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K-means Clustering: An Efficient Algorithm for Protein Complex Detection

  • S. Kalaivani
  • D. Ramyachitra
  • P. Manikandan
Conference paper
Part of the Advances in Intelligent Systems and Computing book series (AISC, volume 710)

Abstract

The protein complexes have significant biological functions of proteins and nucleic acids dense from the molecular interaction network in cells. Several computational methods are developed to detect protein complexes from the protein–protein interaction (PPI) networks. The existing algorithms do not predict better complex, and it also provides low performance values. In this research, K-means algorithm has been proposed for protein complex detection and compared with the existing algorithms such as MCODE and SPICi. The protein interaction and gene expression benchmark datasets such as Collins, DIP, Krogan, Krogan Extended, PPI-D1, PPI-D2, GSE12220, GSE12221, GSE12442, and GSE17716 have been used for comparing the performance of the existing and proposed algorithms. From this experimental analysis, it is inferred that the proposed K-means clustering algorithm outperforms the other existing methods.

Keywords

PPI Protein complex detection MCODE SPCi K-means clustering Yeast protein dataset Gene expression dataset 

Notes

Acknowledgements

The authors thank the Department of Science and Technology (DST), New Delhi (DST/INSPIRE Fellowship/2015/IF150093), for the financial support under INSPIRE Fellowship for this research work.

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Copyright information

© Springer Nature Singapore Pte Ltd. 2018

Authors and Affiliations

  1. 1.Department of Computer ScienceBharathiar UniversityCoimbatoreIndia

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