, Xylosandrus compactus (Eichhoff) (Coleoptera: Curculionidae: Scolytinae). Mitochondrial DNA Part A. https://doi.org/10.1080/24701394.2019.1659249

  • Koohkanzade, M., Zakiaghl, M., Dhami, M. K., Fekrat, L., & Namaghi, H. S. (2018). Rapid identification of Bactrocera zonata (Dip.: Tephritidae) using TaqMan real-time PCR assay. PLoS One, 13(10), e0205136. https://doi.org/10.1371/journal.pone.0205136

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Landi, L., Gómez, D., Braccini, C. L., Pereyra, V. A., Smith, S. M., & Marvaldi, A. E. (2017). Morphological and molecular identification of the invasive Xylosandrus crassiusculus (coleoptera: Curculionidae: Scolytinae) and its South American range extending into Argentina and Uruguay. Annals of the Entomological Society of America, 110(3), 344–349.

    Google Scholar 

  • Latha, K. R., Krishna, K. N. K., Mahadevaswamy, H. M., Asokan, R., Ranganath, H. R., & Mahmood, R. (2015). Molecular identification and diversity of chilli thrips, Scirtothrips dorsalis Hood (Thysanoptera: Thripidae) employing ITS2 marker. Pest Management in Horticultural Ecosystems, 21, 16–26.

    Google Scholar 

  • Latip, S. N. H., Muhamad, R., Manjeri, G., & Tan, S. G. (2010). Development of microsatellite markers for Helopeltis theivora Waterhouse (Hemiptera: Miridae). African Journal of Biotechnology, 9(28), 4478–4481.

    CAS  Google Scholar 

  • Lemmetty, A., & Vänninen, I. (2014). Bemisia tabaci biotype Q determined for the first time on poinsettia crops in Finland and Sweden. Annales Zoologici Fennici, 51, 501–506.

    Google Scholar 

  • Magan, C., Beroiz, B., Hernandez-Crespo, P., Montes de Oca, M., Carnero, A., Ortego, F., & Castan, P. (2007). Population structure of the banana weevil, an introduced pest in the Canary Islands, studied by RAPD analysis. Bulletin of Entomological Research, 97, 585–590.

    Google Scholar 

  • Mahadevaswamy, H. M., Asokan, R., Hanamant, G., Samuel, D. K., Kumar, R., & Tejaswini, P. (2019a). DNA barcoding and phylogenetic analysis of leafhoppers associated with aster yellow disease on China aster, marigold and chrysanthemum. Mitochondrial DNA Part A. https://doi.org/10.1080/24701394.2020.1735378

  • Mahadevaswamy, H. M., Asokan, R., Kalleshwaraswamy, C. M., & Adarsh, S. K. (2019b). Arecanut white grubs Leucopholis species (Melolonthinae:Scarabaeidae:Coleoptera) morphological, molecular identification and phylogenetic analysis. Journal of Asia-Pacific Entomology, 22, 880–888.

    Google Scholar 

  • Malumphy, C., Walsh, K., Suarez, M. B., Collins, D. W., & Boonham, N. (2009). Morphological and molecular identification of all developmental stages of four whitefly species (Hemiptera: Aleyrodidae) commonly intercepted in quarantine. Zootaxa, 2118(1), 1–29.

    Google Scholar 

  • Manger, A., Behere, G. T., Firake, D. M., Sharma, B., Deshmukh, N. A., Firake, P. D., Azad Thakur, N. S., & Ngachan, S. V. (2018). Genetic characterization of Bactrocera fruit flies (Diptera: Tephritidae) from Northeastern India based on DNA barcodes. Mitochondrial DNA A DNA Mapping Seqencing and Analysis, 29(5), 792–799.

    CAS  Google Scholar 

  • Mani, M., Joshi, S., Kalyanasundaram, M., Shivaraju, C., Krishnamoorthy, A., Asokan, R., & Rebijith, K. B. (2013). A new invasive Jack Beardsley mealybug Pseudococcus jackbeardsleyi Gimpel and Miller on papaya in India. Florida Entomologist, 96, 242–245.

    Google Scholar 

  • Manjunatha, R., Viraktamath, S., & Halikatti, G. (2018). Detection of genetic variation in mango leafhoppers based on mitochondrial marker cytochrome oxidase I (COI) and their phylogenetic relationships of south Indian populations. Journal of Entomology and Zoology Studies, 6(6), 165–171.

    Google Scholar 

  • Mansour, R., Cavalleri, V., Mazzeo, G., Lebdi, K. G., & Russo, A. (2012). A morphological and molecular characterization of vine populations (Hemiptera, Pseudococcidae) from Tunisia. Journal of Entomology Acarology Research, 44(e5), 24–27.

    Google Scholar 

  • Misaka, B. C., Wosula, E. N., Marchelo-d’Ragga, P. W., Hvoslef-Eide, T., & Legg, J. P. (2020). Genetic diversity of Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) colonizing sweet potato and cassava in South Sudan. Journal Reference. Insects, 2020(11), 58. https://doi.org/10.3390/insects11010058

    Article  Google Scholar 

  • Mullis, K. B., & Faloona, F. A. (1987). Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods in Enzymology, 155, 335–335.

    CAS  PubMed  Google Scholar 

  • Murali, S., Jalali, S. K., Shylesha, A. N., Shivalinga Swamy, T. M., Reeta, B., & Prathibha, M. (2017). Molecular characterization and their phylogenetic relationship based on mitochondrial cytochrome oxidase I of brinjal shoot and fruit borer, Leucinodes orbonalis (Guenée) (lepidoptera: Pyralidae). International Journal of Current Microbiology Applied Science, 6(7), 2527–2539.

    Google Scholar 

  • Mutamiswa, R., Machekano, H., & Nyamukondiwa, C. (2017). First report of tomato leaf miner, Tuta absoluta (Meyrick) (lepidoptera: Gelechiidae), in Botswana. Agricultural & Food Security, 6, 49. https://doi.org/10.1186/s40066-017-0128-2

    Article  Google Scholar 

  • Nugnes, F., Russo, E., Viggiani, G., & Bernardo, U. (2018). First record of an invasive fruit fly belonging to Bactrocera dorsalis Complex (Diptera: Tephritidae) in Europe. Insects, 9, 182.

    PubMed  PubMed Central  Google Scholar 

  • Omaththage, P. P., Allen, K. C., Jain, D., Purcell, M., Little, N. S., & Luttrell, R. G. (2015). Rapid identification of Helicoverpa armigera and Helicoverpa zea (lepidoptera: Noctuidae) using ribosomal RNA internal transcribed spacer 1. Journal of Insect Science, 15(1), 155. https://doi.org/10.1093/jisesa/iev137

    Article  CAS  Google Scholar 

  • Omongoa, C. A., Namuddua, A., Okao-Okujaa, G., Alicai, T., Brunschot, S., Ouvrardc, D., & Colvin, J. (2018). Occurrence of Bondar’s nesting whitefly, Paraleyrodes bondari (Hemiptera: Aleyrodidae), on cassava in Uganda Christopher. Revista Brasileira de Entomologia, 62, 257–259.

    Google Scholar 

  • Onah, I. E., Eyo, J. E., & Taylor, D. (2015). Graduate molecular identification of tephritid fruit flies (Diptera: Tephritidae) infesting sweet oranges in Nsukka Agro-ecological zone, Nigeria, based on PCR-RFLP of COI gene and DNA barcoding. African Entomology, 23(2), 342–347.

    Google Scholar 

  • Pacheco da Silva, V. C., Bertin, A., Blin, A., Germain, J. F., Bernardi, D., Rignol, G., Botton, M., & Malausa, T. (2014). Molecular and morphological identification of mealybug species (Hemiptera: Pseudococcidae) in Brazilian vineyards. PLoS One, 9(7), 1–13.

    Google Scholar 

  • Palma-Jiménez, M., & Blanco-Meneses, M. (2017). Morphological and molecular identification of Dysmicoccus brevipes (Hemiptera: Pseudococcidae) in Costa Rica. Journal of Entomology and Zoology Studies, 5(2), 1211–1218.

    Google Scholar 

  • Park, D. S., Leem, Y. J., Hahn, K. W., Suh, S. J., Hong, K. J., & Oh, H. W. (2010). Molecular identification of mealybugs (Hemiptera: Pseudococcidae) found on Korean pears. Journal of Economic Entomology, 103(1), 25–33.

    CAS  PubMed  Google Scholar 

  • Pieterse, W., Muller, D. L., & Van Vuuren, B. J. (2010). A molecular identification approach for five species of mealybug (Hemiptera: Pseudococcidae) on citrus fruit exported from South Africa. African Entomology. Available at https://scholar.sun.ac.za/handle/10019.1/8604

  • Prathapan, K. D., Poorani, J., Amritha, K. S., Anuradha, C., Padmanaban, B., & Thanigairaj, R. (2019). Species composition and diagnoses of leaf- and fruit scarring beetles (coleoptera, Chrysomelidae) infesting bananas and plantains (Zingiberales, Musaceae) in the Indian subcontinent. Deutsche Entomologische Zeitschrift, 66(2), 179–202.

    Google Scholar 

  • Przybylska, A., Fiedler, Å»., & ObrÄ™palska-StÄ™plowska, A. (2016). PCR-RFLP method to distinguish Frankliniella occidentalis, Frankliniella intonsa, Frankliniella pallida and Frankliniella tenuicornis. Journal of Plant Protection Research, 56(1), 60–66.

    CAS  Google Scholar 

  • Rahman, A. K. M. Z., Haque, M. A., Alam, S. N., Yasodha, P., & Balasubramani, V. (2014). Genetic diversity of fruit borer, Helicoverpa armigera (lepidoptera: Noctuidae) based on random amplified polymorphic DNA- polymerase chain reaction. Bangladesh Journal of Agricultural Research, 39(2), 263–271.

    Google Scholar 

  • Rajasri, M., Vijaya Lakshmi, K., & Sujatha, M. (2016). Survey and biotype identification of whitefly, Bemisia tabaci transmitting tomato leaf curl virus in Andhra Pradesh, India. Journal of Agricultural Technology, 12(7.1), 1687–1694.

    Google Scholar 

  • Rashmi, M. A., Verghese, A., Kamala Jayanthi, P. D., Chakravarthy, A. K., Kirubha, A., & Subhash, B. K. (2016). Molecular diversity of oriental fruit fly, Bactrocera dorsalis Hendel (Diptera:Tephritidae) in Karnataka. Pest Management in Horticultural Ecosystems, 22(1), 12–19.

    Google Scholar 

  • Rattanawannee, A., & Chongrattanameteekul, W. (2016). Genetic variation of cassava mealybug, Phenacoccus manihoti (Hemiptera: Pseudococcidae), based on DNA sequences from mitochondrial and nuclear genes. Walailak J Sci & Tech., 13(2), 123–132.

    Google Scholar 

  • Rebijith, K. B., Asokan, R., Krishna, K. N. K., Sreekumar, K. K., Ramamurthy, V. V., & Shivarama Bhat, P. (2012). DNA barcoding and development of species-specific markers for the identification of tea mosquito bugs (Miridae: Heteroptera) in India. Environmental Entomology, 41, 1239–1245.

    CAS  PubMed  Google Scholar 

  • Rebijith, K. B., Asokan, R., Krishna, K. N., & K.. (2011). Development of species- specific markers and molecular differences in mtDNA of Thrips palmi Karny and Scirtothrips dorsalis Hood (Thripidae: Thysanoptera), vectors of tospoviruses (Bunyaviridae) in India. Entomological News, 122, 201–213.

    Google Scholar 

  • Rebijith, K. B., Asokan, R., Krishna, V., Krishna, K. N., & K and Ramamurthy V. V. (2012a). Development of species-specific markers and molecular differences of Aphis gossypii Glover and Myzus persicae (Sulzer), vectors of potyviruses (Potyviridae). Florida Entomologist, 95(3), 674–682.

    CAS  Google Scholar 

  • Rebijith, K. B., Asokan, R., Krishna, V., Ranjitha, H. H., Krishna, K. N. K., & Ramamurthy, V. V. (2014). DNA barcoding and cryptic diversity in thrips (Thysanoptera). Florida Entomologist, 97, 1028–1047.

    Google Scholar 

  • Rohith V. (2018). Development of molecular tests (Diagnostic PCR) for the identification of Lepidopteran Pests in Almonds and Pistachios. Available at https://www.semanticscholar.org/paper/Development-of-Molecular-Tests-(Diagnostic-PCR)-for-Vulchi/1b8afb1d743f861e5079ece99ccaf59a6b698db1.

  • Roopa, H. K., Krishna, K. N. K., Asokan, R., Rebijith, K. B., Mahmood, R., & Verghese, A. (2012). Phylogenetic analysis of Trialeurodes spp. (Hemiptera: Aleyrodidae) from India based on differences in mitochondrial and nuclear DNA. Florida Entomologist, 95, 1086–1094.

    Google Scholar 

  • Roopa, K. H., Asokan, R., Rebijith, K. B., Ranjitha, H. H., Mahmood, R., & Krishna Kumar, N. K. (2015). Prevalence of a new genetic group, MEAM-K of the whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae) in Karnataka, India, as evident from mtCOI sequences. Florida Entomologist, 98(4), 1062–1071.

    Google Scholar 

  • Rugman-Jones, P. F., Morse, J. G., & Stouthamer, R. (2009). Rapid molecular identification of Armored scale insects (Hemiptera: Diaspididae) on Mexican ‘Hass’ avocado. Journal of Economic Entomology, 102(5), 1948–1953.

    PubMed  Google Scholar 

  • Rung, A., Scheffer, S. J., Evans, G., & Miller, D. (2008). Molecular identification of two closely related species of mealybugs of the genus Planococcus (Homoptera: Pseudococcidae). Annals of the Entomological Society of America, 101(3), 525–532.

    CAS  Google Scholar 

  • Sabahi, S., Fekrat, L., & Zakiagh, M. (2017). A simple and rapid molecular method for simultaneous identification of four economically important thrips species. Journal Agricultural Science Techniques, 19(6), 279–1290.

    Google Scholar 

  • Saccaggi, D. L., Kruger, K., & Pietersen, G. (2008). A multiplex PCR assay for the simultaneous identification of three mealybug species (Hemiptera: Pseudococcidae). Bulletin of Entomological Research, 98, 27–33.

    CAS  PubMed  Google Scholar 

  • Sanchez, J. L., & Caoili, B. L. (2016). Identification of Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) biotypes using the molecular marker, cytochrome c oxidase 1 (CO1) gene. AGRIS, 29(1), 136–156.

    Google Scholar 

  • Sandeep, K. S., Sridhar, V., Sharma, A., & Asokan, R. (2017). Report on the occurrence of south American tomato moth, Tuta absoluta (Meyrick) in Punjab, India as evident from trap catches and molecular diagnosis. Pest Management in Horticultural Ecosystems, 23, 85–87.

    Google Scholar 

  • Sarmah, M., & Bandyopadhyay, T. (2009). Colour variation and genetic diversity in tea mosquito bug [Helopeltis theivora (Hemiptera: Miridae)] population from Badlabeta tea estate, upper Assam, India. Journal of Entomology, 6, 155–160.

    CAS  Google Scholar 

  • Savitha, V., Ramamoorthy, D., & Sudhakaran, M. (2019). Mitochondrial cytochrome oxidase (COI) sequence-based identification of pod borer of Thylacoptila sp. AA isolated from Senna alata (L.) Roxb. for the first time in India. Mitochondrial DNA Part A, 30(3), 407–413. https://doi.org/10.1080/24701394.2018.1532415

    Article  CAS  Google Scholar 

  • Serce, C. U., Kaydan, M. B., Kilincer, A. N., & Ertunce, F. (2007). Investigation of mealybug (Hemiptera: Coccoidea: Pseudicoccidae) species from Turkey by RAPD. Phytoparasitica, 35(3), 232–238.

    CAS  Google Scholar 

  • Serrana, J. M., Ishitani, N., Carvajal, T. M., Almarinez, B., Barrion, A. T., Amalin, D. M., & Watanabe, K. (2019). Unravelling the genetic structure of the coconut scale insect Pest (Aspidiotus rigidus Reyne) outbreak populations in the Philippines. Insects, 10(11), 374. https://doi.org/10.3390/insects10110374

    Article  PubMed  PubMed Central  Google Scholar 

  • Sethusa, M. T., Millar, I. M., Yessoufou, K., Jacobs, A., van der Bank, M., & van der Bank, H. (2014). DNA barcode efficacy for the identification of economically important scale insects (Hemiptera: Coccoidea) in South Africa. African Entomology, 22(2), 257–266.

    Google Scholar 

  • Shashank, P. R., Kammar, V., Mally, R., & Chakravarthy, A. K. (2018). A new Indian species of shoot and capsule borer of the genus Conogethes (lepidoptera: Crambidae), feeding on cardamom. Zootaxa, 4374, 2. Available at https://www.mapress.com/j/zt/article/view/zootaxa.4374.2.3

    Google Scholar 

  • Shashank, P. R., Ojha, R., Venkatesan, T., Jalali, S. K., & Bhanu, K. R. M. (2015). Molecular characterization of brinjal shoot and fruit borer, Leucinodes orbonalis (Guenée) (lepidoptera: Crambidae) based on mitochondrial marker cytochrome oxidase I and their phylogenetic relationship. Indian Journal of Experimental Biology, 52, 51–55.

    Google Scholar 

  • Singh, M. P. (2017). Morphological identification of cucurbitaceous fruit flies in Bihar and genetic diversity of Bactrocera cucurbitae. M.Sc.(Ag) thesis, Bihar Agricultural University, Sabour, 70p.

    Google Scholar 

  • Sjölund M J, Ouvrard D, Kenyon D and Highet F. 2016. Developing AN RT-PCR assay for the identification of psyllid species. Proceedings Crop Protection in Northern Britain 2016. Available at https://www.researchgate.net/publication/303881533.

  • Subramanian, S., & Mohankumar, S. (2006). Genetic variability of the bollworm, Helicoverpa armigera, occurring on different host plants. Journal of Insect Science, 6, 26–34.

    PubMed  PubMed Central  Google Scholar 

  • Suganthi, M., Chandrashekara, K. N., Arvinth, S., & Raj, K. R. (2016). Molecular characterization of tea mosquito bug from tea growing regions of India. Mitochondrial DNA Part A, 27(5), 3504–3506.

    CAS  Google Scholar 

  • Suganthy, M., Rageshwari, S., Senthilraja, C., Nakkeeran, S., Malathi, V. G., Ramaraju, K., & P. Renukadevi K. (2017). New record of Western flower thrips, Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae) in South India. International Journal of Environment, Agriculture and Biotechnology, 1(4), 857–867.

    Google Scholar 

  • Sukirno, S., Muhammad, T., Rasool, K. G., & Abdulrahman, S. A. (2018). Undescribed color polymorphism of the Asiatic palm weevil, Rhynchophorus vulneratus panzer (coleoptera: Curculionidae) in Indonesia: Biodiversity study based on COI gene. Florida entomologist, 101(4), 642–648.

    Google Scholar 

  • Sunnucks, P., & Hales, D. F. (1996). Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae). Molecular Biology and Evolution, 13, 510–524.

    CAS  PubMed  Google Scholar 

  • Timm A.E., Stiller M. and Frey J.E. 2008.A Molecular identification key for economically important thrips species (Thysanoptera: THRIPIDAE) in Southern Africa. African Entomology 16(1):68–75.

    Google Scholar 

  • Tóbiás, I., Kozár, F., & Kaydan, M. B. (2012). Molecular diagnosis of two closely related mealybug species (Hemiptera: Pseudococcidae). Acta Phytopathologica et Entomologica Hungarica, 47(1), 51–54.

    Google Scholar 

  • Topakci, N., Yükselbaba, U., & Gocmen, H. (2017). Detection and identification of citrus long-horned beetle, Anoplophora chinensis (Forster, 1771) (coleoptera: Cerambycidae) a new pest in Antalya Province, Turkey by sequencing of mtCOI region1. Türkish Journal of Entomology, 41(3), 325–331.

    Google Scholar 

  • Tyagi, K., Kumar, V., Singha, D., & Chakraborty, R. (2015). Morphological and DNA barcoding evidence for invasive pest thrips, Thrips parvispinus (Thripidae: Thysanoptera), newly recorded from India. Journal of Insect Science, 15(1), 1–4.

    Google Scholar 

  • Tyagi, K., Kumar, V., Singha, S. D., Chandra, K., Amin, L. B., Shantanu, K., Rajasree, C., & Sumantika, C. (2017). DNA barcoding studies on thrips in India: Cryptic species and species complexes. Scientific Reports, 7, 4898. https://doi.org/10.1038/s41598-017-05112-7

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ueda, S., & Brown, J. K. (2006). First report of the Q biotype of Bemisia tabaci in Japan by mitochondrial cytochrome oxidase I sequence analysis. Phytoparasitica, 34, 405–411.

    CAS  Google Scholar 

  • Ukey, N., Chandele, A., Khandare, S., & Chimote, V. (2017). Molecular identification of fruit flies, Bactrocera spp. (Diptera: Tephritidae) infesting guava fruits by using mitochondrial COI gene. Journal of Entomology and Zoology Studies, 5(2), 1503–1507.

    Google Scholar 

  • Valenzuela, I., Hoffmann, A. H., Malipatil, M. B. R., Peter, M. R., & Weeks, A. R. (2007). Identification of aphid species (Hemiptera: Aphididae: Aphidinae) using a rapid polymerase chain reaction restriction fragment length polymorphism method based on the cytochrome oxidase subunit I gene. AGRIS, 46(4), 305–312.

    Google Scholar 

  • Vikas, J., Geetika, B., & Singh, M. (2016). Molecular identification of mango hoppers infesting mango trees in Punjab through DNA barcoding. Indian Journal of Horticulture, 73(2), 192–196.

    Google Scholar 

  • Wang, X. B., Zhang, J. T., Deng, J., Zhou, Q. S., Zhan, Y. Z., & Wu, S. A. (2016). DNA barcoding of mealybugs (Hemiptera: Coccoidea: Pseudococcidae) from mainland China. Annals of the Entomological Society of America, 109(3), 438–446.

    Google Scholar 

  • Watanabe, S., & Melzer, M. J. (2017). A multiplex PCR assay for differentiating coconut rhinoceros beetle (coleoptera: Scarabaeidae) from oriental flower beetle (coleoptera: Scarabaeidae) in early life stages and excrement. Journal of Economic Entomology, 110(2), 678–682.

    CAS  PubMed  Google Scholar 

  • Wu, F., Liu, Z., Shen, H., Fei, Y. U., Jun Ma, H. X., & Zeng, L. (2014). Morphological and molecular identification of Paracoccus marginatus (Hemiptera: Pseudococcidae) in Yunnan, China. Florida Entomologist, 97(4), 1469–1473.

    Google Scholar 

  • Zhang, D. X., & Hewitt, G. D. (1996). Nuclear integrations: Challenges for mitochondrial DNA markers. Trees, 11, 247–251.

    CAS  Google Scholar 

  • Zhong-Yi, C., Qiong, Z., Peng, L. Y., Pin-Fa, S. I., & Yang, W. (2020). Molecular identification of citrus fruit flies and genetic diversity analysis of Bactrocera minax (Diptera: Tephritidae) populations in China based on mtDNA COI gene sequences. Acta Entomologica Sinica, 63(1), 85–96.

    Google Scholar 

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Mani, M., Venkatesan, T., Chethan, B.R. (2022). Molecular Identification of Insect Pests of Horticultural Crops. In: Mani, M. (eds) Trends in Horticultural Entomology . Springer, Singapore. https://doi.org/10.1007/978-981-19-0343-4_1

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