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Exploring Similarity Between Embedding Dimension of Time-Series Data and Flows of an Ecological Population Model

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Methods of Mathematical Oncology (MMDS 2020)

Abstract

Cancer cells interact with tissue cells in a complex manner. Immune cells had that initially participated in eliminating cancer cells are often educated to become assisting cancer growth. Identifying causal relationship of cellular interactions that mediate cancer progression is crucial to understand how cancer cells grow, evolve, and persist. A mathematical model that describes dynamics of cancer cell population is constructed based on a given causal relationship among model ingredients. Mathematical modeling has been employed to explain cancer progression patterns in terms of dynamical system.

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References

  1. Mougi, A. (ed.): Diversity of Functional Traits and Interactions: Perspectives on Community Dynamics. Springer, Singapore (2020)

    Google Scholar 

  2. Takens, F.: Detecting strange attractors in turbulence. In: Rand, D., Young, L.-S. (eds.) Dynamical Systems and Turbulence, Warwick 1980. LNM, vol. 898, pp. 366–381. Springer, Heidelberg (1981). https://doi.org/10.1007/BFb0091924

  3. McCann, K.S., Gellner, G. (eds.): Theoretical Ecology: Concepts and Applications. Oxford University Press, Oxford (2020)

    Google Scholar 

  4. Deyle, E.R., Sugihara, G.: Generalized theorems for nonlinear state space reconstruction. PLoS One 6(3), e18295 (2011)

    Article  Google Scholar 

  5. Chang, C.-W., Ushio, M., Hsieh, C.: Empirical dynamic modeling for beginners. Ecol. Res. 32(6), 785–796 (2017). https://doi.org/10.1007/s11284-017-1469-9

    Article  Google Scholar 

  6. Sugihara, G., et al.: Detecting causality in complex ecosystems. Science 338(6106), 496–500 (2012)

    Article  Google Scholar 

  7. Ushio, M., et al.: Fluctuating interaction network and time-varying stability of a natural fish community. Nature 554, 360–363 (2018)

    Article  Google Scholar 

  8. Sugihara, G., May, R.M.: Nonlinear forecasting as a way of distinguishing chaos from measurement error in time series. Nature 344(6268), 734–741 (1990)

    Article  Google Scholar 

  9. Hsieh, C.-H., Glaser, S.M., Lucas, A.J., Sugihara, G.: Distinguishing random environmental fluctuations from ecological catastrophes for the north pacific ocean. Nature 435(7040), 336–340 (2005)

    Article  Google Scholar 

  10. Gajera, V., Shubham, Gupta, R., Jana, P.K.: An effective Multi-Objective task scheduling algorithm using Min-Max normalization in cloud computing. In: 2016 2nd International Conference on Applied and Theoretical Computing and Communication Technology (iCATccT), pp. 812–816, July 2016

    Google Scholar 

  11. Rockne, R.C., et al.: The 2019 mathematical oncology roadmap. Phys. Biol. 16(4), 041005 (2019)

    Article  Google Scholar 

  12. de Koning, H.J., et al.: Benefits and harms of computed tomography lung cancer screening strategies: a comparative modeling study for the U.S. preventive services task force. Ann. Int. Med. 160(5), 311–320 (2014)

    Article  Google Scholar 

  13. Curtius, K., Hazelton, W.D., Jeon, J., Georg Luebeck, E.: A multiscale model evaluates screening for neoplasia in Barrett’s esophagus. PLoS Comput. Biol. 11(5), e1004272 (2015)

    Google Scholar 

  14. Hori, S.S., Lutz, A.M., Paulmurugan, R., Gambhir, S.S.: A model-based personalized cancer screening strategy for detecting early-stage tumors using blood-borne biomarkers. Cancer Res. 77(10), 2570–2584 (2017)

    Article  Google Scholar 

  15. Hanin, L., Pavlova, L.: Optimal screening schedules for prevention of metastatic cancer. Stat. Med. 32(2), 206–219 (2013)

    Article  MathSciNet  Google Scholar 

  16. Ryser, M.D., Worni, M., Turner, E.L., Marks, J.R., Durrett, R., Shelley Hwang, E.: Outcomes of active surveillance for ductal carcinoma in situ: a computational risk analysis. J. Natl. Cancer Inst. 108(5) (2016)

    Google Scholar 

  17. Tani, N., et al.: Small temperature variations are a key regulator of reproductive growth and assimilate storage in oil palm (Elaeis guineensis). Sci. Rep. 10(1), 650 (2020)

    Article  Google Scholar 

  18. Haaga, K.A., Brendryen, J., Diego, D., Hannisdal, B.: Forcing of late Pleistocene ice volume by spatially variable summer energy. Sci. Rep. 8(1), 11520 (2018)

    Article  Google Scholar 

  19. Luo, L., Cheng, F., Qiu, T., Zhao, J.: Refined convergent cross-mapping for disturbance propagation analysis of chemical processes. Comput. Chem. Eng. 106, 1–16 (2017)

    Article  Google Scholar 

  20. Wismüller, A., Wang, X., DSouza, A.M., Nagarajan, M.B.: A framework for exploring Non-Linear functional connectivity and causality in the human brain: mutual connectivity analysis (MCA) of Resting-State functional MRI with convergent Cross-Mapping and Non-Metric clustering, July 2014

    Google Scholar 

  21. Tajima, S., Yanagawa, T., Fujii, N., Toyoizumi, T.: Untangling brain-wide dynamics in consciousness by cross-embedding. PLoS Comput. Biol. 11, e1004537 (2015)

    Article  Google Scholar 

  22. Tajima, S., Mita, T., Bakkum, D.J., Takahashi, H., Toyoizumi, T.: Locally embedded presages of global network bursts. PNAS 114, 9517–9522 (2017)

    Article  Google Scholar 

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Acknowledgements

This work is supported by JST-Mirai Program Grant Number JPMJMI19B1, the Japan Society for the Promotion of Science (JSPS) Grant-in-Aid (S) 15H0570710 and (B) 18H0266210, and the Ministry of education, culture sports, science and technology-Japan (MEXT) Ambitious Tenure Track program in life science, Hokkaido University.

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Correspondence to Shinji Nakaoka .

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Kumakura, D., Nakaoka, S. (2021). Exploring Similarity Between Embedding Dimension of Time-Series Data and Flows of an Ecological Population Model. In: Suzuki, T., Poignard, C., Chaplain, M., Quaranta, V. (eds) Methods of Mathematical Oncology. MMDS 2020. Springer Proceedings in Mathematics & Statistics, vol 370. Springer, Singapore. https://doi.org/10.1007/978-981-16-4866-3_4

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