Abstract
The discovery of DNA fingerprinting is one of the most fascinating scientific discoveries till date. It is not only limited to the laboratory research but also showed a huge potential in forensic science and criminal justice system. It was one of the milestones in resolving crimes by exploring the polymorphism of human DNA in noncoding regions. Since its inception, DNA fingerprinting has taken a great leap in terms of advancements in technology, accuracy, and reliability of the results as well as rapidity of the process for its more efficient application in justice delivery systems. This has become the most valuable armory of the judiciary system to aid in the conviction of guilty as well as exoneration of the innocent. Advancement of DNA fingerprinting technique from RFLP to STR and now NGS has sped up the process of DNA profiling with better discriminating power among individuals with greater efficacy. In this prospect, the current chapter elaborately recapitulates the process of advancement in DNA fingerprinting describing the use of different STR kits, i.e., autosomal STRs, Y-STRs, X-STRs, miniSTRs, etc., for forensic applications. We have also highlighted the importance of SNPs and amalgamation of NGS kits in forensic application. Notably, the importance of wildlife forensic has been discussed for the identification of species as well as its geographic origin. Another important budding aspect of RNA-based identification of forensically relevant biological fluids has also been discussed in much detail.
Keywords
- DNA fingerprinting
- Criminal justice system
- STRs
- Forensic analysis
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Benschop CC, Haned H, de Blaeij TJ, Meulenbroek AJ, Sijen T (2012) Assessment of mock cases involving complex low template DNA mixtures: a descriptive study. Forensic Sci Int Genet 6:697–707
Benschop C, Haned H, Sijen T (2013) Consensus and pool profiles to assist in the analysis and interpretation of complex low template DNA mixtures. Int J Legal Med 127:11–23
Bornman DM, Hester ME, Schuetter JM, Kasoji MD, Minard-Smith A, Barden CA et al (2012) Short-read, high throughput sequencing technology for STR genotyping. BioTechniques:1–6
Borsting C, Mauling N (2015) Next generation sequencing and its applications in forensic genetics. Forensic Sci Int Genet 18:78. https://doi.org/10.1016/j.fsigen.2015.02.002
Børsting C, Mogensen HS, Morling N (2013) Forensic genetic SNP typing of low-template DNA and highly degraded DNA from crime case samples. Forensic Sci Int Genet 7:345–352
Budowle B, van Daal A (2008) Forensically relevant SNP classes. BioTechniques 44:603–608
Budowle B, van Daal A (2009) Extracting evidence from forensic DNA analyses: future molecular biology directions. Biotechniques 46:339–340
Butler JM (2006) Genetics and genomics of core STR loci used in human identity testing. J Forensic Sci 51(2):253–265
Butler JM (2010) Chapter 3: historical methods. In: Fundamentals of forensic DNA typing. Elsevier Academic Press, San Diego, pp 43–78
Butler JM (2015) The future of forensic DNA analysis. Phil Trans R Sac B 370:20140252
Butler JM, Shen Y, McCord BR (2003) The development of reduced size STR amplicons as tools for analysis of degraded DNA. J Forensic Sci 48:1054
Chambers GK, Curtis C, Millar CD, Huynen L, Lambert DM (2014) DNA fingerprinting in zoology: past, present, future. Investig Genet 5:3
Coble MD, Butler JM (2005) Characterization of new miniSTR loci to aid analysis of degraded DNA. J Forensic Sci 50:43–53
Collins PJ, Hennessy LK, Leibelt CS, Roby RK, Reeder DJ, Foxall PA (2004) Developmental validation of a single-tube amplification of the 13 CODIS STR loci, D2S1338, D19S433, and amelogenin: the AmpFlSTR Identifiler PCR amplification kit. J Forensic Sci 49:1265–1277
Crawford MH, Beaty KG (2013) DNA fingerprinting in anthropological genetics: past, present, future. Investig Genet 4:23
Dauber EM, Kratzer A, Neuhuber F et al (2012) Germline mutations of STR-alleles include multistep mutations as denied by sequencing of repeat and flanking regions. Forensic Sci Int Genet 6:381–386
Eichmann C, Parson W (2008) “Mitominis”: multiplex PCR analysis of reduced size amplicons for compound sequence analysis of the entire mtDNA control region in highly degraded samples. Int J Legal Med 122:385–388
Freire-Aradas A, Fondevila M, Kriegel AK, Phillips C, Gill P et al (2012) A new SNP assay for identification of highly degraded human DNA. Forensic Sci Int Genet 6:341–349
Gaensslen RE, Harris HA, Lee HC (2007) Introduction to forensics & criminalistics. McGraw-Hill Companies, Inc. USA
Ge J, Eisenberg A, Budowle B (2012) Developing criteria and data to determine best options for expanding the core CODIS loci. Investig Genet 3:1
Giardina E, Spinella A, Novelli G (2011) Past, present and future of forensic DNA typing. Nanomedicine (Lond) 6:257–270
Guha S, Kashyap VK (2006) Molecular identification of lizard by RAPD & FINS of mitochondrial 16s rRNA gene. Legal Med (Tokyo, Japan) 8(1):5–10
Hanson EK, Ballantyne J (2013) Rapid and inexpensive body fluid identification by RNA profiling-based multiplex high resolution melt (HRM) analysis. F1000Res 2:281. https://doi.org/10.12688/f1000
Hopwood AJ, Elliott K (2012) Forensic DNA research: keeping it real. Int J Legal Med 126(2):343–344
Hudlow WR, Buoncristiani MR (2012) Development of a rapid, 96-well alkaline based differential DNA extraction method for sexual assault evidence. Forensic Sci Int Genet 6(1):1–16
Imaizumi K et al (2007) Development of species identification tests targeting the 16S ribosomal RNA coding region in mitochondrial DNA. Int J Legal Med 121(3):184–191
Ivanova NV, Clare EL, Borisenko AV (2012) DNA barcoding in mammals, methods. Mol biol (Clifton, NJ) 858:153–182
Jeffreys AJ, Wilson V, Thein SL (1985a) Hypervariable ‘minisatellite’ regions in human DNA. Nature 314:67–73
Jeffreys AJ, Wilson V, Thein SL (1985b) Individual-specific ‘fingerprints’ of human DNA. Nature 316:76–79
Jeffreys AJ, Wilson V, Thein SL (1985c) Individual-specific ‘fingerprints’ of human DNA. Nature 314:67–74
Jiang X, He J, Jia F, Shen H, Zhao J et al (2012) An integrated system of ABO typing and multiplex STR testing for forensic DNA analysis. Forensci Sci Int Genet 6:785–797
Jobling MA (2013) Curiosity in the genes: the DNA fingerprinting story. Investig Genet 4:20
Johnson RN, Wilson-Wilde L, Linacre A (2014) Current and future directions of DNA in wildlife forensic science. Forensic Sci Int Genet 10:1–14
Karlsson AO, Holmlund G (2007) Identification of mammal species using species-specific DNA pyrosequencing. Forensic Sci Int 173:16–20
Kidd K et al. (2012a) Better SNPs for better forensics: ancestry, phenotype, and family identification. Poster presented at the National Institute of Justice (NIJ) annual meeting, Arlington VA, June 2012
Kidd KK et al (2012b) Expanding data and resources for forensic use of SNPs in individual identification. Forensic Sci Int Genet 6(5):646–652
Kosoy R, Nassir R, Tian C et al (2009) Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America. Hum Mutat 30(1):69–78
Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ, Tomsey CS, Zachetti JM, Masibay A, Rabbach DR, Amiott EA, Sprecher CJ (2002) Validation of a 16-locus fluorescent multiplex system. J Forensic Sci 47:773–785
Legendre M, Pochet N, Pak T, Verstrepen KJ (2007) Sequence-based estimation of minisatellite and microsatellite repeat variability. Genome Res 17:1787–1796
Lindenbergh A, de Pagter M, Ramdayal G et al (2012) A multiplex (m) RNA-profiling system for the forensic identification of body fluids and contact traces. Forensci Sci Int Genet 6:565–577
Lou C, Cong B, Li S et al (2011) A SNaPshot assay for genotyping 44 individual identification single nucleotide polymorphisms. Electrophoresis 32:368–378
Manel S, Berthier P, Luikart G (2002) Detecting wildlife poaching: identifying the origin of individuals with Bayesian assignment tests and multilocus genotypes. Conserv Biol 16:650–659
Matte M, Williams L, Frappier R, Newman J (2012) Prevalence and persistence of foreign DNA beneath fingernails. Forensic Sci Int Genet 6:236–243
McDonald J, Lehman DC (2012) Forensic DNA analysis. Clin Lab Sci 25:109–113
McGraw SN, Keeler SP, Huffman JE (2013) Forensic DNA analysis of wildlife evidence. In: Jaiprakash S, Ray L (eds) Forensic DNA analysis (current practices and emerging technologies). ISBN 9781466571266
Moretti TR, Moreno LI, Smerick JB, Pignone ML, Hizon R et al (2016) Population data on the expanded CODIS core STR loci for eleven populations of significance for forensic DNA analyses in the United States. Forensic Sci Int Genet 25:175–181
Mulero JJ, Hennessy LK (2013) Next-generation STR genotyping kits for forensic applications. In: Jaiprakash S, Ray L (eds) Forensic DNA analysis (Current practices and emerging technologies). ISBN 9781466571266
Mullaney JM, Mills RE, Pittard WS, Devine SE (2010) Small insertions and deletions (INDELs) in human genomes. Hum Mol Genet 19:R131
Müller M, Sibbing U, Hohof C, Brinkmann B (2010) Haplotype-assisted characterization of germline mutations at short tandem repeat loci. Int J Legal Med 124:177–182
Musgrave-Brown E, Ballard D, Balogh K et al (2007) Forensic validation of the SNPforID 52-plex assay. Forensic Sci Int Genet 1:186–190
Nandinene MR, Prasad SPR, Goud CV, Negi DS, Nagaraju J, Gowrishankar J (2010) DNA-based identification of the victims of the Mangalore air crash of may 2010. Curr Sci 99:3
Osborne MJ, Christidis L, Norman JA (2002) Molecular phylogenetics of the Diprotodontia (kangaroos, wombats, koala, possums, and allies). Mol Phylogenet Evol 25(2):219–228
Pakstis AJ, Speed WC, Fang R et al (2010) SNPs for a universal individual identification panel. Hum Genet 127:315–324
Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B et al (2006) Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science 311:392–394
Polymeropoulos MH, Rath DS, Xiao H, Merrill CR (1992) Tetra nucleotide repeat polymorphism at the human beta-actin related pseudogene H-beta-ac-psi-2 (ACTBP2). Nucleic Acids Res 20:1432
Pun KM et al (2009) Species identification in mammals from mixed biological samples based on mitochondrial DNA control region length polymorphism. Electrophoresis 30(6):1008–1014
Ramel C (1997) Mini- and microsatellites. Environ Health Perspect 105(Suppl 4):781–789
Richert NJ (2011) Swabbing firearms for handler’s DNA. J Forensic Sci 56(4):972–975
Rolf B, Schurenkamp M, Junge A, Brinkmann B (1997) Sequence polymorphism at the tetranucleotide repeat of the human beta-actin related pseudogene H-beta-Acpsi-2 (ACTBP2) locus. Int J Legal Med 110:69–72
Romeika JM, Yan F (2013) Recent advances in forensic DNA analysis. J Forensic Res S12:001. https://doi.org/10.4172/2157-7145.S12-001
Sanchez JJ, Phillips C, Børsting C et al (2006) A multiplex assay with 52 single nucleotide polymorphisms for human identification. Electrophoresis 27:1713–1724
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. ProcNatl Acad Sci U S A 74:5463–5467
Shewale JG, Qi L, Calandro LM (2012) Principles, practice, and evolution of capillary electrophoresis as a tool for forensic DNA analysis. Forensic Sci Rev 24(2):79–100
Shrivastava P, Jain T, Trivedi VB (2016) DNA fingerprinting: a substantial and imperative aid to forensic investigation. Eur J Forensic Sci 3:23. https://doi.org/10.5455/ejfs.204929
Thomasma SM, Foran DR (2012) The influence of swabbing solutions on DNA recovery from touch samples. J Forensic Sci 58(2):465–469
Tsukada KK, Takayanagi H, Asamura M, Ota FH (2002) Multiplex short tandem repeat typing in degraded samples using newly designed primers for the TH01, TPOX, CSF1PO, and vWA loci. Legal Med 4:239–245
Van de Goor LHP, Panneman H, van Haeringen WA (2009) A proposal for standardization in forensic bovine DNA typing: allele nomenclature of 16 cattle-specific short tandem repeat loci. Anim Genet 40:630–636
van den Berge M, Bhoelai B, Harteveld J, Matai A, Sijen T (2016) Advancing forensic RNA typing: on nontarget secretions, a nasal mucosa marker, a differential co-extraction protocol and the sensitivity of DNA and RNA profiling. Forensic Sci Int Genet 20:119–129
Vandewoestyne M, Van Hoofstat D, Franssen A, Van Nieuwerburgh F, Deforce D (2013) Presence and potential of cell free DNA in different types of forensic samples. Forensic Sci Int Genet 7:316–320
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. (2001) The sequence of the human genome. Science 291: 1304–1351
Wang DY, Gopinath S, Lagace RE, Norona W, Hennessy LK et al (2015) Developmental validation of the GlobalFiler((R)) express PCR amplification kit: a 6-dye multiplex assay for the direct amplification of reference samples. Forensic Sci Int Genet 19:148–155
Warshauer DH, Lin D, Hari K, Jain R, Davis C, Larue B et al (2013) STRait Razor: a length-based forensic STR allele-calling tool for use with second generation sequencing data. Forensic Sci Int Genet 7:409–417
Zagorski N (2006) Profile of Alec. J Jeffreys Proc Natl Acad Sci U S A 103:8918–8920
Zech WD, Malik N, Thali M (2012) Applicability of DNA analysis on adhesive tape in forensic casework. J Forensic Sci 57:1036–1041
Zietkiewicz E, Witt M, Daca P, Zebracka-Gala J, Goniewicz M, Jarzab B (2012) Current genetic methodologies in the identification of disaster victims and in forensic analysis. J Appl Genet 53:41–60
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The authors are thankful to the Director of State Forensic Science Laboratory, Ranchi, Jharkhand, for the support.
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Imam, J., Reyaz, R., Rana, A.K., Yadav, V.K. (2018). DNA Fingerprinting: Discovery, Advancements, and Milestones. In: Dash, H., Shrivastava, P., Mohapatra, B., Das, S. (eds) DNA Fingerprinting: Advancements and Future Endeavors. Springer, Singapore. https://doi.org/10.1007/978-981-13-1583-1_1
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