Abstract
This chapter describes a variety of ways for detecting and evaluating biofilms. The biological methods include staining, gene analysis, and proteomics. An instrumental analysis section is available too. It introduces many microscopes and discusses their uses for observing and analyzing biofilms.
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References
Lee, G. M., & Bishop, P. (2013). Microbiology and infection control for health professionals (5th ed.). Melbourne, Australia: Pearson Australia.
Kanematsu, H., Sasaki, S., Miura, Y., Kogo, T., Sano, K., Wada, N., et al. (2015). Composite coating to control biofilm formation and effect of alternate electro-magnetic field. Materials Technology, 30, 21–26. https://doi.org/10.1179/1753555714y.0000000223.
Kanematsu, H., Ikigai, H., & Yoshitake, M. (2009). Evaluation of various metallic coatings on steel to mitigate biofilm formation. International Journal of Molecular Science, 10, 559–571. https://doi.org/10.3390/ijms10020559.
Ogawa A., Kiyohara, T., Kobayashi, Y.-h., Sano, K., & Kanematsu, H. (2017). Nickel, molybdenum, and tungsten nanoparticle-dispersed alkylalkoxysilane polymer for biomaterial coating: evaluation of effects on bacterial biofilm formation and biosafety. Biomedical Research and Clinical Practice, 2, 1–7. https://doi.org/10.15761/brcp.1000138.
Xu, Z., Liang, Y., Lin, S., Chen, D., Li, B., Li, L., & Deng, Y. J. C. m. (2016). Crystal violet and XTT assays on Staphylococcus aureus biofilm quantification 73, 474–482.
Qayyum, S., Oves, M., & Khan, A. U. (2017). Obliteration of bacterial growth and biofilm through ROS generation by facilely synthesized green silver nanoparticles. PLoS ONE, 12, 1–18. https://doi.org/10.1371/journal.pone.0181363.
Iqbal, M. J., Ali, S., Rashid, U., Kamran, M., Malik, M. F., Sughra, K., Zeeshan, N., Afroz, A., Saleem, J., & Saghir, M. (2018). Biosynthesis of silver nanoparticles from leaf extract of Litchi chinensis and its dynamic biological impact on microbial cells and human cancer cell lines. Cell Mol Biol (Noisy-le-grand), 64, 42–47.
Lau, Y. Y., How, K. Y., Yin, W. F., & Chan, K. G. (2018). Cloning and characterization of short-chain N-acyl homoserine lactone-producing Enterobacter asburiae strain L1 from lettuce leaves. Microbiologyopen, 7, e00610. https://doi.org/10.1002/mbo3.610.
Lin, N. J., Keeler, C., Kraigsley, A. M., Ye, J., & Lin-Gibson, S. (2018). Effect of dental monomers and initiators on Streptococcus mutans oral biofilms. Dental Materials. https://doi.org/10.1016/j.dental.2018.02.003.
Kanematsu, H. (2017). A new international standard for testing antibacterial effects. Advanced Materials & Processing, 175, 26–29.
Coughlin, M., Kinkle, B., Tepper, A., & Bishop, P. (1997). Characterization of aerobic azo dye-degrading bacteria and their activity in biofilms. Water Science and Technology, 36, 215–220.
Awad, H., & Galwa, N. A. (2005). Electrochemical degradation of acid blue and basic brown dyes on Pb/PbO2 electrode in the presence of different conductive electrolyte and effect of various operating factors. Chemosphere, 61, 1327–1335.
Haldar, S., Paul, P., & Bhattacharya, A. (2010). Polysulfone-azo composite membrane: New preparative approach, importance in bactericidal and biofilm inhibition activities. Journal of Applied Polymer Science, 115, 3710–3715.
Chengalroyen, M., & Dabbs, E. (2013). The microbial degradation of azo dyes: Minireview. World Journal of Microbiology & Biotechnology, 29, 389–399.
Mawad, A., Yousef, N., & Shoreit, A. (2015). Application of fungal biofilm supported on activated carbon for adsorption of two azo dyes: Adsorption kinetics and isotherms. Advances in Bioscience and Bioengineering, 3, 11–19. https://doi.org/10.11648/j.abb.20150302.11.
Trasad, V. A, & Bhat, P. R. (2015). Effect of various plaque disclosing agents on color stability of esthetic restorative materials an invitro study. Indian Journal of Dental Sciences, 7, 36–39.
Manion M. K., Peppou, G. C. (2017). Empire technology development LLC, Color change indicator of biofilm formation. U.S. Patent 9,535,043.
Ala’Aldeen, D., Mahdavi, J., & Soultanas, P. (2018). Biofilm inhibiting compositions enhancing weight gain in livestock. U.S. Patent Application, Biomedical Inc, 10/106,567.
Andjouh, S., Perrin, F. X., & Blache, Y. G. (2018). Bis-Triazole Compounds with Anti-Biofilm and Anti-Corrosion Properties. U.S. Patent Application, Universite de Toulon, 16/061,767.
Chamberlain, A. H. L., Angell, P., & Campbell, H. S. (1988). Staining procedures for characterising biofilms in corrosion investigations. British Corrosion Journal, 23(3), 197–198.
Allison, D. G., Ruiz, B., SanJose, C., Jaspe, A., & Gilbert, P. (1998). Extracellular products as mediators of the formation and detachment of Pseudomonas fluorescens biofilms. FEMS Microbiology Letters, 167(2), 179–184.
Gao, L., Giglio, K. M., Nelson, J. L., Sondermann, H., & Travis, A. J. (2014). Ferromagnetic nanoparticles with peroxidase-like activity enhance the cleavage of biological macromolecules for biofilm elimination. Nanoscale, 6(5), 2588–2593.
De Beer, D., Stoodley, P., Roe, F., & Lewandowski, Z. (1994). Effects of biofilm structures on oxygen distribution and mass transport. Biotechnology and Bioengineering, 43, 1131–1138.
Fassel, T. A., & Edmiston, C. E. Jr. (1999). Bacterial biofilms: Strategies for preparing glycocalyx for electron microscopy. In Methods in enzymology (Vol. 310, pp. 194–203, 0076-6879). Elsevier.
Rayner, J., Veeh, R., & Flood, J. (2004). Prevalence of microbial biofilms on selected fresh produce and household surfaces. International Journal of Food Microbiology, 95, 29–39.
Berman, T., & Holenberg, M. (2005). Don’t fall foul of biofilm through high TEP levels. Filtration & Separation, 42, 30–32.
Pelkonen, S., Häyrinen, J., & Finne, J. (1988). Polyacrylamide gel electrophoresis of the capsular polysaccharides of Escherichia coli K1 and other bacteria. Journal of Bacteriology, 170, 2646–2653.
Ellison, R. r., Giehl, T. J., & LaForce, F. M. (1988). Damage of the outer membrane of enteric gram-negative bacteria by lactoferrin and transferrin. Infection and Immunity, 56, 2774–2781.
Eugene, C. Y., & Hackett, M. (2000). Rapid isolation method for lipopolysaccharide and lipid A from gram-negative bacteria. Analyst, 125, 651–656.
Jiang, H., & Bishop, P. (1994). Aerobic biodegradation of azo dyes in biofilms. Water Science and Technology, 29, 525.
Pinheiro, H. M., Touraud, E., & Thomas, O. (2004). Aromatic amines from azo dye reduction: status review with emphasis on direct UV spectrophotometric detection in textile industry wastewaters. Dyes and Pigments, 61, 121–139.
Van der Zee, F. P., & Villaverde, S. (2005). Combined anaerobic–aerobic treatment of azo dyes—A short review of bioreactor studies. Water Research, 39, 1425–1440.
Serralta, V. W., Harrison-Balestra, C., Cazzaniga, A. L., Davis, S. C., & Mertz, P. M. (2001). Lifestyles of bacteria in wounds: Presence of biofilms? Wounds, 13, 29–34.
Harrison-Balestra, C., Cazzaniga, A. L., Davis, S. C., & Mertz, P. M. (2003). A wound-isolated Pseudomonas aeruginosa grows a biofilm in vitro within 10 hours and is visualized by light microscopy. Dermatologic Surgery, 29, 631–635.
Kalishwaralal, K., BarathManiKanth, S., Pandian, S. R. K., Deepak, V., & Gurunathan, S. (2010). Silver nanoparticles impede the biofilm formation by Pseudomonas aeruginosa and Staphylococcus epidermidis. Colloids and Surfaces B: Biointerfaces, 79, 340–344.
Hassan, A., Usman, J., Kaleem, F., Omair, M., Khalid, A., & Iqbal, M. (2011). Evaluation of different detection methods of biofilm formation in the clinical isolates. The Brazilian Journal of Infectious Diseases, 15, 305–311.
Flemming, H.-C., & Wingender, J. (2010). The biofilm matrix. Nature Reviews Microbiology, 8, 623.
Boles, B. R., Thoendel, M., Roth, A. J., & Horswill, A. R. (2010). Identification of genes involved in polysaccharide-independent Staphylococcus aureus biofilm formation. PLoS ONE, 5, e10146.
Brown, A., Horobin, A., Blount, D., Hill, P., English, J., Rich, A., et al. (2012). Blow fly Lucilia sericata nuclease digests DNA associated with wound slough/eschar and with Pseudomonas aeruginosa biofilm. Medical and Veterinary Entomology, 26, 432–439.
Ryu, B. H. (2004). Semicontinuous decolorization of azo dyes by rotating disc contactor immobilized with Aspergillus sojae B-10. Biotechnology and Bioprocess Engineering, 9, 309–312.
Mandal, S. M. (2012). A novel hydroxyproline rich glycopeptide from pericarp of Datura stramonium: proficiently eradicate the biofilm of antifungals resistant Candida albicans. Peptide Science, 98, 332–337.
Pan, H., Xu, J., Kweon, O.-G., Zou, W., Feng, J., He, G.-X., et al. (2015). Differential gene expression in Staphylococcus aureus exposed to Orange II and Sudan III azo dyes. Journal of Industrial Microbiology and Biotechnology, 42, 745–757.
Stewart, P. S., Peyton, B. M., Drury, W. J., & Murga, R. (1993). Quantitative observations of heterogeneities in Pseudomonas aeruginosa biofilms. Applied and Environment Microbiology, 59, 327–329.
Hendricks, S. K., Kwok, C., Shen, M., Horbett, T. A., Ratner, B. D., & Bryers, J. D. (2000). Plasma-deposited membranes for controlled release of antibiotic to prevent bacterial adhesion and biofilm formation. Journal of Biomedical Materials Research: An Official Journal of The Society for Biomaterials, The Japanese Society for Biomaterials, and The Australian Society for Biomaterials and the Korean Society for Biomaterials, 50, 160–170.
Sanders, S. Q., Frank, J. F., & Arnold, J. W. (2008). Temperature and nutrient effects on Campylobacter jejuni attachment on multispecies biofilms on stainless steel. Journal of Food Protection, 71, 271–278.
Hochstim, C. J., Choi, J. Y., Lowe, D., Masood, R., & Rice, D. H. (2010). Biofilm detection with hematoxylin-eosin staining. Archives of Otolaryngology-Head & Neck Surgery, 136, 453–456.
Freire, F., Costa, A. C. B. P., Pereira, C. A., & Junior, M. B. (2014). Comparison of the effect of rose bengal- and eosin Y-medited photodynamic inactivation on planktonic cells and biofilms of Candida albicans. Lasers in Medical Science, 29, 949–955. https://doi.org/10.1007/s10103-013-1435-x.
Marinic, K., Manoil, D., Filieri, A., Wataha, J. C., Schrenzel, J., Lange, N., & Bouillaguet, S. (2015). Repeated exposures to blue light-activated eosin Y enhance inactivation of E.faecalis biofilms, in vitro. Photodiagnosis and Photodynamic Therapy, 12, 393–400. https://doi.org/10.1016/j.pdpdt.2015.06.004.
Muyzer, G., De Waal, E. C., & Uitterlinden, A. G. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environment Microbiology, 59, 695–700.
O’toole, G. A., & Kolter, R. (1998). Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis. Molecular Microbiology, 28, 449–461.
Pratt, L. A., & Kolter, R. (1998). Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili. Molecular Microbiology, 30, 285–293.
O’Toole, G. A., Pratt, L. A., Watnick, P. I., Newman, D. K., Weaver, V. B., & Kolter, R. (1999). Genetic approaches to study of biofilms. In Methods in enzymology (Vol. 310, pp. 91–109, 0076-6879). Elsevier.
Pratt, L. A., & Kolter, R. (1999). Genetic analyses of bacterial biofilm formation. Current Opinion in Microbiology, 2, 598–603.
Watnick, P., & Kolter, R. (2000). Biofilm, city of microbes. Journal of Bacteriology, 182, 2675–2679.
Solano, C., GarcÃa, B., Valle, J., Berasain, C., Ghigo, J. M., Gamazo, C., et al. (2002). Genetic analysis of Salmonella enteritidis biofilm formation: Critical role of cellulose. Molecular Microbiology, 43, 793–808.
Mah, T.-F., Pitts, B., Pellock, B., Walker, G. C., Stewart, P. S., & O’toole, G. A. (2003). A genetic basis for Pseudomonas aeruginosa biofilm antibiotic resistance. Nature, 426, 306.
Zhang, Y. Q., Ren, S. X., Li, H. L., Wang, Y. X., Fu, G., Yang, J., et al. (2003). Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Molecular Microbiology, 49, 1577–1593.
Branda, S. S., Vik, Å., Friedman, L., & Kolter, R. (2005). Biofilms: The matrix revisited. Trends in Microbiology, 13, 20–26.
Maseda, H., Ikigai, H., Kuroda, D., Ogawa, A., & Kanematsu, H. (2010). Immersion of iron and steel materials into marine environment at Ise Gulf and gene analysis of attached microorganism. CAMP-ISIJ, 23, 668–669.
Ogawa, A., Noda, M., Kanematsu, H., & Sano, K. (2015). Application of bacterial 16S rRNA gene analysis to a comparison of the degree of biofilm formation on the surface of metal coated glasses. Materials Technology, 30, 61–65.
Ogawa, A., et al. (2016). Effect of silver or copper nanoparticles-dispersed silane coatings on biofilm formation in cooling water systems. Materials (Basel), 9, 632–651.
Ogawa, A., Takakura, K., Sano, K., Kanematsu, H., Yamano, T., Saishin, T., & Terada, S. (2018). Microbiome analysis of biofilms of silver nanoparticle-dispersed silane-based coated carbon steel using a next-generation sequencing technique. Antibiotics, 7, 91. https://doi.org/10.3390/antibiotics7040091.
Aebersold, R., & Mann, M. (2003). Mass spectrometry-based proteomics. Nature, 422(6928), 198.
Hanash, S. (2003). Disease proteomics. Nature, 422(6928), 226.
Pandey, A., & Mann, M. (2000). Proteomics to study genes and genomes. Nature, 405(6788), 837.
Percival, S. L., Malic, S., Cruz, H., & Williams, D. W. (2011). Introduction to biofilms. In S. L. Percival (Ed.), Biofilms and veterinary medicine (pp. 41–68). Berlin Heidelberg: Springer.
Lewandowski, Z., & Beyenal, H. (2014). Fundamentals of biofilm research (2nd ed., pp. 642, 978-1-4665-5959-2). Boca Raton, London, New York: CRC Press.
Flemming, H. C. (2016). EPS-then and now. Microorganisms, 4. https://doi.org/10.3390/microorganisms4040041.
Mehta, D. K., & Das, R. (2018). Microbial biofilm and quorum sensing inhibition: Endowment of medicinal plants to combat multidrug- resistant bacteria. Current Drug Targets. https://doi.org/10.2174/1389450119666180406111143.
Moriarty, T. F., Zaat, S. A. J., & Busscher, H. J. (2013). Biomaterials associated infection. New York: Springer. 978-1-4614-1030-0978-1-4614-1031-7 (eBook).
Larkin, P. (2011). Infrared and Raman spectroscopy: Principles and spectral interpretation (1st ed., pp. 230, 978-0123869845). Waltham, MA: Elsevier.
Dass, C. (2007). Fundamentals of contemporary mass spectrometry (Vol. 16). Wiley.
Cole, R. B. (ed.). (2011). Electrospray and MALDI mass spectrometry: Fundamentals, instrumentation, practicalities, and biological applications. Wiley.
Kleinberg, R. L., & Jackson, J. A. (2001). An introduction to the history of NMR well logging. Concepts in Magnetic Resonance, 13(6), 340–342.
Preston, C. M. (1996). Applications of NMR to soil organic matter analysis: History and prospects. Soil Science, 161(3), 144–166.
Lewandowski, Z., Altobelli, S. A., & Fukushima, E. (1993). NMR and microelectrode studies of hydrodynamics and kinetics in biofilms. Biotechnology Progress, 9(1), 40–45.
Hoskins, B. C., Fevang, L., Majors, P. D., Sharma, M. M., & Georgiou, G. (1999). Selective imaging of biofilms in porous media by NMR relaxation. Journal of Magnetic Resonance, 139(1), 67–73.
Majors, P. D., McLean, J. S., Pinchuk, G. E., Fredrickson, J. K., Gorby, Y. A., Minard, K. R., et al. (2005). NMR methods for in situ biofilm metabolism studies. Journal of Microbiological Methods, 62(3), 337–344.
Lewandowski, Z., & Beyenal, H. (2013). Fundamentals of biofilm research (1466559608). CRC Press.
Vikramaditya, B., & Nelson, B. J. (1997). Visually guided microassembly using optical microscopes and active vision techniques. In Proceedings of the 1997 IEEE International Conference on Robotics and Automation (pp. 3172–3177). New Mexico: Albuquerque.
Levoy, M., Ng, R., Adams, A., Footer, M., & Horowitz, M. (2006). Light field microscopy. ACM Transactions on Graphics (TOG), 25, 924–934.
Nagahara, H., Kuthirummal, S., Zhou, C., & Nayar, S. K. (2011). Flexible depth of field photography. IEEE Transactions on Pattern Analysis and Machine Intelligence, 33(1).
Noguchi, M., & Nayar, S. K. (1994, October). Microscopic shape from focus using active illumination. In Proceedings of 12th International Conference on Pattern Recognitio (Vol. 1, pp. 147–152). IEEE.
Hermanson, G. T. (2013). Bioconjugate techniques (3rd ed.).
Goding, J. W. (1996). Immunofluorescence. In: Monoclonal antibodies (3rd ed., pp. 352–399).
File: Bloodcell sun flares pathology.jpeg. Date: October 27, 2005. This work is in the public domain. https://commons.wikimedia.org/wiki/File:Bloodcell_sun_flares_pathology.jpeg.
Morrison, L. E., Ramakrishnan, R., & Wilber, K. (2002). Labeling fluorescence in situ hybridization probes for genomic targets. In Methods in molecular biology. https://doi.org/10.1385/1-59259-300-3:41.
Crivat, G., & Taraska, J. (2012, January 1). Imaging proteins inside cells with fluorescent tags. Trends in Biotechnology, 30(1), 8–16.
Vindin, H. File: STD Depth Coded Stack Slices through Cells.png. Date: June 30, 2014. License: Creative Commons Attribution-Share Alike, 4.0 International https://commons.wikimedia.org/wiki/File:STD_Depth_Coded_Stack_Slices_through_Cells.png.
Pawley, J. B. (Ed.). (2006). Handbook of biological confocal microscopy (3rd ed.). Berlin: Springer.
Kamjunke, Norbert, Spohn, Uwe, Futing, Manfred, Wagner, Georg, Scharf, Eva-Maria, Sandrock, Stefan, et al. (2012). Use of confocal laser scanning microscopy for biofilm investigation on paints under field conditions. International Biodeterioration & Biodegradation, 69, 17–22. https://doi.org/10.1016/j.ibiod.2011.11.015.
Cerca, N., Gomes, F., Pereira, S., Teixeira, P., & Oliveira, R. (2012). Confocal laser scanning microscopy analysis of S. epidermidis biofilms exposed to farnesol, vancomycin, and rifampicin. BMC Research Notes, 5, 244. https://doi.org/10.1186/1756-0500-5-244.
Hall-Stoodley, L., & Stoodley, P. (2009, June 1). Evolving concepts in biofilm infections. Cellular Microbiology,11(7). https://doi.org/10.1111/j.1462-5822.2009.01323.x.
Peters, G., Locci, R., & Pulverer, G. (1982). Adherence and growth of coagulase- negative staphylococci on surfaces of intravenous catheters. Journal of Infectious Diseases, 146(4), 479–482.
Kouider, N., Hamadi, F., Mallouki, B., Bengoram, J., Mabrouki, M., Zekraoui, M., et al. (2010). Effect of stainless steel surface roughness on Staphylococcus aureus adhesion. International Journal of Pure and Applied Science, 4(1), 17.
File: Misc pollen. jpg. Date: December 9, 2004. This work is in the public domain. https://commons.wikimedia.org/wiki/File:Misc_pollen.jpg.
Modgi, S., McQuaid, M. E., & Englezos, P. (2006). SEM/EDX analysis of Z-direction distribution of mineral content in paper along the cross direction. Pulp and Paper Canada, 48–51. https://www.pulpandpapercanada.com/paptac/PDFs/May06/paperanalysis.pdf.
Stokes, D. J. (2001). Characterization of soft condensed matter and delicate materials using environmental scanning electron microscopy (ESEM). Advanced Engineering Materials, 3(3), 126–130.
Ricce. File: Simens numeri.jpg. Date: August 19, 2008. This work is in the public domain. https://commons.wikimedia.org/wiki/File:Simens_numeri.jpg.
Murphy, F., & Whitfield, S. File: Polio EM PHIL 1875 lores.png. Date: May 27, 2006. The image (a work of the U.S. federal government) is in the public domain. https://commons.wikimedia.org/wiki/File:Polio_EM_PHIL_1875_lores.PNG.
Williams, R. C., & Wyckoff, R. W. G. (1946). Applications of metallic shadow—Castings to microscopy. Journal of Applied Physics, 17(23). https://doi.org/10.1063/1.1707630.
Ayache, J., Beaunier, L., Boumendil, J., Ehret, G., & Laub, D. (2013, June 17). A guide to sample preparation methods for TEM in materials science and biology, (magazine). Microscopy and Analysis. https://microscopy-analysis.com/magazine/issues/guide-sample-preparation-methods-tem-materials-science-and-biology.
Hunter, Ryan C., & Beveridge, Terry J. (2005). High–resolution visualization of Pseudomonas aeruginosa PAO1 biofilms by freeze-substitution transmission electron microscopy. Journal of Bacteriology, 187(22), 7619–7630. https://doi.org/10.1128/JB.187.22.7619-7630.2005.
Cheng, Y., Grigorieff, N., Penczek, P., & Waltz, T. (2015). A primer to single- particle cryo-electron microscopy. Cell, 161(3), 438–449. https://doi.org/10.1016/j.cell.2015.03.050.
Cressey, D., & Callaway, E. (2017, October). Cryo-electron microscopy wins chemistry Nobel. Nature, 550(7675). https://doi.org/10.1038/nature.2017.22738.
Brettjbaker. File: 25KpA9Def4secArman4Box1.png. Date: July 6, 2013. This work is in the public domain. https://commons.wikimedia.org/wiki/File:25K15pA9Def4sec_Arman_4_Box1.png.
Comolli, Luis R., Baker, Brett J., Downing, Kenneth H., Siegerist, Christina E., & Banfield, Jillian F. (2009). Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon. The ISME Journal, 3, 159–167.
Press Release (1986, October 15). The royal Swedish academy of sciences. https://www.nobelprize.org/prizes/physics/1986/press-release/.
Overlord, Q. File: Atomic force microscope block diagram.svg. Date: August 21, 2015. This work is in the public domain. https://commons.wikimedia.org/wiki/File:Atomic_force_microscope_block_diagram.svg.
Chych. File: AFM image Rough Glass 20x20.JPG. Date: July 14, 2009. This work is in the public domain. https://commons.wikimedia.org/wiki/File:AFMimageRoughGlass20x20.JPG.
Yurko. File: Single-Molecule-Under-Water-AFM-Tapping-Mode.jpg. Date: May 23, 2005. License: Creative Commons Attribution-Share Alike 3.0 unported. https://commons.wikimedia.org/wiki/File:Single-Molecule-Under-Water-AFM-Tapping-Mode.jpg.
Chatterjee, S., Biswas, N., Datta, A., Dey R., & Maiti, P. K. (2014, August). Atomic force microscopy in biofilm study. Microscop, 63(4), 269–278.
Ahimou, Francois, Semmens, Michael J., Novak, Paige J., & Haugstad, Greg. (2007). Biofilm cohesiveness measurement using a novel atomic force microscopy methodology. Applied and Environmental Microbiology. https://doi.org/10.1128/AEM.02388-06.
This diagram is in the public domain.
Vickers, T. File: DU640 spectrophotometer.jpg. Date: July 14, 2008. This work is in the public domain. https://commons.wikimedia.org/wiki/File:DU640_spectrophotometer.jpg.
Mehta, A. (2012, April 22). Ultraviolet-visible (UV-Vis) spectroscopy—Derivation of Beer-Lambert law. Pharma X Change info. https://pharmaxchange.info/2012/04/ultraviolet-visible-uv-vis-spectroscopy-%e2%80%93-derivation-of-beer-lambert-law/.
Lyndon, B. Johnson Space Center. (2004, February). Ultraviolet-absorption spectroscopic biofilm monitor. Tech Briefs. https://www.techbriefs.com/component/content/article/tb/techbriefs/physical-sciences/808.
Polytec GmbH. File: Interferometer Schema.jpg. Date: July 1, 2008. License: Creative Commons Attribution – Share Alike 3.0 https://commons.wikimedia.org/wiki/File:Interferometer_Schema.jpg.
Larimer, Curtis J., Brann, Michelle R., Suter, Jonathan D., Bonheyo, George T., & Addleman, Raymond S. (2016). Conference: Are those bugs reflective? Non-destructive biofilm imaging with white light interferometry. United States: N. p. Web. https://doi.org/10.1117/12.2239375.
Brann, M., Suter, J. D., Addleman, R. S., & Larimer, C. (2017). Monitoring bacterial biofilms with a microfluidic flow chip designed for imagining with white-light interferometry. Biomicrofluidics, 11(4). https://doi.org/10.1063/1.4985773.
Smith, B. C. (2011). Fundamentals of fourier transform infrared spectroscopy. CRC press.
Schuttlefield, J. D., & Grassian, V. H. (2008). ATR–FTIR spectroscopy in the undergraduate chemistry laboratory. Part I: fundamentals and examples. Journal of chemical education, 85(2), 279.
Lakin, P. (2011). General outline and strategies for IR and Raman spectral interpretation. In Infrared and Raman spectroscopy–Principles and spectral interpretation. Burlington, MA: Elsevier.
Huang, H., & Yin, Q. (2011). Fundamentals and application advances in attenuated total internal reflectance fourier transform infrared spectroscopy (ATR-FTIR)[J]. Journal of the Graduates Sun Yat-Sen University (Natural Sciences, Medicine), 1.
Chittur, K. K. (1998). FTIR/ATR for protein adsorption to biomaterial surfaces. Biomaterials, 19(4–5), 357–369.
Hind, A. R., Bhargava, S. K., & McKinnon, A. (2001). At the solid/liquid interface: FTIR/ATR—The tool of choice. Advances in Colloid and Interface Science, 93(1–3), 91–114.
Kogo, T., Kanematsu, H., Sano, K., Kitayabu, K., Wada, N., Miura, Y., Yoshitake, M., & Ikegai, H. (2015). Analyses of biofilm on metallic materials by FTIR-ATR. In Asia Steel International Conference 2015 (Asia Steel 2015), Proceedings of Asia Steel International Conference 2015 (Asia Steel 2015), pp. 156–157. Yokohama, Japan.
Sano, K., Kanematsu, H., Hirai, N., Ogawa, A., Kogo, T., & Tanaka, T. (2015). Some anti-fouling silane compound composite films on iron and their corrosion characteristics revealed by Raman spectroscopy and FTIR-ATR spectroscopy. CAMP-ISIJ, 28.
Sano, K., Kanematsu, H., Kogo, T., Hirai, N., & Tanaka, T. (2016). Corrosion and biofilm for a composite coated iron observed by FTIR-ATR and Raman spectroscopy. Transaction of the Institute of Materials Finishing, 94, 139–145.
Larkin, P. (2011). Infrared and Raman spectroscopy: Principles and spectral interpretation (1st ed., p. 978-0123869845). Waltham, MA: Elsevier.
Raman, C. V., & Krishnan, K. S. (1928). A new type of secondary radiation. Nature, 121(3048), 501.
Krishnan, R. S., & Shankar, R. K. (1981). Raman effect: History of the discovery. Journal of Raman Spectroscopy, 10(1), 1–8.
Krishnan, K. S. (1928). Influence of temperature on the Raman effect. Nature, 122(3078), 650.
Welch, D. F. (2000). A brief history of high-power semiconductor lasers. IEEE Journal of Selected Topics in Quantum Electronics, 6(6), 1470–1477.
Schopf, J. W., Kudryavtsev, A. B., Agresti, D. G., Wdowiak, T. J., & Czaja, A. D. (2002). Laser-Raman imagery of earth’s earliest fossils. Nature, 416(6876), 73.
Long, D. A. (1977). Raman spectroscopy (pp. 1–12). New York.
Mooradian, A., & Wright, G. B. (1966). First order Raman effect in III–V compounds. Solid State Communications, 4(9), 431–434.
Flaugh, P. L., O’Donnell, S. E., & Asher, S. A. (1984). Development of a new optical wavelength rejection filter: Demonstration of its utility in Raman spectroscopy. Applied Spectroscopy, 38(6), 847–850.
Mike25. File: 700 loab fix. Jpg. Date: May 2008. License: This work is in the public domain. https://commons.wikimedia.org/wiki/File:700_lab_fix.JPG.
Lewandowski, Z., & Beyenal, H. (2013, December 31). Imaging and characterizing biofilm components. In Fundamentals of biofilm research (p. 107). Bosa Roca: Taylor & Francis.
Renslow, R. S., Majors, P. D., McLean, J. S., Fredrickson, J. K., Ahmed, B., & Beyenal, H. (2010, August 15). In situ effective diffusion coefficient profiles in live biofilms using pulsed-field gradient nuclear magnetic resonance. Biotechnology and Bioengineering, 106(6), 928–937. https://doi.org/10.1002/bit.22755, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2898744/.
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Kanematsu, H., Barry, D.M. (2020). Detection and Evaluation of Biofilms. In: Formation and Control of Biofilm in Various Environments. Springer, Singapore. https://doi.org/10.1007/978-981-15-2240-6_6
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